Wall clock time and date at job start Tue Mar 31 2020 16:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35368 * 116.99630 * 2 1 4 4 C 1.36093 * 125.57790 * 179.97438 * 3 2 1 5 5 C 1.39911 * 107.18077 * 179.97438 * 4 3 2 6 6 C 1.37830 * 106.67191 * 0.02562 * 5 4 3 7 7 C 1.46128 * 126.02571 * 179.97438 * 6 5 4 8 8 O 1.21765 * 120.00364 * 353.23920 * 7 6 5 9 9 N 1.34787 * 119.99751 * 173.23824 * 7 6 5 10 10 C 1.46924 * 120.63043 * 354.74794 * 9 7 6 11 11 C 1.53191 * 108.77461 * 126.40983 * 10 9 7 12 12 C 1.53039 * 109.31011 * 54.63748 * 11 10 9 13 13 H 1.08998 * 109.45988 * 178.61382 * 12 11 10 14 14 C 1.52998 * 109.46178 * 58.65555 * 12 11 10 15 15 C 1.53042 * 109.53990 * 298.63197 * 12 11 10 16 16 H 1.09001 * 109.49286 * 301.41603 * 15 12 11 17 17 C 1.52998 * 109.52480 * 181.33491 * 15 12 11 18 18 N 1.46501 * 109.46922 * 175.08300 * 17 15 12 19 19 C 1.36932 * 119.99956 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00170 * 359.97438 * 19 18 17 21 21 C 1.38810 * 120.00310 * 179.97438 * 19 18 17 22 22 N 1.31627 * 119.99883 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00486 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46956 * 89.99802 * 23 21 19 25 25 H 1.48499 * 109.47267 * 209.99677 * 23 21 19 26 26 H 1.48501 * 109.46982 * 330.00268 * 23 21 19 27 27 C 1.46925 * 120.62684 * 174.76802 * 9 7 6 28 28 O 1.34004 * 125.58324 * 0.27243 * 3 2 1 29 29 H 1.08998 * 109.47001 * 59.99886 * 1 2 3 30 30 H 1.09003 * 109.47018 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46928 * 299.99841 * 1 2 3 32 32 H 1.08003 * 126.40969 * 0.02726 * 4 3 2 33 33 H 1.07999 * 126.66019 * 180.02562 * 5 4 3 34 34 H 1.08994 * 109.58616 * 246.19930 * 10 9 7 35 35 H 1.09007 * 109.58509 * 6.48292 * 10 9 7 36 36 H 1.09005 * 109.49599 * 174.58556 * 11 10 9 37 37 H 1.08997 * 109.49852 * 294.68399 * 11 10 9 38 38 H 1.09009 * 109.47057 * 299.92862 * 14 12 11 39 39 H 1.08999 * 109.47522 * 59.92861 * 14 12 11 40 40 H 1.09006 * 109.47400 * 179.97438 * 14 12 11 41 41 H 1.08995 * 109.46772 * 295.07848 * 17 15 12 42 42 H 1.08995 * 109.47287 * 55.08531 * 17 15 12 43 43 H 0.97007 * 120.00301 * 359.97438 * 18 17 15 44 44 H 0.96998 * 120.00018 * 180.02562 * 22 21 19 45 45 H 1.09003 * 109.57981 * 113.80427 * 27 9 7 46 46 H 1.08994 * 109.70820 * 353.44890 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2062 0.0000 4 6 3.3892 1.4093 0.0005 5 6 3.5984 2.7926 -0.0003 6 6 2.3520 3.3810 -0.0007 7 6 2.0793 4.8167 -0.0010 8 8 2.9944 5.6103 0.1232 9 7 0.8148 5.2624 -0.1388 10 6 -0.2847 4.3246 -0.4042 11 6 -1.3804 4.5400 0.6445 12 6 -1.7969 6.0126 0.6462 13 1 -2.5938 6.1638 1.3744 14 6 -2.2983 6.4022 -0.7458 15 6 -0.5949 6.8841 1.0176 16 1 -0.2220 6.5903 1.9988 17 6 -1.0197 8.3535 1.0517 18 7 0.0993 9.1746 1.5206 19 6 -0.0474 10.5313 1.6341 20 1 -0.9878 10.9961 1.3775 21 6 1.0127 11.3092 2.0790 22 7 2.1588 10.7427 2.3922 23 14 0.8129 13.1601 2.2331 24 1 0.3213 13.4932 3.5942 25 1 2.1234 13.8202 2.0048 26 1 -0.1650 13.6382 1.2229 27 6 0.5098 6.6953 -0.0268 28 8 1.4264 2.3957 0.0052 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.1528 0.6454 0.0005 33 1 4.5514 3.3007 -0.0006 34 1 -0.6899 4.5088 -1.3991 35 1 0.0854 3.3011 -0.3441 36 1 -2.2426 3.9184 0.4028 37 1 -1.0000 4.2683 1.6292 38 1 -1.5014 6.2518 -1.4743 39 1 -3.1544 5.7817 -1.0106 40 1 -2.5954 7.4510 -0.7447 41 1 -1.3088 8.6714 0.0500 42 1 -1.8657 8.4716 1.7288 43 1 0.9439 8.7571 1.7515 44 1 2.8994 11.2863 2.7034 45 1 0.1693 7.0727 -0.9911 46 1 1.4027 7.2379 0.2834 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133186272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:47 Heat of formation + Delta-G solvation = -33.596853 kcal Electronic energy + Delta-G solvation = -28252.355151 eV Core-core repulsion = 24338.096600 eV Total energy + Delta-G solvation = -3914.258551 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 31.27 seconds Orbital eigenvalues (eV) -43.02611 -40.18912 -38.87469 -37.98638 -35.00325 -33.75219 -33.21506 -31.89330 -30.19212 -29.57031 -27.95476 -27.34725 -25.53708 -24.84336 -23.18943 -22.42200 -22.19938 -21.17885 -20.32986 -19.01384 -18.31767 -17.49867 -17.17940 -16.89094 -16.12754 -15.65172 -15.45515 -15.22429 -14.97883 -14.78940 -14.34601 -13.97656 -13.60649 -13.50620 -13.38838 -13.27929 -13.08145 -12.92781 -12.68150 -12.57867 -12.39008 -11.96264 -11.76299 -11.54249 -11.24407 -11.04413 -10.88136 -10.77376 -10.62598 -10.29831 -10.21390 -10.19788 -10.07319 -9.84707 -9.57582 -8.82250 -8.58394 -8.21605 -6.85955 -5.68882 -2.98722 0.92609 1.91124 2.18249 2.76147 3.10768 3.22289 3.47858 3.52378 3.54847 4.39659 4.59205 4.61093 4.63498 4.66121 4.78863 4.85389 4.91186 4.95531 5.16422 5.19246 5.25606 5.38807 5.51687 5.57483 5.61656 5.64234 5.65638 5.74627 5.81338 5.88934 5.94533 6.01070 6.11573 6.14974 6.23227 6.31832 6.34647 6.36775 6.56293 6.67529 6.78404 6.87585 6.90817 7.42969 7.75212 8.14908 8.48795 9.59728 10.17586 10.51705 11.53417 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.019094 B = 0.003148 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.086291 B = 8891.041125 C =10049.307935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.264 6.264 3 C 0.197 3.803 4 C -0.238 4.238 5 C -0.084 4.084 6 C -0.092 4.092 7 C 0.599 3.401 8 O -0.510 6.510 9 N -0.602 5.602 10 C 0.092 3.908 11 C -0.127 4.127 12 C -0.085 4.085 13 H 0.074 0.926 14 C -0.153 4.153 15 C -0.103 4.103 16 H 0.074 0.926 17 C 0.161 3.839 18 N -0.733 5.733 19 C -0.242 4.242 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.929 5.929 23 Si 0.906 3.094 24 H -0.291 1.291 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.121 3.879 28 O -0.181 6.181 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.162 0.838 33 H 0.168 0.832 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.064 0.936 41 H 0.023 0.977 42 H 0.021 0.979 43 H 0.385 0.615 44 H 0.255 0.745 45 H 0.071 0.929 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.580 -24.557 -7.360 26.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.178 6.178 3 C 0.102 3.898 4 C -0.258 4.258 5 C -0.105 4.105 6 C -0.142 4.142 7 C 0.387 3.613 8 O -0.387 6.387 9 N -0.334 5.334 10 C -0.030 4.030 11 C -0.165 4.165 12 C -0.104 4.104 13 H 0.093 0.907 14 C -0.210 4.210 15 C -0.122 4.122 16 H 0.093 0.907 17 C 0.033 3.967 18 N -0.378 5.378 19 C -0.373 4.373 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.577 5.577 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C 0.000 4.000 28 O -0.082 6.082 29 H 0.082 0.918 30 H 0.128 0.872 31 H 0.083 0.917 32 H 0.179 0.821 33 H 0.185 0.815 34 H 0.089 0.911 35 H 0.118 0.882 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.041 0.959 42 H 0.039 0.961 43 H 0.219 0.781 44 H 0.065 0.935 45 H 0.089 0.911 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.393 -24.072 -7.311 25.958 hybrid contribution -0.097 0.751 0.260 0.801 sum -6.490 -23.321 -7.051 25.213 Atomic orbital electron populations 1.23187 0.76743 1.04951 1.02703 1.86393 1.23025 1.19125 1.89254 1.21062 0.89862 0.78758 1.00148 1.20767 0.92065 0.96870 1.16096 1.22006 0.97932 0.92485 0.98042 1.22127 0.86966 0.87292 1.17833 1.16551 0.83284 0.83908 0.77544 1.90972 1.43779 1.53542 1.50402 1.48029 1.06173 1.09016 1.70185 1.22264 0.87847 0.93903 0.98988 1.21927 0.97874 0.97247 0.99433 1.21084 0.97651 0.93676 0.98011 0.90741 1.21992 1.00472 1.02081 0.96462 1.21704 0.94522 0.96916 0.99076 0.90749 1.20671 0.91733 0.87282 0.96994 1.42424 1.11647 1.04061 1.79672 1.19188 0.97492 0.83332 1.37288 0.91257 1.24758 0.96011 0.97929 1.02209 1.69676 1.02736 1.34384 1.50946 0.86210 0.76704 0.85702 0.77674 1.21803 1.21778 1.20816 1.21821 1.00518 0.78355 0.99310 1.84183 1.36572 1.14117 1.73350 0.91817 0.87222 0.91712 0.82084 0.81459 0.91057 0.88212 0.90957 0.91537 0.92468 0.93161 0.91675 0.95887 0.96132 0.78111 0.93473 0.91059 0.87679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 10.74 101.05 1.09 1.18 16 2 O -0.26 -2.30 10.55 -41.03 -0.43 -2.73 16 3 C 0.20 2.07 7.86 29.96 0.24 2.30 16 4 C -0.24 -2.47 10.89 -39.73 -0.43 -2.91 16 5 C -0.08 -1.02 10.67 -39.10 -0.42 -1.44 16 6 C -0.09 -1.26 6.86 -36.57 -0.25 -1.51 16 7 C 0.60 9.94 7.64 -13.09 -0.10 9.84 16 8 O -0.51 -10.46 16.32 5.13 0.08 -10.37 16 9 N -0.60 -8.96 2.97 -174.51 -0.52 -9.48 16 10 C 0.09 1.02 5.86 -3.71 -0.02 1.00 16 11 C -0.13 -1.31 5.63 -26.61 -0.15 -1.46 16 12 C -0.09 -1.05 2.71 -90.58 -0.25 -1.29 16 13 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 14 C -0.15 -1.71 8.11 37.16 0.30 -1.41 16 15 C -0.10 -1.68 2.15 -90.50 -0.19 -1.87 16 16 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 17 C 0.16 3.22 5.19 -4.04 -0.02 3.20 16 18 N -0.73 -18.93 5.38 -59.91 -0.32 -19.26 16 19 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -29.05 13.06 55.49 0.72 -28.32 16 23 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 25 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 27 C 0.12 2.06 5.03 -3.71 -0.02 2.04 16 28 O -0.18 -2.06 6.60 -19.24 -0.13 -2.18 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.16 1.29 8.06 -52.48 -0.42 0.87 16 33 H 0.17 1.88 8.06 -52.49 -0.42 1.45 16 34 H 0.07 0.72 6.69 -51.93 -0.35 0.37 16 35 H 0.10 1.04 3.77 -55.22 -0.21 0.83 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.65 4.98 -51.92 -0.26 0.39 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.80 6.58 -51.93 -0.34 0.46 16 41 H 0.02 0.46 6.73 -51.93 -0.35 0.11 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.38 10.65 6.90 -40.82 -0.28 10.37 16 44 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 45 H 0.07 1.16 6.69 -51.93 -0.35 0.82 16 46 H 0.10 2.22 6.24 -51.93 -0.32 1.90 16 LS Contribution 364.68 15.07 5.50 5.50 Total: -1.00 -34.03 364.68 -7.25 -41.29 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -6.65 Total: 7.55 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -0.48 Total: 0.15 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.12 Total: -57.06 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.48 Total: -15.29 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.03 -7.25 -41.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133186272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.689 kcal (2) G-P(sol) polarization free energy of solvation -34.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 31.27 seconds