Wall clock time and date at job start Tue Mar 31 2020 16:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35368 * 116.99630 * 2 1 4 4 C 1.36093 * 125.57790 * 179.97438 * 3 2 1 5 5 C 1.39911 * 107.18077 * 179.97438 * 4 3 2 6 6 C 1.37830 * 106.67191 * 0.02562 * 5 4 3 7 7 C 1.46128 * 126.02571 * 179.97438 * 6 5 4 8 8 O 1.21765 * 120.00364 * 353.23920 * 7 6 5 9 9 N 1.34787 * 119.99751 * 173.23824 * 7 6 5 10 10 C 1.46924 * 120.63043 * 354.74794 * 9 7 6 11 11 C 1.53191 * 108.77461 * 126.40983 * 10 9 7 12 12 C 1.53039 * 109.31011 * 54.63748 * 11 10 9 13 13 H 1.08998 * 109.45988 * 178.61382 * 12 11 10 14 14 C 1.52998 * 109.46178 * 58.65555 * 12 11 10 15 15 C 1.53042 * 109.53990 * 298.63197 * 12 11 10 16 16 H 1.09001 * 109.49286 * 301.41603 * 15 12 11 17 17 C 1.52998 * 109.52480 * 181.33491 * 15 12 11 18 18 N 1.46501 * 109.46922 * 175.08300 * 17 15 12 19 19 C 1.36932 * 119.99956 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00170 * 359.97438 * 19 18 17 21 21 C 1.38810 * 120.00310 * 179.97438 * 19 18 17 22 22 N 1.31627 * 119.99883 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00486 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46956 * 89.99802 * 23 21 19 25 25 H 1.48499 * 109.47267 * 209.99677 * 23 21 19 26 26 H 1.48501 * 109.46982 * 330.00268 * 23 21 19 27 27 C 1.46925 * 120.62684 * 174.76802 * 9 7 6 28 28 O 1.34004 * 125.58324 * 0.27243 * 3 2 1 29 29 H 1.08998 * 109.47001 * 59.99886 * 1 2 3 30 30 H 1.09003 * 109.47018 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46928 * 299.99841 * 1 2 3 32 32 H 1.08003 * 126.40969 * 0.02726 * 4 3 2 33 33 H 1.07999 * 126.66019 * 180.02562 * 5 4 3 34 34 H 1.08994 * 109.58616 * 246.19930 * 10 9 7 35 35 H 1.09007 * 109.58509 * 6.48292 * 10 9 7 36 36 H 1.09005 * 109.49599 * 174.58556 * 11 10 9 37 37 H 1.08997 * 109.49852 * 294.68399 * 11 10 9 38 38 H 1.09009 * 109.47057 * 299.92862 * 14 12 11 39 39 H 1.08999 * 109.47522 * 59.92861 * 14 12 11 40 40 H 1.09006 * 109.47400 * 179.97438 * 14 12 11 41 41 H 1.08995 * 109.46772 * 295.07848 * 17 15 12 42 42 H 1.08995 * 109.47287 * 55.08531 * 17 15 12 43 43 H 0.97007 * 120.00301 * 359.97438 * 18 17 15 44 44 H 0.96998 * 120.00018 * 180.02562 * 22 21 19 45 45 H 1.09003 * 109.57981 * 113.80427 * 27 9 7 46 46 H 1.08994 * 109.70820 * 353.44890 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2062 0.0000 4 6 3.3892 1.4093 0.0005 5 6 3.5984 2.7926 -0.0003 6 6 2.3520 3.3810 -0.0007 7 6 2.0793 4.8167 -0.0010 8 8 2.9944 5.6103 0.1232 9 7 0.8148 5.2624 -0.1388 10 6 -0.2847 4.3246 -0.4042 11 6 -1.3804 4.5400 0.6445 12 6 -1.7969 6.0126 0.6462 13 1 -2.5938 6.1638 1.3744 14 6 -2.2983 6.4022 -0.7458 15 6 -0.5949 6.8841 1.0176 16 1 -0.2220 6.5903 1.9988 17 6 -1.0197 8.3535 1.0517 18 7 0.0993 9.1746 1.5206 19 6 -0.0474 10.5313 1.6341 20 1 -0.9878 10.9961 1.3775 21 6 1.0127 11.3092 2.0790 22 7 2.1588 10.7427 2.3922 23 14 0.8129 13.1601 2.2331 24 1 0.3213 13.4932 3.5942 25 1 2.1234 13.8202 2.0048 26 1 -0.1650 13.6382 1.2229 27 6 0.5098 6.6953 -0.0268 28 8 1.4264 2.3957 0.0052 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.1528 0.6454 0.0005 33 1 4.5514 3.3007 -0.0006 34 1 -0.6899 4.5088 -1.3991 35 1 0.0854 3.3011 -0.3441 36 1 -2.2426 3.9184 0.4028 37 1 -1.0000 4.2683 1.6292 38 1 -1.5014 6.2518 -1.4743 39 1 -3.1544 5.7817 -1.0106 40 1 -2.5954 7.4510 -0.7447 41 1 -1.3088 8.6714 0.0500 42 1 -1.8657 8.4716 1.7288 43 1 0.9439 8.7571 1.7515 44 1 2.8994 11.2863 2.7034 45 1 0.1693 7.0727 -0.9911 46 1 1.4027 7.2379 0.2834 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133186272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:25 Heat of formation + Delta-G solvation = -56.383259 kcal Electronic energy + Delta-G solvation = -28253.343244 eV Core-core repulsion = 24338.096600 eV Total energy + Delta-G solvation = -3915.246644 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 8.75 seconds Orbital eigenvalues (eV) -43.92218 -41.37876 -39.62752 -39.20816 -36.69017 -35.07261 -34.24023 -33.53419 -31.72080 -30.64332 -28.83263 -28.27750 -27.03904 -25.94205 -24.95840 -23.40726 -23.10130 -22.58764 -21.41041 -20.02705 -19.42075 -18.95358 -18.43335 -18.05136 -17.32349 -16.79513 -16.42994 -16.35373 -16.29664 -15.82263 -15.66375 -15.36776 -15.19967 -14.70500 -14.56013 -14.33869 -14.20823 -14.11487 -14.02945 -13.78807 -13.04624 -12.99808 -12.87828 -12.77232 -12.63547 -12.47204 -12.41925 -12.16994 -12.01084 -11.90886 -11.77093 -11.52407 -11.28276 -11.15970 -11.06970 -10.92802 -9.78077 -9.12747 -9.00300 -7.94012 -5.24553 -0.08236 1.00201 1.30358 1.45369 1.48386 1.56889 1.82862 2.03541 2.22478 2.55678 3.38845 3.40943 3.68112 3.71215 3.81701 3.82634 4.02018 4.17610 4.21306 4.25456 4.28966 4.31839 4.38778 4.48252 4.54152 4.59346 4.70950 4.72975 4.74676 4.81449 4.85096 4.89881 4.96846 5.08763 5.13407 5.20256 5.23520 5.27050 5.33517 5.38791 5.48876 5.50139 5.58955 6.10880 6.26344 6.27485 6.91508 7.31916 8.08328 8.30369 9.29520 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.019094 B = 0.003148 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.086291 B = 8891.041125 C =10049.307935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.265 6.265 3 C 0.212 3.788 4 C -0.243 4.243 5 C -0.078 4.078 6 C -0.121 4.121 7 C 0.592 3.408 8 O -0.568 6.568 9 N -0.599 5.599 10 C 0.088 3.912 11 C -0.119 4.119 12 C -0.079 4.079 13 H 0.084 0.916 14 C -0.149 4.149 15 C -0.091 4.091 16 H 0.050 0.950 17 C 0.161 3.839 18 N -0.749 5.749 19 C -0.245 4.245 20 H 0.080 0.920 21 C -0.080 4.080 22 N -0.972 5.972 23 Si 0.977 3.023 24 H -0.286 1.286 25 H -0.297 1.297 26 H -0.266 1.266 27 C 0.130 3.870 28 O -0.175 6.175 29 H 0.073 0.927 30 H 0.138 0.862 31 H 0.068 0.932 32 H 0.186 0.814 33 H 0.169 0.831 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.082 0.918 40 H 0.051 0.949 41 H 0.032 0.968 42 H 0.026 0.974 43 H 0.370 0.630 44 H 0.250 0.750 45 H 0.078 0.922 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.367 -27.027 -8.318 29.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.179 6.179 3 C 0.116 3.884 4 C -0.262 4.262 5 C -0.099 4.099 6 C -0.171 4.171 7 C 0.383 3.617 8 O -0.450 6.450 9 N -0.330 5.330 10 C -0.032 4.032 11 C -0.157 4.157 12 C -0.098 4.098 13 H 0.103 0.897 14 C -0.206 4.206 15 C -0.110 4.110 16 H 0.069 0.931 17 C 0.034 3.966 18 N -0.392 5.392 19 C -0.377 4.377 20 H 0.098 0.902 21 C -0.272 4.272 22 N -0.623 5.623 23 Si 0.805 3.195 24 H -0.213 1.213 25 H -0.224 1.224 26 H -0.190 1.190 27 C 0.008 3.992 28 O -0.077 6.077 29 H 0.092 0.908 30 H 0.156 0.844 31 H 0.087 0.913 32 H 0.204 0.796 33 H 0.186 0.814 34 H 0.109 0.891 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.044 0.956 43 H 0.202 0.798 44 H 0.059 0.941 45 H 0.096 0.904 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.282 -26.587 -8.293 29.356 hybrid contribution 0.674 1.327 0.529 1.579 sum -8.608 -25.260 -7.764 27.793 Atomic orbital electron populations 1.23571 0.74596 1.07154 1.03370 1.86433 1.25201 1.17639 1.88606 1.21310 0.90176 0.78925 0.98017 1.21031 0.92891 0.96327 1.15974 1.22227 0.97626 0.93596 0.96429 1.21478 0.87832 0.86343 1.21422 1.16945 0.83088 0.85007 0.76701 1.90928 1.45449 1.55379 1.53244 1.48097 1.06917 1.08588 1.69405 1.22584 0.86817 0.93510 1.00326 1.21921 0.98877 0.96169 0.98719 1.21079 0.95560 0.94083 0.99109 0.89749 1.21965 1.01487 1.01910 0.95278 1.21563 0.96260 0.95507 0.97704 0.93118 1.20856 0.90021 0.88808 0.96898 1.42694 1.12615 1.04004 1.79845 1.19663 0.97619 0.84696 1.35676 0.90230 1.25664 0.95823 1.02814 1.02896 1.69871 1.03627 1.35948 1.52834 0.85091 0.76514 0.79872 0.77982 1.21279 1.22420 1.19040 1.21486 0.98499 0.79692 0.99555 1.84107 1.35966 1.14079 1.73511 0.90836 0.84395 0.91338 0.79644 0.81394 0.89132 0.87021 0.86773 0.92476 0.92843 0.89932 0.93037 0.94984 0.95624 0.79834 0.94126 0.90426 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 10.74 113.37 1.22 1.26 16 2 O -0.26 -3.76 10.55 -64.37 -0.68 -4.44 16 3 C 0.21 3.95 7.86 67.32 0.53 4.48 16 4 C -0.24 -4.61 10.89 22.18 0.24 -4.37 16 5 C -0.08 -1.90 10.67 22.58 0.24 -1.66 16 6 C -0.12 -3.34 6.86 24.22 0.17 -3.17 16 7 C 0.59 20.77 7.64 86.29 0.66 21.43 16 8 O -0.57 -25.46 16.32 -4.55 -0.07 -25.54 16 9 N -0.60 -18.28 2.97 -824.20 -2.45 -20.73 16 10 C 0.09 1.76 5.86 86.36 0.51 2.27 16 11 C -0.12 -2.09 5.63 30.67 0.17 -1.92 16 12 C -0.08 -1.78 2.71 -10.77 -0.03 -1.81 16 13 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 14 C -0.15 -2.90 8.11 71.98 0.58 -2.32 16 15 C -0.09 -3.03 2.15 -10.72 -0.02 -3.05 16 16 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 17 C 0.16 6.51 5.19 86.38 0.45 6.96 16 18 N -0.75 -40.24 5.38 -343.47 -1.85 -42.08 16 19 C -0.24 -14.23 9.99 84.03 0.84 -13.39 16 20 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 21 C -0.08 -4.82 5.50 84.86 0.47 -4.35 16 22 N -0.97 -63.37 13.06 21.65 0.28 -63.08 16 23 Si 0.98 47.96 29.55 68.60 2.03 49.99 16 24 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 25 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 26 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 27 C 0.13 4.67 5.03 86.36 0.43 5.10 16 28 O -0.17 -3.69 6.60 13.58 0.09 -3.60 16 29 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.14 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.19 2.50 8.06 -2.91 -0.02 2.48 16 33 H 0.17 3.93 8.06 -2.91 -0.02 3.91 16 34 H 0.09 1.52 6.69 -2.39 -0.02 1.50 16 35 H 0.11 2.03 3.77 -54.59 -0.21 1.83 16 36 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.05 1.08 4.98 -2.38 -0.01 1.07 16 39 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.05 1.15 6.58 -2.38 -0.02 1.13 16 41 H 0.03 1.26 6.73 -2.39 -0.02 1.25 16 42 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.37 21.87 6.90 -92.70 -0.64 21.23 16 44 H 0.25 15.79 8.31 -92.71 -0.77 15.02 16 45 H 0.08 2.63 6.69 -2.39 -0.02 2.61 16 46 H 0.05 2.52 6.24 -2.39 -0.01 2.50 16 Total: -1.00 -78.68 364.68 3.97 -74.70 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 0.17 Total: 29.31 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 6.45 Total: 5.47 kcal Atomic # 7 Polarization: -121.88 SS G_CDS: -4.01 Total: -125.90 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -0.66 Total: -33.58 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.03 Total: 49.99 kcal Total: -78.68 3.97 -74.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133186272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.320 kcal (2) G-P(sol) polarization free energy of solvation -78.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.75 seconds