Wall clock time and date at job start Tue Mar 31 2020 16:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35378 * 116.99669 * 2 1 4 4 C 1.36089 * 125.57834 * 180.02562 * 3 2 1 5 5 C 1.39909 * 107.17343 * 179.74141 * 4 3 2 6 6 C 1.37821 * 106.67907 * 0.41316 * 5 4 3 7 7 C 1.46137 * 126.03276 * 179.85154 * 6 5 4 8 8 O 1.21772 * 119.99545 * 352.39843 * 7 6 5 9 9 N 1.34773 * 119.99971 * 172.40734 * 7 6 5 10 10 C 1.46925 * 120.63372 * 352.58943 * 9 7 6 11 11 C 1.53191 * 108.89454 * 233.68067 * 10 9 7 12 12 C 1.53042 * 109.30991 * 305.29266 * 11 10 9 13 13 H 1.09006 * 109.45766 * 301.34324 * 12 11 10 14 14 C 1.53003 * 109.45712 * 181.38963 * 12 11 10 15 15 C 1.53039 * 109.53887 * 61.36534 * 12 11 10 16 16 H 1.09001 * 109.49581 * 58.59072 * 15 12 11 17 17 C 1.53006 * 109.49484 * 178.68196 * 15 12 11 18 18 N 1.46499 * 109.46622 * 185.00201 * 17 15 12 19 19 C 1.36942 * 119.99760 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99782 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00137 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99805 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00277 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47069 * 60.00297 * 23 21 19 25 25 H 1.48502 * 109.47306 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47118 * 300.00311 * 23 21 19 27 27 C 1.47203 * 120.81149 * 172.73388 * 9 7 6 28 28 O 1.34010 * 125.57378 * 0.02562 * 3 2 1 29 29 H 1.09003 * 109.46663 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47477 * 299.99930 * 1 2 3 31 31 H 1.08997 * 109.47211 * 60.00619 * 1 2 3 32 32 H 1.08001 * 126.40975 * 0.02562 * 4 3 2 33 33 H 1.08005 * 126.65733 * 180.26377 * 5 4 3 34 34 H 1.09001 * 109.58504 * 113.81474 * 10 9 7 35 35 H 1.09005 * 109.58455 * 353.54030 * 10 9 7 36 36 H 1.08999 * 109.50267 * 65.24240 * 11 10 9 37 37 H 1.09000 * 109.49397 * 185.34169 * 11 10 9 38 38 H 1.08993 * 109.47284 * 59.99816 * 14 12 11 39 39 H 1.09004 * 109.47167 * 180.02562 * 14 12 11 40 40 H 1.09005 * 109.46863 * 299.99631 * 14 12 11 41 41 H 1.09000 * 109.46745 * 304.99835 * 17 15 12 42 42 H 1.08999 * 109.46935 * 65.00047 * 17 15 12 43 43 H 0.97001 * 120.00300 * 359.97438 * 18 17 15 44 44 H 0.97002 * 119.99854 * 179.97438 * 22 21 19 45 45 H 1.09000 * 109.53982 * 6.53167 * 27 9 7 46 46 H 1.09002 * 109.67466 * 246.22686 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2063 0.0000 4 6 3.3892 1.4093 -0.0005 5 6 3.5982 2.7927 -0.0063 6 6 2.3519 3.3811 0.0003 7 6 2.0791 4.8168 0.0007 8 8 2.9931 5.6101 0.1343 9 7 0.8158 5.2626 -0.1466 10 6 -0.2739 4.3315 -0.4697 11 6 -1.0072 4.8391 -1.7153 12 6 -1.4648 6.2805 -1.4809 13 1 -2.1178 6.3169 -0.6088 14 6 -2.2279 6.7792 -2.7097 15 6 -0.2445 7.1725 -1.2418 16 1 0.4209 7.1173 -2.1033 17 6 -0.7009 8.6190 -1.0402 18 7 0.4718 9.4901 -0.9305 19 6 0.3091 10.8372 -0.7455 20 1 -0.6837 11.2572 -0.6800 21 6 1.4202 11.6626 -0.6410 22 7 2.6302 11.1506 -0.7203 23 14 1.1983 13.5000 -0.3878 24 1 0.4536 13.7394 0.8746 25 1 2.5296 14.1533 -0.3092 26 1 0.4352 14.0682 -1.5280 27 6 0.4975 6.6914 0.0091 28 8 1.4262 2.3957 0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 4.1527 0.6455 -0.0013 33 1 4.5512 3.3008 -0.0122 34 1 -0.9695 4.2785 0.3678 35 1 0.1377 3.3414 -0.6660 36 1 -0.3346 4.8058 -2.5724 37 1 -1.8751 4.2086 -1.9086 38 1 -3.0977 6.1447 -2.8794 39 1 -2.5536 7.8060 -2.5432 40 1 -1.5754 6.7423 -3.5822 41 1 -1.3067 8.9306 -1.8910 42 1 -1.2925 8.6894 -0.1275 43 1 1.3635 9.1128 -0.9890 44 1 3.4066 11.7275 -0.6477 45 1 1.4201 7.2596 0.1279 46 1 -0.1344 6.8332 0.8859 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133186273.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:08 Heat of formation + Delta-G solvation = -61.954164 kcal Electronic energy + Delta-G solvation = -28027.447765 eV Core-core repulsion = 24111.959548 eV Total energy + Delta-G solvation = -3915.488217 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.91203 -41.23776 -39.58741 -39.13584 -36.67416 -35.21590 -34.26257 -33.55819 -31.69958 -30.74317 -29.31470 -28.18599 -27.12225 -25.13261 -24.76724 -23.12335 -23.04596 -22.60779 -21.44695 -20.66925 -19.55014 -19.15113 -18.43524 -18.14648 -17.33598 -16.74543 -16.53043 -16.29380 -15.88902 -15.64576 -15.49387 -15.45517 -15.12980 -14.64441 -14.48103 -14.38003 -14.26584 -14.15431 -13.99847 -13.70616 -13.05443 -13.03718 -12.95630 -12.76716 -12.68983 -12.60788 -12.47093 -12.22590 -12.01748 -11.90855 -11.80329 -11.51332 -11.25601 -11.16365 -11.03813 -10.89839 -9.84065 -9.14030 -8.98935 -7.93147 -5.23714 -0.08416 1.02056 1.29071 1.45464 1.49821 1.56078 1.80931 2.02644 2.23150 2.56249 3.39353 3.42790 3.67398 3.69878 3.79632 3.83819 3.98703 4.18704 4.21805 4.24990 4.29451 4.31778 4.42397 4.48897 4.56087 4.58754 4.71432 4.71687 4.77711 4.83215 4.85089 4.90416 4.94435 5.03773 5.10172 5.19591 5.21975 5.24317 5.34129 5.42854 5.48682 5.52093 5.55939 6.09026 6.26150 6.27363 6.91084 7.32576 8.09429 8.31402 9.30170 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.018612 B = 0.003086 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.083353 B = 9071.671688 C =10343.580033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.265 6.265 3 C 0.214 3.786 4 C -0.242 4.242 5 C -0.079 4.079 6 C -0.120 4.120 7 C 0.593 3.407 8 O -0.568 6.568 9 N -0.602 5.602 10 C 0.094 3.906 11 C -0.120 4.120 12 C -0.078 4.078 13 H 0.088 0.912 14 C -0.145 4.145 15 C -0.089 4.089 16 H 0.049 0.951 17 C 0.158 3.842 18 N -0.749 5.749 19 C -0.246 4.246 20 H 0.080 0.920 21 C -0.080 4.080 22 N -0.972 5.972 23 Si 0.977 3.023 24 H -0.276 1.276 25 H -0.298 1.298 26 H -0.275 1.275 27 C 0.128 3.872 28 O -0.176 6.176 29 H 0.138 0.862 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.186 0.814 33 H 0.168 0.832 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.055 0.945 37 H 0.114 0.886 38 H 0.080 0.920 39 H 0.051 0.949 40 H 0.044 0.956 41 H 0.035 0.965 42 H 0.026 0.974 43 H 0.370 0.630 44 H 0.250 0.750 45 H 0.056 0.944 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.649 -28.011 -0.227 29.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.179 6.179 3 C 0.117 3.883 4 C -0.262 4.262 5 C -0.100 4.100 6 C -0.170 4.170 7 C 0.384 3.616 8 O -0.450 6.450 9 N -0.333 5.333 10 C -0.026 4.026 11 C -0.158 4.158 12 C -0.097 4.097 13 H 0.106 0.894 14 C -0.202 4.202 15 C -0.109 4.109 16 H 0.068 0.932 17 C 0.032 3.968 18 N -0.391 5.391 19 C -0.377 4.377 20 H 0.098 0.902 21 C -0.272 4.272 22 N -0.623 5.623 23 Si 0.806 3.194 24 H -0.202 1.202 25 H -0.224 1.224 26 H -0.201 1.201 27 C 0.005 3.995 28 O -0.078 6.078 29 H 0.156 0.844 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.204 0.796 33 H 0.185 0.815 34 H 0.108 0.892 35 H 0.125 0.875 36 H 0.074 0.926 37 H 0.132 0.868 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.044 0.956 43 H 0.202 0.798 44 H 0.059 0.941 45 H 0.074 0.926 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.566 -27.579 -0.134 29.534 hybrid contribution 0.747 1.357 0.137 1.555 sum -9.819 -26.222 0.003 28.000 Atomic orbital electron populations 1.23562 0.74579 1.07143 1.03366 1.86439 1.25216 1.17580 1.88625 1.21234 0.90106 0.78826 0.98125 1.21030 0.92917 0.96310 1.15931 1.22227 0.97642 0.93620 0.96504 1.21446 0.87783 0.86348 1.21400 1.16921 0.82964 0.84985 0.76775 1.90939 1.45365 1.55382 1.53277 1.48175 1.07423 1.09136 1.68518 1.22407 0.88614 0.92717 0.98882 1.21975 1.01124 0.95987 0.96669 1.21098 0.94675 0.93876 1.00059 0.89415 1.21852 1.00221 1.01518 0.96584 1.21572 0.97776 0.94942 0.96570 0.93203 1.20913 0.89396 0.88319 0.98218 1.42687 1.04328 1.04274 1.87853 1.19632 0.92895 0.85010 1.40208 0.90241 1.25664 0.94982 1.02818 1.03732 1.69870 0.97606 1.35797 1.59019 0.85162 0.76135 0.79798 0.78354 1.20161 1.22403 1.20104 1.21560 1.00130 0.79495 0.98267 1.84132 1.36312 1.14061 1.73251 0.84395 0.91284 0.90911 0.79625 0.81460 0.89161 0.87525 0.92644 0.86753 0.90065 0.92962 0.93674 0.94706 0.95627 0.79828 0.94131 0.92576 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 10.74 113.37 1.22 1.26 16 2 O -0.26 -3.71 10.55 -64.48 -0.68 -4.39 16 3 C 0.21 3.94 7.86 67.32 0.53 4.47 16 4 C -0.24 -4.58 10.89 22.17 0.24 -4.34 16 5 C -0.08 -1.92 10.67 22.58 0.24 -1.68 16 6 C -0.12 -3.29 6.79 24.22 0.16 -3.13 16 7 C 0.59 20.80 7.63 86.29 0.66 21.46 16 8 O -0.57 -25.57 16.33 -4.58 -0.07 -25.65 16 9 N -0.60 -18.34 2.98 -823.48 -2.46 -20.80 16 10 C 0.09 1.88 6.09 86.36 0.53 2.41 16 11 C -0.12 -2.14 5.36 30.67 0.16 -1.98 16 12 C -0.08 -1.76 2.23 -10.77 -0.02 -1.79 16 13 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 14 C -0.14 -3.04 8.82 71.98 0.63 -2.40 16 15 C -0.09 -2.98 1.92 -10.72 -0.02 -3.00 16 16 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 17 C 0.16 6.40 5.41 86.38 0.47 6.87 16 18 N -0.75 -40.28 5.38 -343.45 -1.85 -42.12 16 19 C -0.25 -14.29 9.99 84.03 0.84 -13.45 16 20 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 21 C -0.08 -4.82 5.50 84.86 0.47 -4.36 16 22 N -0.97 -63.49 13.06 21.65 0.28 -63.21 16 23 Si 0.98 47.97 29.55 68.60 2.03 50.00 16 24 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 25 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 26 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 27 C 0.13 4.58 5.54 86.31 0.48 5.06 16 28 O -0.18 -3.68 6.72 13.45 0.09 -3.59 16 29 H 0.14 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.19 2.49 8.06 -2.91 -0.02 2.46 16 33 H 0.17 3.95 8.06 -2.91 -0.02 3.93 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.11 1.94 4.23 -21.68 -0.09 1.84 16 36 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.05 1.24 6.29 -2.39 -0.02 1.23 16 40 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.04 1.38 6.14 -2.39 -0.01 1.37 16 42 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.37 21.94 6.90 -92.71 -0.64 21.30 16 44 H 0.25 15.85 8.31 -92.71 -0.77 15.08 16 45 H 0.06 2.60 6.23 -2.39 -0.01 2.58 16 46 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -78.81 371.08 4.20 -74.62 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 0.27 Total: 29.74 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 6.58 Total: 5.41 kcal Atomic # 7 Polarization: -122.11 SS G_CDS: -4.02 Total: -126.13 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -0.66 Total: -33.62 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Total: -78.81 4.20 -74.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133186273.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.663 kcal (2) G-P(sol) polarization free energy of solvation -78.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds