Wall clock time and date at job start Tue Mar 31 2020 16:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35376 * 117.00252 * 2 1 4 4 C 1.36091 * 125.58049 * 180.02562 * 3 2 1 5 5 C 1.39900 * 107.17633 * 180.02562 * 4 3 2 6 6 C 1.37826 * 106.67854 * 359.97438 * 5 4 3 7 7 C 1.46132 * 126.03279 * 179.97438 * 6 5 4 8 8 O 1.21766 * 120.00228 * 353.18014 * 7 6 5 9 9 N 1.34781 * 119.99825 * 173.17174 * 7 6 5 10 10 C 1.46921 * 120.63099 * 354.59393 * 9 7 6 11 11 C 1.53197 * 108.77525 * 126.36756 * 10 9 7 12 12 C 1.53106 * 109.32927 * 54.63365 * 11 10 9 13 13 H 1.09000 * 109.45112 * 58.65061 * 12 11 10 14 14 C 1.52998 * 109.50062 * 178.63315 * 12 11 10 15 15 C 1.53034 * 109.50302 * 298.65389 * 12 11 10 16 16 H 1.09000 * 109.50396 * 301.38539 * 15 12 11 17 17 C 1.53004 * 109.49980 * 181.31751 * 15 12 11 18 18 N 1.46497 * 109.47103 * 175.06322 * 17 15 12 19 19 C 1.36940 * 119.99832 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00087 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00153 * 180.02562 * 19 18 17 22 22 N 1.31616 * 120.00192 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00319 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46721 * 59.99767 * 23 21 19 25 25 H 1.48499 * 109.47273 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46709 * 300.00172 * 23 21 19 27 27 C 1.46928 * 120.62512 * 174.56633 * 9 7 6 28 28 O 1.34003 * 125.57178 * 0.28860 * 3 2 1 29 29 H 1.08995 * 109.47555 * 59.99428 * 1 2 3 30 30 H 1.08998 * 109.47397 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46940 * 299.99448 * 1 2 3 32 32 H 1.08004 * 126.40901 * 359.97438 * 4 3 2 33 33 H 1.08002 * 126.66153 * 180.02562 * 5 4 3 34 34 H 1.09003 * 109.58123 * 246.15089 * 10 9 7 35 35 H 1.08992 * 109.58642 * 6.43428 * 10 9 7 36 36 H 1.09003 * 109.49152 * 174.58037 * 11 10 9 37 37 H 1.08993 * 109.49348 * 294.64492 * 11 10 9 38 38 H 1.09002 * 109.47370 * 180.02562 * 14 12 11 39 39 H 1.09007 * 109.47164 * 300.04889 * 14 12 11 40 40 H 1.08997 * 109.47902 * 60.04777 * 14 12 11 41 41 H 1.08995 * 109.47028 * 295.06633 * 17 15 12 42 42 H 1.09001 * 109.46526 * 55.06945 * 17 15 12 43 43 H 0.96995 * 120.00570 * 0.02562 * 18 17 15 44 44 H 0.97004 * 120.00511 * 180.02562 * 22 21 19 45 45 H 1.08999 * 109.58726 * 113.84643 * 27 9 7 46 46 H 1.09003 * 109.58988 * 353.41822 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0436 1.2062 0.0000 4 6 3.3893 1.4092 -0.0005 5 6 3.5984 2.7924 0.0003 6 6 2.3521 3.3810 0.0007 7 6 2.0794 4.8166 0.0020 8 8 2.9944 5.6101 0.1282 9 7 0.8151 5.2625 -0.1365 10 6 -0.2836 4.3255 -0.4078 11 6 -1.3810 4.5357 0.6403 12 6 -1.7986 6.0088 0.6483 13 1 -2.1543 6.2906 -0.3427 14 6 -2.9184 6.2166 1.6699 15 6 -0.5970 6.8784 1.0251 16 1 -0.2253 6.5804 2.0055 17 6 -1.0224 8.3475 1.0652 18 7 0.0956 9.1668 1.5397 19 6 -0.0518 10.5230 1.6591 20 1 -0.9923 10.9885 1.4039 21 6 1.0076 11.2994 2.1081 22 7 2.1536 10.7321 2.4196 23 14 0.8064 13.1494 2.2717 24 1 -0.2874 13.4453 3.2315 25 1 2.0742 13.7434 2.7666 26 1 0.4725 13.7300 0.9463 27 6 0.5093 6.6948 -0.0185 28 8 1.4264 2.3956 0.0055 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 4.1528 0.6453 -0.0006 33 1 4.5515 3.3005 -0.0002 34 1 -0.6874 4.5141 -1.4025 35 1 0.0868 3.3020 -0.3518 36 1 -2.2425 3.9149 0.3943 37 1 -1.0022 4.2592 1.6241 38 1 -3.2157 7.2653 1.6749 39 1 -3.7744 5.5972 1.4017 40 1 -2.5630 5.9353 2.6611 41 1 -1.3101 8.6699 0.0646 42 1 -1.8695 8.4621 1.7416 43 1 0.9401 8.7487 1.7692 44 1 2.8939 11.2746 2.7337 45 1 0.1702 7.0765 -0.9815 46 1 1.4024 7.2343 0.2968 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133186274.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:40 Heat of formation + Delta-G solvation = -36.640614 kcal Electronic energy + Delta-G solvation = -28113.838601 eV Core-core repulsion = 24199.448062 eV Total energy + Delta-G solvation = -3914.390539 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -43.02651 -40.05083 -38.85120 -37.89451 -35.05142 -33.82943 -33.30482 -31.90476 -30.19264 -29.62508 -28.35989 -27.36656 -25.56476 -23.87820 -23.22364 -22.21009 -22.07316 -21.22683 -20.36641 -19.50052 -18.76032 -17.51779 -17.26526 -16.90606 -16.12325 -15.64282 -15.50045 -14.84282 -14.81461 -14.57416 -14.43947 -13.90236 -13.75511 -13.43022 -13.40707 -13.27257 -13.13457 -12.81960 -12.60628 -12.52542 -12.41221 -11.94912 -11.86591 -11.69642 -11.41030 -10.98386 -10.83659 -10.79197 -10.59739 -10.31581 -10.21196 -10.18049 -10.08580 -9.83349 -9.56592 -8.82184 -8.62158 -8.23000 -6.85433 -5.68489 -2.98339 0.92325 1.90883 2.18068 2.75936 3.10192 3.21999 3.48432 3.52365 3.54149 4.39314 4.59111 4.60902 4.63465 4.66074 4.78959 4.83822 4.89607 4.95514 5.14648 5.18452 5.27281 5.38714 5.57489 5.61923 5.62538 5.64179 5.66688 5.75491 5.82053 5.91160 5.94547 6.01319 6.11427 6.16472 6.23013 6.23589 6.32788 6.44837 6.55378 6.65817 6.81912 6.87298 6.90760 7.42187 7.74966 8.14375 8.49208 9.60048 10.18005 10.52117 11.53744 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.018283 B = 0.003154 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.097769 B = 8874.892150 C =10141.747570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.264 6.264 3 C 0.197 3.803 4 C -0.238 4.238 5 C -0.084 4.084 6 C -0.093 4.093 7 C 0.600 3.400 8 O -0.510 6.510 9 N -0.603 5.603 10 C 0.093 3.907 11 C -0.126 4.126 12 C -0.085 4.085 13 H 0.071 0.929 14 C -0.147 4.147 15 C -0.102 4.102 16 H 0.075 0.925 17 C 0.159 3.841 18 N -0.733 5.733 19 C -0.243 4.243 20 H 0.069 0.931 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.906 3.094 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.121 3.879 28 O -0.181 6.181 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.162 0.838 33 H 0.168 0.832 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.048 0.952 40 H 0.053 0.947 41 H 0.019 0.981 42 H 0.028 0.972 43 H 0.385 0.615 44 H 0.256 0.744 45 H 0.069 0.931 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.710 -24.573 -6.729 26.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.178 6.178 3 C 0.102 3.898 4 C -0.258 4.258 5 C -0.104 4.104 6 C -0.142 4.142 7 C 0.387 3.613 8 O -0.387 6.387 9 N -0.335 5.335 10 C -0.029 4.029 11 C -0.165 4.165 12 C -0.104 4.104 13 H 0.090 0.910 14 C -0.205 4.205 15 C -0.122 4.122 16 H 0.093 0.907 17 C 0.031 3.969 18 N -0.378 5.378 19 C -0.374 4.374 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.578 5.578 23 Si 0.737 3.263 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.213 1.213 27 C 0.000 4.000 28 O -0.082 6.082 29 H 0.082 0.918 30 H 0.128 0.872 31 H 0.083 0.917 32 H 0.179 0.821 33 H 0.185 0.815 34 H 0.087 0.913 35 H 0.119 0.881 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.036 0.964 42 H 0.045 0.955 43 H 0.219 0.781 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.517 -24.089 -6.662 25.829 hybrid contribution -0.088 0.755 0.204 0.787 sum -6.605 -23.334 -6.459 25.096 Atomic orbital electron populations 1.23185 0.76740 1.04955 1.02706 1.86393 1.23027 1.19125 1.89253 1.21062 0.89859 0.78748 1.00135 1.20764 0.92065 0.96871 1.16094 1.22004 0.97933 0.92487 0.98020 1.22125 0.86965 0.87287 1.17858 1.16548 0.83274 0.83913 0.77518 1.90973 1.43777 1.53557 1.50372 1.48045 1.06245 1.09101 1.70119 1.22243 0.87895 0.94034 0.98755 1.21978 0.97726 0.97249 0.99498 1.21113 0.95534 0.93887 0.99856 0.91021 1.21877 0.97343 1.02370 0.98864 1.21733 0.94334 0.96939 0.99175 0.90699 1.20718 0.91951 0.87256 0.96952 1.42409 1.11725 1.04139 1.79498 1.19145 0.97506 0.83409 1.37323 0.91312 1.24751 0.96011 0.97915 1.02179 1.69660 1.02764 1.34515 1.50827 0.86289 0.76601 0.85680 0.77711 1.21354 1.21705 1.21309 1.21820 1.00647 0.78346 0.99169 1.84181 1.36581 1.14124 1.73353 0.91809 0.87220 0.91717 0.82074 0.81452 0.91310 0.88113 0.90961 0.91497 0.91542 0.93253 0.92772 0.96356 0.95478 0.78122 0.93419 0.91285 0.87560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 10.74 101.05 1.09 1.18 16 2 O -0.26 -2.30 10.55 -41.05 -0.43 -2.73 16 3 C 0.20 2.07 7.86 29.96 0.24 2.31 16 4 C -0.24 -2.47 10.89 -39.73 -0.43 -2.90 16 5 C -0.08 -1.02 10.67 -39.11 -0.42 -1.44 16 6 C -0.09 -1.27 6.86 -36.57 -0.25 -1.52 16 7 C 0.60 9.97 7.64 -13.09 -0.10 9.87 16 8 O -0.51 -10.46 16.31 5.13 0.08 -10.38 16 9 N -0.60 -9.02 2.97 -174.50 -0.52 -9.54 16 10 C 0.09 1.03 6.33 -3.71 -0.02 1.01 16 11 C -0.13 -1.31 5.37 -26.57 -0.14 -1.45 16 12 C -0.08 -1.05 2.23 -90.55 -0.20 -1.25 16 13 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 14 C -0.15 -1.72 8.82 37.16 0.33 -1.39 16 15 C -0.10 -1.67 1.92 -90.50 -0.17 -1.85 16 16 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 17 C 0.16 3.18 5.41 -4.04 -0.02 3.15 16 18 N -0.73 -18.91 5.38 -59.91 -0.32 -19.24 16 19 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -29.05 13.06 55.49 0.72 -28.33 16 23 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 C 0.12 2.08 5.50 -3.71 -0.02 2.05 16 28 O -0.18 -2.06 6.60 -19.27 -0.13 -2.19 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.16 1.29 8.06 -52.48 -0.42 0.87 16 33 H 0.17 1.88 8.06 -52.49 -0.42 1.45 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.10 1.04 3.77 -55.20 -0.21 0.84 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.85 6.29 -51.93 -0.33 0.52 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.03 0.54 6.14 -51.93 -0.32 0.22 16 43 H 0.38 10.64 6.89 -40.82 -0.28 10.36 16 44 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 45 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.11 2.24 6.24 -51.93 -0.32 1.92 16 LS Contribution 370.76 15.07 5.59 5.59 Total: -1.00 -34.01 370.76 -7.34 -41.35 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -6.92 Total: 7.34 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -0.38 Total: 0.25 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: -0.12 Total: -57.10 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.48 Total: -15.30 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.01 -7.34 -41.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133186274.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.706 kcal (2) G-P(sol) polarization free energy of solvation -34.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds