Wall clock time and date at job start Tue Mar 31 2020 16:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 110.38824 * 2 1 4 4 C 1.54799 * 110.52425 * 237.82581 * 2 1 3 5 5 N 1.48140 * 104.41587 * 265.22482 * 4 2 1 6 6 C 1.34780 * 127.83741 * 140.36493 * 5 4 2 7 7 O 1.21280 * 120.00423 * 179.67761 * 6 5 4 8 8 C 1.50701 * 119.99795 * 359.68437 * 6 5 4 9 9 C 1.52997 * 109.47212 * 179.97438 * 8 6 5 10 10 C 1.52992 * 109.47482 * 179.97438 * 9 8 6 11 11 F 1.39900 * 109.47126 * 59.99914 * 10 9 8 12 12 F 1.39906 * 109.47544 * 179.97438 * 10 9 8 13 13 F 1.39905 * 109.47115 * 300.00260 * 10 9 8 14 14 C 1.48145 * 104.32678 * 320.10758 * 5 4 2 15 15 C 1.54284 * 110.34438 * 122.23394 * 2 1 3 16 16 C 1.53005 * 110.34059 * 359.97438 * 15 2 1 17 17 C 1.53003 * 110.34311 * 237.74197 * 15 2 1 18 18 N 1.46494 * 109.47210 * 183.00530 * 17 15 2 19 19 C 1.36934 * 120.00025 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00002 * 359.97438 * 19 18 17 21 21 C 1.38816 * 120.00095 * 180.02562 * 19 18 17 22 22 N 1.31623 * 120.00052 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99997 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46612 * 90.00387 * 23 21 19 25 25 H 1.48494 * 109.47072 * 210.00292 * 23 21 19 26 26 H 1.48493 * 109.47008 * 330.00219 * 23 21 19 27 27 H 1.09003 * 109.47035 * 297.76660 * 1 2 3 28 28 H 1.09003 * 109.47140 * 57.77001 * 1 2 3 29 29 H 1.09002 * 109.47575 * 177.77332 * 1 2 3 30 30 H 1.08996 * 110.53999 * 146.48915 * 4 2 1 31 31 H 1.08997 * 110.46104 * 23.92622 * 4 2 1 32 32 H 1.09002 * 109.47060 * 299.99722 * 8 6 5 33 33 H 1.09001 * 109.47380 * 59.99809 * 8 6 5 34 34 H 1.09002 * 109.47153 * 299.99998 * 9 8 6 35 35 H 1.08998 * 109.47533 * 59.99628 * 9 8 6 36 36 H 1.09000 * 110.41001 * 158.62937 * 14 5 4 37 37 H 1.09002 * 110.40779 * 280.94522 * 14 5 4 38 38 H 1.09007 * 109.47003 * 176.99345 * 16 15 2 39 39 H 1.08994 * 109.47400 * 296.99508 * 16 15 2 40 40 H 1.09004 * 109.46830 * 56.99718 * 16 15 2 41 41 H 1.08993 * 109.46657 * 303.00681 * 17 15 2 42 42 H 1.08998 * 109.47140 * 63.00688 * 17 15 2 43 43 H 0.96996 * 120.00173 * 359.97438 * 18 17 15 44 44 H 0.96994 * 119.99665 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 6 2.0727 -0.7720 -1.2271 5 7 2.3138 -2.1438 -0.7227 6 6 2.0772 -3.3106 -1.3545 7 8 2.3359 -4.3608 -0.8058 8 6 1.4912 -3.3102 -2.7430 9 6 1.3249 -4.7521 -3.2267 10 6 0.7294 -4.7518 -4.6360 11 9 1.5851 -4.0646 -5.5037 12 9 0.5778 -6.0703 -5.0786 13 9 -0.5187 -4.1200 -4.6148 14 6 2.8801 -1.9422 0.6314 15 6 2.0663 -0.7716 1.2236 16 6 0.9061 -1.3031 2.0677 17 6 2.9692 0.1306 2.0674 18 7 3.5244 -0.6400 3.1827 19 6 4.3676 -0.0381 4.0781 20 1 4.6237 1.0047 3.9618 21 6 4.8942 -0.7684 5.1347 22 7 5.7051 -0.1899 5.9951 23 14 4.4519 -2.5721 5.3355 24 1 5.4316 -3.4073 4.5952 25 1 4.4831 -2.9321 6.7758 26 1 3.0896 -2.8108 4.7950 27 1 -0.3633 0.4788 0.9094 28 1 -0.3633 0.5481 -0.8693 29 1 -0.3634 -1.0269 -0.0399 30 1 3.0038 -0.3268 -1.5778 31 1 1.3321 -0.7857 -2.0267 32 1 0.5191 -2.8175 -2.7269 33 1 2.1585 -2.7753 -3.4188 34 1 2.2972 -5.2444 -3.2429 35 1 0.6579 -5.2874 -2.5510 36 1 2.7494 -2.8400 1.2356 37 1 3.9359 -1.6791 0.5665 38 1 1.2996 -1.8901 2.8976 39 1 0.3269 -0.4660 2.4573 40 1 0.2653 -1.9319 1.4495 41 1 3.7817 0.5118 1.4490 42 1 2.3866 0.9654 2.4570 43 1 3.2948 -1.5766 3.2870 44 1 6.0727 -0.7001 6.7335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180989008.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:53 Heat of formation + Delta-G solvation = -204.820186 kcal Electronic energy + Delta-G solvation = -28354.167126 eV Core-core repulsion = 23890.627033 eV Total energy + Delta-G solvation = -4463.540093 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -51.09157 -48.59993 -48.56118 -41.53200 -39.66329 -36.64953 -34.86568 -34.49531 -33.30441 -31.51531 -29.22153 -28.27897 -26.72363 -26.55487 -24.70381 -23.45957 -22.37401 -20.50734 -20.20035 -19.58241 -19.54643 -18.99342 -18.66286 -17.45945 -17.34489 -16.60522 -16.40795 -16.26696 -15.58856 -15.50639 -15.45355 -15.24043 -15.15538 -15.00087 -14.73027 -14.72703 -14.63764 -14.37132 -14.25406 -13.88834 -13.61092 -13.49338 -13.32884 -13.13406 -12.94313 -12.74242 -12.62030 -12.53105 -12.41749 -12.35999 -12.10350 -11.87749 -11.50429 -11.45550 -11.23237 -11.03019 -10.96604 -9.76637 -9.28678 -8.04442 -5.35844 1.34021 1.35936 1.42113 1.53338 1.61950 1.98800 2.44758 2.82029 2.99777 3.09274 3.27722 3.32317 3.54803 3.61972 3.77064 3.85193 3.96268 4.00328 4.23599 4.26097 4.31859 4.38191 4.54805 4.62196 4.65644 4.69787 4.78405 4.80188 4.83250 4.91962 5.02483 5.05806 5.07411 5.11499 5.26235 5.36896 5.43146 5.60415 5.76166 6.20457 6.54241 7.04477 7.07304 7.84839 8.01339 9.17355 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.020401 B = 0.002928 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.165229 B = 9559.086769 C =10303.638648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 H 0.102 0.898 4 C 0.102 3.898 5 N -0.616 5.616 6 C 0.531 3.469 7 O -0.589 6.589 8 C -0.131 4.131 9 C -0.148 4.148 10 C 0.461 3.539 11 F -0.185 7.185 12 F -0.190 7.190 13 F -0.184 7.184 14 C 0.116 3.884 15 C -0.072 4.072 16 C -0.129 4.129 17 C 0.169 3.831 18 N -0.758 5.758 19 C -0.226 4.226 20 H 0.063 0.937 21 C -0.060 4.060 22 N -0.983 5.983 23 Si 0.942 3.058 24 H -0.283 1.283 25 H -0.294 1.294 26 H -0.257 1.257 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.052 0.948 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.028 0.972 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.032 0.968 42 H 0.033 0.967 43 H 0.363 0.637 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.288 -3.994 -25.947 30.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.110 4.110 3 H 0.120 0.880 4 C -0.020 4.020 5 N -0.349 5.349 6 C 0.322 3.678 7 O -0.470 6.470 8 C -0.170 4.170 9 C -0.187 4.187 10 C 0.407 3.593 11 F -0.167 7.167 12 F -0.172 7.172 13 F -0.166 7.166 14 C -0.008 4.008 15 C -0.074 4.074 16 C -0.186 4.186 17 C 0.043 3.957 18 N -0.403 5.403 19 C -0.357 4.357 20 H 0.081 0.919 21 C -0.251 4.251 22 N -0.634 5.634 23 Si 0.770 3.230 24 H -0.209 1.209 25 H -0.220 1.220 26 H -0.182 1.182 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.134 0.866 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.047 0.953 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.196 0.804 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.088 -4.459 -25.691 30.126 hybrid contribution 0.387 -1.141 0.882 1.493 sum -14.701 -5.600 -24.808 29.376 Atomic orbital electron populations 1.21893 0.92929 1.01977 1.02863 1.22216 0.97433 0.99747 0.91627 0.87961 1.22909 1.02586 0.79320 0.97170 1.49034 1.62119 1.06853 1.16877 1.20578 0.77523 0.81559 0.88136 1.90735 1.55038 1.32092 1.69154 1.21603 1.05619 0.97122 0.92697 1.22569 1.05794 1.00133 0.90189 1.20507 0.76205 0.73053 0.89549 1.93190 1.70360 1.79904 1.73205 1.93190 1.95730 1.36995 1.91271 1.93191 1.44029 1.82395 1.96958 1.22284 0.97210 0.97819 0.83452 1.21647 0.95229 0.94710 0.95782 1.21853 0.97226 1.01030 0.98484 1.20897 0.94190 0.93107 0.87478 1.42795 1.56556 1.10318 1.30665 1.19061 1.17923 0.95499 1.03217 0.91908 1.25371 1.00133 1.01836 0.97790 1.69856 1.37988 1.37547 1.17973 0.85601 0.78877 0.81682 0.76795 1.20903 1.22049 1.18216 0.92423 0.90220 0.92850 0.89312 0.86550 0.85117 0.85319 0.86673 0.86566 0.92906 0.91593 0.95334 0.91184 0.91549 0.94960 0.94905 0.80401 0.93391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 7.94 71.98 0.57 -1.26 16 2 C -0.09 -1.48 3.31 -9.75 -0.03 -1.52 16 3 H 0.10 1.52 7.71 -2.39 -0.02 1.51 16 4 C 0.10 1.34 6.49 86.68 0.56 1.90 16 5 N -0.62 -13.05 3.31 -807.17 -2.67 -15.73 16 6 C 0.53 11.64 7.91 87.66 0.69 12.33 16 7 O -0.59 -18.57 16.25 -3.03 -0.05 -18.62 16 8 C -0.13 -1.53 4.43 29.85 0.13 -1.40 16 9 C -0.15 -1.90 4.55 30.59 0.14 -1.76 16 10 C 0.46 6.04 3.16 71.98 0.23 6.27 16 11 F -0.19 -2.56 16.80 44.97 0.76 -1.81 16 12 F -0.19 -3.06 17.32 44.97 0.78 -2.28 16 13 F -0.18 -2.49 16.80 44.97 0.76 -1.74 16 14 C 0.12 3.31 5.54 86.53 0.48 3.79 16 15 C -0.07 -1.87 0.73 -51.27 -0.04 -1.91 16 16 C -0.13 -3.44 7.08 71.98 0.51 -2.93 16 17 C 0.17 5.84 4.85 86.38 0.42 6.26 16 18 N -0.76 -34.48 4.93 -343.47 -1.69 -36.18 16 19 C -0.23 -12.73 10.47 84.03 0.88 -11.85 16 20 H 0.06 3.83 8.06 -2.91 -0.02 3.80 16 21 C -0.06 -3.54 5.50 84.86 0.47 -3.08 16 22 N -0.98 -63.23 13.97 21.65 0.30 -62.93 16 23 Si 0.94 46.71 27.74 68.60 1.90 48.61 16 24 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 25 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 26 H -0.26 -11.73 6.52 99.48 0.65 -11.08 16 27 H 0.06 0.86 6.88 -2.39 -0.02 0.85 16 28 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.05 0.76 6.72 -2.39 -0.02 0.74 16 30 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.12 0.74 7.04 -2.39 -0.02 0.72 16 32 H 0.13 0.94 7.62 -2.39 -0.02 0.92 16 33 H 0.13 0.99 7.80 -2.39 -0.02 0.97 16 34 H 0.11 1.59 8.10 -2.39 -0.02 1.57 16 35 H 0.12 1.57 8.10 -2.39 -0.02 1.55 16 36 H 0.05 1.81 7.60 -2.39 -0.02 1.79 16 37 H 0.07 2.07 7.87 -2.39 -0.02 2.05 16 38 H 0.03 0.92 7.01 -2.38 -0.02 0.90 16 39 H 0.07 1.74 6.98 -2.39 -0.02 1.72 16 40 H 0.07 1.56 6.61 -2.39 -0.02 1.55 16 41 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.03 1.14 8.14 -2.39 -0.02 1.13 16 43 H 0.36 16.37 4.14 -92.71 -0.38 15.99 16 44 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -74.15 358.93 5.67 -68.48 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.58 Total: 17.34 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 5.01 Total: 4.85 kcal Atomic # 7 Polarization: -110.77 SS G_CDS: -4.06 Total: -114.84 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.05 Total: -18.62 kcal Atomic # 9 Polarization: -8.12 SS G_CDS: 2.29 Total: -5.83 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 1.90 Total: 48.61 kcal Total: -74.15 5.67 -68.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180989008.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.342 kcal (2) G-P(sol) polarization free energy of solvation -74.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds