Wall clock time and date at job start Tue Mar 31 2020 16:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47305 * 2 1 4 4 C 1.50701 * 109.47103 * 239.99494 * 2 1 3 5 5 O 1.21277 * 120.00192 * 325.69079 * 4 2 1 6 6 N 1.34776 * 119.99347 * 145.68797 * 4 2 1 7 7 C 1.48139 * 127.84485 * 5.06670 * 6 4 2 8 8 C 1.54389 * 104.61939 * 219.58706 * 7 6 4 9 9 H 1.08999 * 110.34737 * 95.00178 * 8 7 6 10 10 C 1.53001 * 110.34097 * 217.26199 * 8 7 6 11 11 C 1.54286 * 104.95931 * 336.12692 * 8 7 6 12 12 C 1.52994 * 110.34629 * 241.12757 * 11 8 7 13 13 C 1.53009 * 110.34003 * 118.97915 * 11 8 7 14 14 N 1.46499 * 109.47119 * 180.02562 * 13 11 8 15 15 C 1.36933 * 120.00117 * 179.97438 * 14 13 11 16 16 H 1.08003 * 119.99728 * 0.02562 * 15 14 13 17 17 C 1.38808 * 119.99936 * 179.97438 * 15 14 13 18 18 N 1.31617 * 120.00445 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99741 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47250 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47592 * 119.99828 * 19 17 15 22 22 H 1.48500 * 109.47048 * 239.99979 * 19 17 15 23 23 C 1.48152 * 127.83232 * 184.74493 * 6 4 2 24 24 C 1.53005 * 109.46945 * 120.00204 * 2 1 3 25 25 F 1.39896 * 109.47319 * 59.99854 * 24 2 1 26 26 F 1.39898 * 109.47267 * 180.02562 * 24 2 1 27 27 F 1.39903 * 109.46476 * 299.99711 * 24 2 1 28 28 H 1.08998 * 109.47254 * 184.99595 * 1 2 3 29 29 H 1.09000 * 109.46850 * 304.99515 * 1 2 3 30 30 H 1.09005 * 109.46718 * 64.99382 * 1 2 3 31 31 H 1.09002 * 110.40829 * 338.36608 * 7 6 4 32 32 H 1.09001 * 110.40919 * 100.68085 * 7 6 4 33 33 H 1.08996 * 109.47594 * 58.54770 * 10 8 7 34 34 H 1.08999 * 109.47183 * 178.54594 * 10 8 7 35 35 H 1.09002 * 109.46852 * 298.54130 * 10 8 7 36 36 H 1.09003 * 109.46682 * 60.00470 * 12 11 8 37 37 H 1.08996 * 109.47500 * 180.02562 * 12 11 8 38 38 H 1.09001 * 109.47655 * 300.00281 * 12 11 8 39 39 H 1.09009 * 109.46836 * 300.00119 * 13 11 8 40 40 H 1.08999 * 109.47037 * 59.99632 * 13 11 8 41 41 H 0.97002 * 119.99914 * 359.97438 * 14 13 11 42 42 H 0.96998 * 120.00409 * 179.97438 * 18 17 15 43 43 H 1.08993 * 110.40923 * 259.19946 * 23 6 4 44 44 H 1.08997 * 110.40765 * 21.63589 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 1.4166 -1.6537 -1.6799 6 7 3.1659 -0.2977 -1.8312 7 6 4.1025 0.7569 -1.3783 8 6 4.5141 1.4940 -2.6709 9 1 3.8864 2.3721 -2.8227 10 6 5.9886 1.8974 -2.6066 11 6 4.2871 0.4702 -3.8026 12 6 5.6049 0.1679 -4.5187 13 6 3.2513 0.9981 -4.7975 14 7 3.0501 0.0122 -5.8622 15 6 2.1618 0.2673 -6.8726 16 1 1.6098 1.1955 -6.8848 17 6 1.9716 -0.6666 -7.8818 18 7 2.6454 -1.7972 -7.8678 19 14 0.7604 -0.3183 -9.2606 20 1 0.1363 1.0122 -9.0469 21 1 1.4757 -0.3267 -10.5619 22 1 -0.2944 -1.3636 -9.2687 23 6 3.7615 -0.8001 -3.0913 24 6 2.0400 -0.7213 1.2493 25 9 1.5736 -2.0403 1.2493 26 9 3.4390 -0.7209 1.2496 27 9 1.5736 -0.0617 2.3915 28 1 -0.3633 -1.0237 0.0895 29 1 -0.3633 0.5894 0.8419 30 1 -0.3633 0.4344 -0.9314 31 1 3.6018 1.4415 -0.6936 32 1 4.9740 0.3110 -0.8989 33 1 6.6030 1.0078 -2.4687 34 1 6.2705 2.3931 -3.5356 35 1 6.1426 2.5788 -1.7700 36 1 6.3197 -0.2431 -3.8058 37 1 5.4283 -0.5555 -5.3146 38 1 6.0055 1.0871 -4.9460 39 1 2.3073 1.1723 -4.2809 40 1 3.6067 1.9333 -5.2300 41 1 3.5462 -0.8213 -5.8515 42 1 2.5123 -2.4499 -8.5728 43 1 4.5815 -1.4856 -2.8773 44 1 3.0031 -1.2918 -3.7005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182293909.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:57 Heat of formation + Delta-G solvation = -176.860578 kcal Electronic energy + Delta-G solvation = -29432.943713 eV Core-core repulsion = 24970.616040 eV Total energy + Delta-G solvation = -4462.327673 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.37117 -47.88347 -47.79290 -40.44750 -38.55500 -34.84440 -34.02627 -33.25418 -31.55588 -29.64483 -27.42460 -26.59972 -25.91783 -25.64397 -23.55959 -22.86440 -21.18764 -19.70041 -18.86083 -18.64571 -18.40357 -17.80142 -17.29872 -16.80485 -15.62588 -15.49518 -14.90721 -14.72175 -14.66599 -14.43601 -14.25622 -14.07737 -13.96736 -13.93287 -13.91922 -13.63682 -13.34376 -13.04492 -12.91394 -12.79105 -12.57131 -12.25862 -12.02213 -11.89239 -11.63913 -11.55472 -11.44889 -11.23967 -10.98290 -10.83313 -10.50894 -10.34344 -10.18806 -9.93454 -9.90261 -9.60209 -8.87157 -8.68550 -6.90326 -5.74958 -3.03297 2.03515 2.66424 2.82352 3.44853 3.50293 3.52182 3.52605 3.69954 3.77841 4.30067 4.47910 4.53692 4.60100 4.62941 4.76082 4.89604 5.23275 5.31999 5.33144 5.36711 5.43767 5.46522 5.53580 5.63423 5.70030 5.82662 5.86104 5.90028 5.99446 6.07838 6.14411 6.19259 6.24016 6.40175 6.50147 6.66844 6.76801 6.84904 7.49549 7.71814 8.02509 8.43808 9.55341 10.12045 10.46538 11.47996 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.015045 B = 0.003879 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.670752 B = 7216.055229 C = 8364.782771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.157 4.157 3 H 0.131 0.869 4 C 0.535 3.465 5 O -0.508 6.508 6 N -0.612 5.612 7 C 0.102 3.898 8 C -0.098 4.098 9 H 0.083 0.917 10 C -0.142 4.142 11 C -0.075 4.075 12 C -0.134 4.134 13 C 0.169 3.831 14 N -0.729 5.729 15 C -0.239 4.239 16 H 0.069 0.931 17 C -0.012 4.012 18 N -0.932 5.932 19 Si 0.905 3.095 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C 0.114 3.886 24 C 0.465 3.535 25 F -0.170 7.170 26 F -0.179 7.179 27 F -0.178 7.178 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.016 0.984 40 H 0.021 0.979 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.070 0.930 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.393 7.558 20.281 22.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.180 4.180 3 H 0.148 0.852 4 C 0.321 3.679 5 O -0.382 6.382 6 N -0.345 5.345 7 C -0.021 4.021 8 C -0.118 4.118 9 H 0.102 0.898 10 C -0.199 4.199 11 C -0.077 4.077 12 C -0.192 4.192 13 C 0.042 3.958 14 N -0.374 5.374 15 C -0.370 4.370 16 H 0.087 0.913 17 C -0.208 4.208 18 N -0.581 5.581 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.007 4.007 24 C 0.410 3.590 25 F -0.151 7.151 26 F -0.161 7.161 27 F -0.159 7.159 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.034 0.966 40 H 0.039 0.961 41 H 0.219 0.781 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.834 7.054 20.008 21.559 hybrid contribution -0.378 -0.091 -0.554 0.677 sum 3.456 6.962 19.454 20.949 Atomic orbital electron populations 1.21736 0.88689 1.05056 1.04417 1.22658 1.02065 1.02381 0.90878 0.85154 1.19234 0.80008 0.84177 0.84519 1.90806 1.55993 1.26971 1.64386 1.48884 1.22033 1.38098 1.25474 1.22623 0.92905 0.89547 0.97040 1.22153 0.97694 0.98310 0.93628 0.89843 1.21891 0.94766 1.01377 1.01893 1.21794 0.97146 0.93956 0.94770 1.21873 0.94713 1.02405 1.00183 1.20642 0.93906 0.92685 0.88601 1.42399 1.50205 1.19467 1.25357 1.19231 1.15455 1.01681 1.00639 0.91301 1.24709 1.00282 0.96603 0.99186 1.69654 1.44646 1.08723 1.35029 0.86144 0.80674 0.77293 0.82228 1.20636 1.21894 1.21872 1.22697 0.98417 0.96031 0.83600 1.20070 0.75570 0.78192 0.85131 1.93244 1.88258 1.36950 1.96680 1.93210 1.29678 1.96428 1.96764 1.93194 1.88475 1.80738 1.53529 0.89968 0.90438 0.89599 0.90868 0.90390 0.91969 0.91664 0.92998 0.93028 0.91217 0.92098 0.96595 0.96114 0.78079 0.93556 0.91197 0.88095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.52 37.16 0.32 -1.11 16 2 C -0.16 -1.72 2.37 -91.77 -0.22 -1.93 16 3 H 0.13 1.04 6.45 -51.93 -0.33 0.70 16 4 C 0.54 8.18 6.40 -10.98 -0.07 8.11 16 5 O -0.51 -10.00 16.62 5.56 0.09 -9.91 16 6 N -0.61 -8.69 3.31 -169.06 -0.56 -9.25 16 7 C 0.10 1.06 6.06 -2.41 -0.01 1.04 16 8 C -0.10 -1.09 3.31 -89.22 -0.30 -1.38 16 9 H 0.08 0.92 7.71 -51.93 -0.40 0.52 16 10 C -0.14 -1.27 7.93 37.16 0.29 -0.97 16 11 C -0.08 -1.12 0.73 -152.89 -0.11 -1.24 16 12 C -0.13 -1.91 7.10 37.15 0.26 -1.65 16 13 C 0.17 3.30 4.96 -4.04 -0.02 3.28 16 14 N -0.73 -18.07 4.80 -59.90 -0.29 -18.36 16 15 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 16 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 17 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 18 N -0.93 -28.24 13.06 55.49 0.72 -27.52 16 19 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 23 C 0.11 1.85 5.92 -2.19 -0.01 1.84 16 24 C 0.47 5.22 2.68 37.16 0.10 5.32 16 25 F -0.17 -2.28 16.39 2.25 0.04 -2.24 16 26 F -0.18 -2.03 16.61 2.25 0.04 -1.99 16 27 F -0.18 -1.79 16.89 2.25 0.04 -1.75 16 28 H 0.08 0.94 7.54 -51.93 -0.39 0.55 16 29 H 0.08 0.57 7.94 -51.93 -0.41 0.16 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.59 6.45 -51.93 -0.33 0.25 16 32 H 0.08 0.73 7.87 -51.93 -0.41 0.33 16 33 H 0.06 0.54 6.61 -51.93 -0.34 0.20 16 34 H 0.06 0.61 6.98 -51.93 -0.36 0.25 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.05 0.61 6.67 -51.93 -0.35 0.26 16 37 H 0.07 1.21 6.74 -51.93 -0.35 0.86 16 38 H 0.06 0.83 6.89 -51.93 -0.36 0.47 16 39 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.38 9.95 5.99 -40.82 -0.24 9.71 16 42 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.07 1.04 7.84 -51.93 -0.41 0.64 16 44 H 0.10 2.09 7.01 -51.93 -0.36 1.72 16 LS Contribution 357.44 15.07 5.39 5.39 Total: -1.00 -32.85 357.44 -5.87 -38.72 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.30 Total: 5.26 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -0.01 Total: 4.03 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.12 Total: -55.13 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 0.11 Total: -5.99 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.85 -5.87 -38.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182293909.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.142 kcal (2) G-P(sol) polarization free energy of solvation -32.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds