Wall clock time and date at job start Tue Mar 31 2020 16:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47305 * 2 1 4 4 C 1.50701 * 109.47103 * 239.99494 * 2 1 3 5 5 O 1.21277 * 120.00192 * 325.69079 * 4 2 1 6 6 N 1.34776 * 119.99347 * 145.68797 * 4 2 1 7 7 C 1.48139 * 127.84485 * 5.06670 * 6 4 2 8 8 C 1.54389 * 104.61939 * 219.58706 * 7 6 4 9 9 H 1.08999 * 110.34737 * 95.00178 * 8 7 6 10 10 C 1.53001 * 110.34097 * 217.26199 * 8 7 6 11 11 C 1.54286 * 104.95931 * 336.12692 * 8 7 6 12 12 C 1.52994 * 110.34629 * 241.12757 * 11 8 7 13 13 C 1.53009 * 110.34003 * 118.97915 * 11 8 7 14 14 N 1.46499 * 109.47119 * 180.02562 * 13 11 8 15 15 C 1.36933 * 120.00117 * 179.97438 * 14 13 11 16 16 H 1.08003 * 119.99728 * 0.02562 * 15 14 13 17 17 C 1.38808 * 119.99936 * 179.97438 * 15 14 13 18 18 N 1.31617 * 120.00445 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99741 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47250 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47592 * 119.99828 * 19 17 15 22 22 H 1.48500 * 109.47048 * 239.99979 * 19 17 15 23 23 C 1.48152 * 127.83232 * 184.74493 * 6 4 2 24 24 C 1.53005 * 109.46945 * 120.00204 * 2 1 3 25 25 F 1.39896 * 109.47319 * 59.99854 * 24 2 1 26 26 F 1.39898 * 109.47267 * 180.02562 * 24 2 1 27 27 F 1.39903 * 109.46476 * 299.99711 * 24 2 1 28 28 H 1.08998 * 109.47254 * 184.99595 * 1 2 3 29 29 H 1.09000 * 109.46850 * 304.99515 * 1 2 3 30 30 H 1.09005 * 109.46718 * 64.99382 * 1 2 3 31 31 H 1.09002 * 110.40829 * 338.36608 * 7 6 4 32 32 H 1.09001 * 110.40919 * 100.68085 * 7 6 4 33 33 H 1.08996 * 109.47594 * 58.54770 * 10 8 7 34 34 H 1.08999 * 109.47183 * 178.54594 * 10 8 7 35 35 H 1.09002 * 109.46852 * 298.54130 * 10 8 7 36 36 H 1.09003 * 109.46682 * 60.00470 * 12 11 8 37 37 H 1.08996 * 109.47500 * 180.02562 * 12 11 8 38 38 H 1.09001 * 109.47655 * 300.00281 * 12 11 8 39 39 H 1.09009 * 109.46836 * 300.00119 * 13 11 8 40 40 H 1.08999 * 109.47037 * 59.99632 * 13 11 8 41 41 H 0.97002 * 119.99914 * 359.97438 * 14 13 11 42 42 H 0.96998 * 120.00409 * 179.97438 * 18 17 15 43 43 H 1.08993 * 110.40923 * 259.19946 * 23 6 4 44 44 H 1.08997 * 110.40765 * 21.63589 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 1.4166 -1.6537 -1.6799 6 7 3.1659 -0.2977 -1.8312 7 6 4.1025 0.7569 -1.3783 8 6 4.5141 1.4940 -2.6709 9 1 3.8864 2.3721 -2.8227 10 6 5.9886 1.8974 -2.6066 11 6 4.2871 0.4702 -3.8026 12 6 5.6049 0.1679 -4.5187 13 6 3.2513 0.9981 -4.7975 14 7 3.0501 0.0122 -5.8622 15 6 2.1618 0.2673 -6.8726 16 1 1.6098 1.1955 -6.8848 17 6 1.9716 -0.6666 -7.8818 18 7 2.6454 -1.7972 -7.8678 19 14 0.7604 -0.3183 -9.2606 20 1 0.1363 1.0122 -9.0469 21 1 1.4757 -0.3267 -10.5619 22 1 -0.2944 -1.3636 -9.2687 23 6 3.7615 -0.8001 -3.0913 24 6 2.0400 -0.7213 1.2493 25 9 1.5736 -2.0403 1.2493 26 9 3.4390 -0.7209 1.2496 27 9 1.5736 -0.0617 2.3915 28 1 -0.3633 -1.0237 0.0895 29 1 -0.3633 0.5894 0.8419 30 1 -0.3633 0.4344 -0.9314 31 1 3.6018 1.4415 -0.6936 32 1 4.9740 0.3110 -0.8989 33 1 6.6030 1.0078 -2.4687 34 1 6.2705 2.3931 -3.5356 35 1 6.1426 2.5788 -1.7700 36 1 6.3197 -0.2431 -3.8058 37 1 5.4283 -0.5555 -5.3146 38 1 6.0055 1.0871 -4.9460 39 1 2.3073 1.1723 -4.2809 40 1 3.6067 1.9333 -5.2300 41 1 3.5462 -0.8213 -5.8515 42 1 2.5123 -2.4499 -8.5728 43 1 4.5815 -1.4856 -2.8773 44 1 3.0031 -1.2918 -3.7005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182293909.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:56 Heat of formation + Delta-G solvation = -198.140583 kcal Electronic energy + Delta-G solvation = -29433.866484 eV Core-core repulsion = 24970.616040 eV Total energy + Delta-G solvation = -4463.250443 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -51.25723 -48.73821 -48.71727 -41.59843 -39.76504 -36.52590 -35.14596 -34.50153 -33.15921 -31.18607 -28.47347 -27.76090 -27.19971 -26.72246 -25.26225 -24.00114 -22.43173 -20.73737 -19.81130 -19.74720 -19.54069 -19.17940 -18.53473 -18.10037 -16.75552 -16.65658 -16.64127 -15.98430 -15.60852 -15.56164 -15.32958 -15.18259 -15.14203 -14.99545 -14.88210 -14.83793 -14.58725 -14.50461 -14.17270 -13.96382 -13.44811 -13.34943 -13.09960 -12.99643 -12.92409 -12.84189 -12.64583 -12.61552 -12.48836 -12.26964 -12.04703 -11.96020 -11.60663 -11.27457 -11.17134 -11.13599 -10.96187 -9.86270 -8.99220 -7.96397 -5.24115 0.99580 1.43927 1.45646 1.54979 1.59246 1.83003 2.54113 2.62320 2.79905 2.87811 3.35267 3.38175 3.54281 3.57755 3.72105 3.76873 3.87530 4.16071 4.22532 4.34521 4.39314 4.52107 4.58185 4.63978 4.65419 4.70269 4.80815 4.85903 4.89421 5.01253 5.04157 5.08302 5.13250 5.19993 5.31278 5.41918 5.46707 5.48340 5.67891 6.26198 6.38952 6.87032 7.32822 8.09820 8.32240 9.27414 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.015045 B = 0.003879 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.670752 B = 7216.055229 C = 8364.782771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.147 4.147 3 H 0.170 0.830 4 C 0.525 3.475 5 O -0.567 6.567 6 N -0.612 5.612 7 C 0.098 3.902 8 C -0.088 4.088 9 H 0.088 0.912 10 C -0.138 4.138 11 C -0.068 4.068 12 C -0.127 4.127 13 C 0.169 3.831 14 N -0.740 5.740 15 C -0.244 4.244 16 H 0.072 0.928 17 C -0.074 4.074 18 N -0.968 5.968 19 Si 0.970 3.030 20 H -0.266 1.266 21 H -0.290 1.290 22 H -0.297 1.297 23 C 0.115 3.885 24 C 0.469 3.531 25 F -0.188 7.188 26 F -0.178 7.178 27 F -0.166 7.166 28 H 0.060 0.940 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.029 0.971 38 H 0.070 0.930 39 H 0.003 0.997 40 H 0.027 0.973 41 H 0.375 0.625 42 H 0.250 0.750 43 H 0.081 0.919 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.367 10.346 22.386 25.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.169 4.169 3 H 0.187 0.813 4 C 0.312 3.688 5 O -0.446 6.446 6 N -0.344 5.344 7 C -0.023 4.023 8 C -0.108 4.108 9 H 0.107 0.893 10 C -0.195 4.195 11 C -0.069 4.069 12 C -0.185 4.185 13 C 0.043 3.957 14 N -0.384 5.384 15 C -0.376 4.376 16 H 0.090 0.910 17 C -0.266 4.266 18 N -0.619 5.619 19 Si 0.799 3.201 20 H -0.190 1.190 21 H -0.217 1.217 22 H -0.225 1.225 23 C -0.008 4.008 24 C 0.414 3.586 25 F -0.169 7.169 26 F -0.159 7.159 27 F -0.148 7.148 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.098 0.902 31 H 0.126 0.874 32 H 0.116 0.884 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.021 0.979 40 H 0.045 0.955 41 H 0.208 0.792 42 H 0.059 0.941 43 H 0.099 0.901 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.836 9.915 22.153 24.747 hybrid contribution -0.667 -0.928 -1.162 1.629 sum 4.169 8.987 20.991 23.212 Atomic orbital electron populations 1.21774 0.88228 1.04388 1.05509 1.22693 1.02409 1.03500 0.88284 0.81257 1.20050 0.79607 0.83667 0.85442 1.90776 1.57727 1.29695 1.66378 1.49036 1.22234 1.38573 1.24527 1.22963 0.93071 0.88995 0.97236 1.22141 0.99795 0.97077 0.91803 0.89332 1.21877 0.92565 1.02182 1.02913 1.21688 0.95766 0.94522 0.94926 1.21826 0.95025 1.01921 0.99699 1.20790 0.94848 0.91863 0.88230 1.42603 1.49523 1.20202 1.26053 1.19636 1.15318 1.01488 1.01132 0.90973 1.25521 1.02528 0.96681 1.01893 1.69814 1.46534 1.09728 1.35846 0.85120 0.78292 0.77449 0.79196 1.19031 1.21660 1.22458 1.22506 0.97181 0.96761 0.84373 1.20038 0.75584 0.77499 0.85487 1.93218 1.88506 1.38417 1.96780 1.93211 1.29537 1.96368 1.96792 1.93218 1.88350 1.80339 1.52861 0.92047 0.87084 0.90229 0.87385 0.88414 0.91452 0.92063 0.90269 0.89964 0.95150 0.91119 0.97884 0.95512 0.79162 0.94076 0.90075 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 8.52 71.98 0.61 -2.04 16 2 C -0.15 -2.88 2.37 -11.54 -0.03 -2.91 16 3 H 0.17 1.92 6.45 -2.39 -0.02 1.91 16 4 C 0.52 15.92 6.40 87.66 0.56 16.48 16 5 O -0.57 -23.54 16.62 -3.02 -0.05 -23.59 16 6 N -0.61 -16.74 3.31 -807.17 -2.67 -19.41 16 7 C 0.10 1.66 6.06 86.54 0.52 2.18 16 8 C -0.09 -1.67 3.31 -9.89 -0.03 -1.70 16 9 H 0.09 1.63 7.71 -2.39 -0.02 1.61 16 10 C -0.14 -1.85 7.93 71.98 0.57 -1.28 16 11 C -0.07 -1.97 0.73 -51.13 -0.04 -2.01 16 12 C -0.13 -3.52 7.10 71.98 0.51 -3.01 16 13 C 0.17 6.66 4.96 86.38 0.43 7.09 16 14 N -0.74 -38.10 4.80 -343.43 -1.65 -39.74 16 15 C -0.24 -13.97 9.99 84.03 0.84 -13.13 16 16 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 17 C -0.07 -4.36 5.50 84.86 0.47 -3.90 16 18 N -0.97 -60.87 13.06 21.65 0.28 -60.58 16 19 Si 0.97 47.48 29.55 68.60 2.03 49.50 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 21 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 22 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 23 C 0.11 3.79 5.92 86.67 0.51 4.30 16 24 C 0.47 9.48 2.68 71.98 0.19 9.67 16 25 F -0.19 -4.96 16.39 44.97 0.74 -4.23 16 26 F -0.18 -3.51 16.61 44.97 0.75 -2.76 16 27 F -0.17 -2.83 16.89 44.97 0.76 -2.07 16 28 H 0.06 1.42 7.54 -2.39 -0.02 1.40 16 29 H 0.11 1.31 7.94 -2.39 -0.02 1.29 16 30 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.11 1.12 6.45 -2.39 -0.02 1.11 16 32 H 0.10 1.36 7.87 -2.39 -0.02 1.34 16 33 H 0.07 0.86 6.61 -2.39 -0.02 0.84 16 34 H 0.06 0.91 6.98 -2.39 -0.02 0.89 16 35 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.08 1.75 6.67 -2.39 -0.02 1.74 16 37 H 0.03 1.07 6.74 -2.39 -0.02 1.06 16 38 H 0.07 1.80 6.89 -2.39 -0.02 1.79 16 39 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 40 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.38 20.55 5.99 -92.71 -0.56 19.99 16 42 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 43 H 0.08 2.45 7.84 -2.39 -0.02 2.43 16 44 H 0.05 2.03 7.01 -2.39 -0.02 2.02 16 Total: -1.00 -76.41 357.44 5.78 -70.63 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.47 Total: 22.49 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 5.12 Total: 9.76 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -4.04 Total: -119.74 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.05 Total: -23.59 kcal Atomic # 9 Polarization: -11.30 SS G_CDS: 2.24 Total: -9.05 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.50 kcal Total: -76.41 5.78 -70.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182293909.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.511 kcal (2) G-P(sol) polarization free energy of solvation -76.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds