Wall clock time and date at job start Tue Mar 31 2020 16:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35377 * 116.99604 * 2 1 4 4 C 1.36091 * 125.57501 * 179.97438 * 3 2 1 5 5 C 1.39915 * 107.17510 * 179.97438 * 4 3 2 6 6 C 1.37830 * 106.67292 * 359.97438 * 5 4 3 7 7 C 1.46133 * 126.02726 * 179.97438 * 6 5 4 8 8 O 1.21766 * 120.00022 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99973 * 180.02562 * 7 6 5 10 10 C 1.48140 * 127.83801 * 0.02562 * 9 7 6 11 11 C 1.54388 * 104.61956 * 219.59026 * 10 9 7 12 12 H 1.08997 * 110.34666 * 95.00269 * 11 10 9 13 13 C 1.53007 * 110.34356 * 217.26431 * 11 10 9 14 14 C 1.54289 * 104.95857 * 336.12930 * 11 10 9 15 15 C 1.52997 * 110.34555 * 241.02546 * 14 11 10 16 16 C 1.53006 * 110.33986 * 118.87210 * 14 11 10 17 17 N 1.46498 * 109.47108 * 180.02562 * 16 14 11 18 18 C 1.36934 * 120.00018 * 180.02562 * 17 16 14 19 19 H 1.08003 * 120.00014 * 0.02562 * 18 17 16 20 20 C 1.38810 * 119.99976 * 180.02562 * 18 17 16 21 21 N 1.31616 * 120.00156 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 119.99972 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47481 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47432 * 119.99892 * 22 20 18 25 25 H 1.48502 * 109.47133 * 239.99795 * 22 20 18 26 26 C 1.48141 * 127.83653 * 179.71042 * 9 7 6 27 27 O 1.34006 * 125.58120 * 359.97438 * 3 2 1 28 28 H 1.09008 * 109.46732 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47711 * 300.00268 * 1 2 3 30 30 H 1.09001 * 109.47415 * 60.00473 * 1 2 3 31 31 H 1.08003 * 126.41737 * 359.97438 * 4 3 2 32 32 H 1.07999 * 126.66223 * 179.73964 * 5 4 3 33 33 H 1.09006 * 110.40816 * 338.37003 * 10 9 7 34 34 H 1.09003 * 110.40689 * 100.79882 * 10 9 7 35 35 H 1.09002 * 109.46855 * 58.54012 * 13 11 10 36 36 H 1.08995 * 109.47185 * 178.54551 * 13 11 10 37 37 H 1.08999 * 109.46942 * 298.54829 * 13 11 10 38 38 H 1.08998 * 109.46702 * 60.00045 * 15 14 11 39 39 H 1.09003 * 109.47171 * 180.02562 * 15 14 11 40 40 H 1.08998 * 109.47247 * 300.00029 * 15 14 11 41 41 H 1.08999 * 109.47145 * 300.00520 * 16 14 11 42 42 H 1.09001 * 109.46796 * 59.99894 * 16 14 11 43 43 H 0.96996 * 119.99722 * 0.02562 * 17 16 14 44 44 H 0.97002 * 120.00427 * 180.02562 * 21 20 18 45 45 H 1.08996 * 110.40844 * 259.19366 * 26 9 7 46 46 H 1.09000 * 110.40806 * 21.63104 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0435 1.2063 0.0000 4 6 3.3891 1.4093 0.0005 5 6 3.5983 2.7927 -0.0003 6 6 2.3519 3.3811 -0.0019 7 6 2.0791 4.8167 -0.0026 8 8 3.0014 5.6117 -0.0023 9 7 0.8066 5.2609 -0.0036 10 6 -0.4369 4.4558 -0.0036 11 6 -1.3892 5.2096 -0.9567 12 1 -1.3329 4.7879 -1.9603 13 6 -2.8253 5.1478 -0.4324 14 6 -0.8808 6.6663 -0.9577 15 6 -1.9672 7.6092 -0.4365 16 6 -0.4512 7.0788 -2.3671 17 7 0.0281 8.4629 -2.3460 18 6 0.4676 9.0530 -3.5009 19 1 0.4605 8.4980 -4.4274 20 6 0.9222 10.3643 -3.4808 21 7 0.9304 11.0408 -2.3519 22 14 1.5211 11.1694 -5.0564 23 1 1.4101 10.2037 -6.1790 24 1 0.6906 12.3655 -5.3478 25 1 2.9394 11.5790 -4.8949 26 6 0.3342 6.6649 0.0014 27 8 1.4263 2.3957 -0.0005 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 4.1528 0.6455 0.0013 32 1 4.5513 3.3008 0.0038 33 1 -0.2397 3.4517 -0.3793 34 1 -0.8605 4.4107 0.9998 35 1 -2.8669 5.5852 0.5652 36 1 -3.4806 5.7055 -1.1014 37 1 -3.1512 4.1087 -0.3873 38 1 -2.2353 7.3269 0.5816 39 1 -1.5936 8.6331 -0.4436 40 1 -2.8466 7.5392 -1.0765 41 1 0.3490 6.4227 -2.7096 42 1 -1.3016 6.9985 -3.0441 43 1 0.0341 8.9615 -1.5140 44 1 1.2478 11.9574 -2.3379 45 1 0.0292 6.9597 1.0055 46 1 1.1140 7.3296 -0.3704 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182972437.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:51 Heat of formation + Delta-G solvation = -33.709681 kcal Electronic energy + Delta-G solvation = -28327.474733 eV Core-core repulsion = 24413.211289 eV Total energy + Delta-G solvation = -3914.263444 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.93138 -40.16027 -38.89171 -38.06382 -34.79482 -33.55117 -33.11425 -31.53133 -30.05630 -29.47504 -27.87335 -26.78437 -25.68691 -25.57966 -23.43161 -22.41477 -22.13406 -21.03950 -19.99360 -18.80853 -18.37277 -17.59211 -17.31137 -16.78530 -16.05512 -15.76367 -15.53875 -15.09713 -14.85546 -14.41457 -14.01622 -13.92114 -13.60521 -13.42045 -13.32579 -13.18053 -12.99851 -12.77395 -12.67278 -12.54640 -11.99064 -11.90888 -11.86879 -11.55807 -11.41562 -11.21788 -10.94596 -10.80076 -10.46986 -10.30993 -10.20155 -10.15247 -10.10034 -9.86703 -9.56267 -8.83424 -8.68509 -8.22367 -6.86257 -5.71359 -2.99319 0.95395 1.96997 2.19267 2.77920 3.11179 3.24809 3.47717 3.53381 3.55511 4.43565 4.56493 4.60859 4.64479 4.65717 4.68940 4.83269 4.93845 4.97648 5.22552 5.32150 5.36843 5.41488 5.47543 5.51323 5.59782 5.63572 5.67073 5.73045 5.85486 5.92248 6.01058 6.09447 6.12735 6.16950 6.22061 6.22434 6.43332 6.43993 6.54455 6.71517 6.80944 6.86267 6.90202 7.59127 7.75851 8.15556 8.47556 9.59045 10.15834 10.50694 11.51688 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.015108 B = 0.003477 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.884785 B = 8051.646056 C = 9056.101087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.264 6.264 3 C 0.203 3.797 4 C -0.238 4.238 5 C -0.086 4.086 6 C -0.087 4.087 7 C 0.621 3.379 8 O -0.513 6.513 9 N -0.612 5.612 10 C 0.104 3.896 11 C -0.098 4.098 12 H 0.081 0.919 13 C -0.141 4.141 14 C -0.075 4.075 15 C -0.134 4.134 16 C 0.169 3.831 17 N -0.729 5.729 18 C -0.237 4.237 19 H 0.069 0.931 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.906 3.094 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.115 3.885 27 O -0.185 6.185 28 H 0.109 0.891 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.162 0.838 32 H 0.168 0.832 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.017 0.983 42 H 0.021 0.979 43 H 0.384 0.616 44 H 0.254 0.746 45 H 0.070 0.930 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.609 -22.955 8.715 25.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.178 6.178 3 C 0.107 3.893 4 C -0.258 4.258 5 C -0.107 4.107 6 C -0.137 4.137 7 C 0.410 3.590 8 O -0.390 6.390 9 N -0.344 5.344 10 C -0.019 4.019 11 C -0.118 4.118 12 H 0.100 0.900 13 C -0.198 4.198 14 C -0.077 4.077 15 C -0.191 4.191 16 C 0.041 3.959 17 N -0.374 5.374 18 C -0.368 4.368 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.737 3.263 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.007 4.007 27 O -0.086 6.086 28 H 0.128 0.872 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.180 0.820 32 H 0.185 0.815 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.035 0.965 42 H 0.038 0.962 43 H 0.219 0.781 44 H 0.064 0.936 45 H 0.088 0.912 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.195 -22.659 8.542 24.766 hybrid contribution 0.143 0.484 -0.652 0.825 sum -5.052 -22.175 7.890 24.073 Atomic orbital electron populations 1.23173 0.76703 1.04914 1.02738 1.86399 1.23078 1.18969 1.89306 1.20856 0.89659 0.78426 1.00367 1.20761 0.92066 0.96853 1.16132 1.21993 0.97878 0.92474 0.98341 1.22015 0.86908 0.87124 1.17692 1.15904 0.81873 0.83826 0.77383 1.90964 1.43156 1.53580 1.51299 1.48735 1.04291 1.09505 1.71909 1.22627 0.84121 0.95372 0.99738 1.22153 0.94674 0.95522 0.99446 0.90011 1.21886 0.95171 1.01077 1.01674 1.21792 0.94718 0.93927 0.97230 1.21868 0.97665 1.00061 0.99521 1.20645 0.95937 0.87905 0.91403 1.42390 1.76810 1.08764 1.09412 1.19242 1.34344 0.95028 0.88202 0.91304 1.24708 1.02253 0.96992 0.96943 1.69656 1.53318 1.10630 1.24533 0.86131 0.78199 0.79194 0.82761 1.20642 1.21949 1.21869 1.22693 0.97245 0.81878 0.98872 1.84077 1.37418 1.14134 1.72951 0.87221 0.91803 0.91722 0.82008 0.81451 0.90092 0.91052 0.92003 0.91658 0.93171 0.93083 0.91175 0.92134 0.96498 0.96160 0.78086 0.93599 0.91196 0.87957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 10.74 101.05 1.09 1.19 16 2 O -0.26 -2.42 10.55 -41.05 -0.43 -2.85 16 3 C 0.20 2.25 7.86 29.96 0.24 2.48 16 4 C -0.24 -2.58 10.89 -39.73 -0.43 -3.01 16 5 C -0.09 -1.09 10.66 -39.10 -0.42 -1.51 16 6 C -0.09 -1.25 7.00 -36.57 -0.26 -1.51 16 7 C 0.62 10.80 7.87 -13.09 -0.10 10.70 16 8 O -0.51 -10.82 17.13 5.13 0.09 -10.73 16 9 N -0.61 -9.64 3.31 -170.79 -0.57 -10.21 16 10 C 0.10 1.24 6.23 -2.41 -0.02 1.23 16 11 C -0.10 -1.20 3.31 -89.21 -0.30 -1.49 16 12 H 0.08 1.03 7.71 -51.93 -0.40 0.63 16 13 C -0.14 -1.33 7.93 37.16 0.29 -1.04 16 14 C -0.08 -1.19 0.74 -152.89 -0.11 -1.30 16 15 C -0.13 -1.96 7.11 37.16 0.26 -1.69 16 16 C 0.17 3.45 4.96 -4.04 -0.02 3.43 16 17 N -0.73 -18.52 4.80 -59.91 -0.29 -18.81 16 18 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 19 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -28.58 13.06 55.49 0.72 -27.85 16 22 Si 0.91 23.01 29.55 -169.99 -5.02 17.99 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 25 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 26 C 0.11 1.94 5.93 -2.19 -0.01 1.93 16 27 O -0.19 -2.26 7.28 -19.22 -0.14 -2.40 16 28 H 0.11 0.34 8.14 -51.92 -0.42 -0.09 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.16 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.17 1.94 8.06 -52.49 -0.42 1.52 16 33 H 0.08 0.90 5.54 -51.93 -0.29 0.61 16 34 H 0.07 0.73 7.86 -51.93 -0.41 0.33 16 35 H 0.06 0.56 6.62 -51.93 -0.34 0.22 16 36 H 0.06 0.64 6.98 -51.93 -0.36 0.28 16 37 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.05 0.61 6.67 -51.93 -0.35 0.27 16 39 H 0.07 1.23 6.74 -51.93 -0.35 0.88 16 40 H 0.06 0.84 6.89 -51.93 -0.36 0.49 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.38 10.13 5.99 -40.82 -0.24 9.88 16 44 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.07 1.06 7.84 -51.93 -0.41 0.65 16 46 H 0.10 2.18 6.96 -51.93 -0.36 1.82 16 LS Contribution 370.63 15.07 5.59 5.59 Total: -1.00 -34.13 370.63 -6.88 -41.01 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.80 Total: 6.27 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -0.03 Total: 2.01 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -0.13 Total: -56.87 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.49 Total: -15.99 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.13 -6.88 -41.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182972437.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.297 kcal (2) G-P(sol) polarization free energy of solvation -34.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds