Wall clock time and date at job start Tue Mar 31 2020 16:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.52476 * 2 1 4 4 C 1.53194 * 109.51251 * 239.92379 * 2 1 3 5 5 N 1.46931 * 108.76321 * 294.69856 * 4 2 1 6 6 C 1.34773 * 120.62852 * 126.36110 * 5 4 2 7 7 O 1.21281 * 120.00379 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00130 * 180.02562 * 6 5 4 9 9 C 1.52992 * 109.47365 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47255 * 179.97438 * 9 8 6 11 11 F 1.39903 * 109.47107 * 60.00339 * 10 9 8 12 12 F 1.39902 * 109.47177 * 180.02562 * 10 9 8 13 13 F 1.39900 * 109.47398 * 300.00406 * 10 9 8 14 14 C 1.46924 * 118.73897 * 306.37969 * 5 4 2 15 15 C 1.53194 * 108.77390 * 53.61086 * 14 5 4 16 16 C 1.53040 * 109.31367 * 305.36176 * 15 14 5 17 17 H 1.08995 * 109.45933 * 301.36091 * 16 15 14 18 18 C 1.53001 * 109.45855 * 181.38794 * 16 15 14 19 19 N 1.46490 * 109.47264 * 64.97245 * 18 16 15 20 20 C 1.36935 * 120.00121 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00139 * 0.02562 * 20 19 18 22 22 C 1.38816 * 120.00401 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99569 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00172 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47055 * 180.02562 * 24 22 20 26 26 H 1.48505 * 109.46653 * 299.99639 * 24 22 20 27 27 H 1.48495 * 109.47483 * 60.00002 * 24 22 20 28 28 H 1.08998 * 109.47104 * 299.91573 * 1 2 3 29 29 H 1.08995 * 109.46976 * 59.91986 * 1 2 3 30 30 H 1.09003 * 109.47162 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.60048 * 174.91037 * 4 2 1 32 32 H 1.09001 * 109.70040 * 54.54802 * 4 2 1 33 33 H 1.09003 * 109.46896 * 300.00254 * 8 6 5 34 34 H 1.09001 * 109.46583 * 59.99730 * 8 6 5 35 35 H 1.09003 * 109.47520 * 300.00116 * 9 8 6 36 36 H 1.09008 * 109.47132 * 59.99739 * 9 8 6 37 37 H 1.08997 * 109.58682 * 293.82790 * 14 5 4 38 38 H 1.09004 * 109.58786 * 173.39456 * 14 5 4 39 39 H 1.09002 * 109.49391 * 185.41031 * 15 14 5 40 40 H 1.08995 * 109.50041 * 65.31952 * 15 14 5 41 41 H 1.09003 * 109.46836 * 304.96952 * 18 16 15 42 42 H 1.08999 * 109.47071 * 184.97991 * 18 16 15 43 43 H 0.97000 * 120.00577 * 0.02562 * 19 18 16 44 44 H 0.97001 * 119.99885 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7236 -1.2495 5 7 1.6516 -2.1380 -1.1696 6 6 0.9741 -2.7214 -2.1781 7 8 0.6811 -2.0784 -3.1638 8 6 0.5806 -4.1729 -2.0810 9 6 -0.1729 -4.5829 -3.3478 10 6 -0.5718 -6.0567 -3.2495 11 9 -1.3970 -6.2431 -2.1352 12 9 -1.2604 -6.4317 -4.4081 13 9 0.5774 -6.8430 -3.1154 14 6 2.0138 -2.9039 0.0307 15 6 1.5027 -2.1556 1.2659 16 6 2.0408 -0.7231 1.2484 17 1 3.1305 -0.7446 1.2353 18 6 1.5607 0.0170 2.4985 19 7 2.1471 -0.6035 3.6888 20 6 1.8591 -0.1072 4.9321 21 1 1.1992 0.7415 5.0352 22 6 2.4152 -0.6948 6.0601 23 7 3.2199 -1.7288 5.9345 24 14 2.0216 -0.0181 7.7562 25 1 2.7359 -0.8156 8.7853 26 1 2.4587 1.3988 7.8374 27 1 0.5581 -0.0992 7.9942 28 1 -0.3633 0.5125 0.8907 29 1 -0.3633 0.5151 -0.8892 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1279 -0.6463 -1.2978 32 1 1.6034 -0.2734 -2.1402 33 1 1.4759 -4.7858 -1.9758 34 1 -0.0627 -4.3176 -1.2131 35 1 -1.0682 -3.9700 -3.4525 36 1 0.4701 -4.4381 -4.2160 37 1 3.0977 -3.0043 0.0869 38 1 1.5550 -3.8917 -0.0139 39 1 1.8476 -2.6629 2.1670 40 1 0.4130 -2.1352 1.2539 41 1 0.4737 -0.0380 2.5582 42 1 1.8690 1.0610 2.4435 43 1 2.7402 -1.3655 3.5964 44 1 3.4240 -2.0804 5.0538 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184135900.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:15 Heat of formation + Delta-G solvation = -196.376307 kcal Electronic energy + Delta-G solvation = -28177.151130 eV Core-core repulsion = 23713.977191 eV Total energy + Delta-G solvation = -4463.173939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.43450 -47.93206 -47.90806 -40.65678 -38.39123 -35.23200 -34.29537 -33.52532 -31.88290 -30.28527 -28.18905 -26.98337 -26.04693 -23.60234 -23.19703 -22.92687 -21.61209 -20.03709 -18.90156 -18.84755 -18.33091 -18.06514 -17.27676 -16.72332 -16.20192 -15.92190 -15.15609 -14.97773 -14.80736 -14.71802 -14.39796 -14.32187 -14.13812 -14.06774 -14.03895 -13.81267 -13.65554 -13.39465 -13.02001 -13.00874 -12.68725 -12.54097 -12.29127 -12.11038 -11.85620 -11.68928 -11.46024 -11.07229 -10.76022 -10.74169 -10.46624 -10.35882 -10.23283 -9.97680 -9.94689 -9.19872 -8.89451 -8.75182 -7.01945 -6.12965 -3.12290 2.32852 2.35787 2.78446 3.45710 3.50088 3.53325 3.62434 3.70821 3.70977 4.23486 4.42897 4.50605 4.62666 4.68260 4.82600 4.88926 4.93556 4.99370 5.12497 5.18562 5.32843 5.33366 5.44396 5.57257 5.61730 5.67007 5.71740 5.74074 5.87929 5.91545 6.07754 6.15049 6.25418 6.30444 6.33597 6.50866 6.68338 6.81182 7.18270 7.78753 7.89456 8.73389 9.20904 10.07101 10.22081 11.35649 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.017867 B = 0.002663 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.791529 B =10513.250374 C =11456.976611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.082 0.918 4 C 0.117 3.883 5 N -0.602 5.602 6 C 0.521 3.479 7 O -0.547 6.547 8 C -0.149 4.149 9 C -0.149 4.149 10 C 0.452 3.548 11 F -0.183 7.183 12 F -0.184 7.184 13 F -0.184 7.184 14 C 0.103 3.897 15 C -0.128 4.128 16 C -0.090 4.090 17 H 0.070 0.930 18 C 0.164 3.836 19 N -0.743 5.743 20 C -0.330 4.330 21 H 0.063 0.937 22 C -0.046 4.046 23 N -0.945 5.945 24 Si 1.079 2.921 25 H -0.285 1.285 26 H -0.296 1.296 27 H -0.295 1.295 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.023 0.977 42 H 0.018 0.982 43 H 0.366 0.634 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.318 -6.094 -20.302 21.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 H 0.101 0.899 4 C -0.005 4.005 5 N -0.335 5.335 6 C 0.309 3.691 7 O -0.425 6.425 8 C -0.188 4.188 9 C -0.188 4.188 10 C 0.398 3.602 11 F -0.164 7.164 12 F -0.165 7.165 13 F -0.165 7.165 14 C -0.020 4.020 15 C -0.166 4.166 16 C -0.109 4.109 17 H 0.089 0.911 18 C 0.037 3.963 19 N -0.389 5.389 20 C -0.461 4.461 21 H 0.081 0.919 22 C -0.243 4.243 23 N -0.590 5.590 24 Si 0.910 3.090 25 H -0.210 1.210 26 H -0.223 1.223 27 H -0.223 1.223 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.040 0.960 42 H 0.036 0.964 43 H 0.199 0.801 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.344 -5.777 -19.147 20.701 hybrid contribution -0.154 -0.260 -1.492 1.522 sum -5.499 -6.037 -20.639 22.195 Atomic orbital electron populations 1.21856 0.94814 1.01911 1.01594 1.21467 0.96726 0.99536 0.94050 0.89944 1.21708 0.99500 0.80036 0.99294 1.48081 1.55462 1.11834 1.18082 1.20181 0.77563 0.88698 0.82644 1.90702 1.55265 1.65374 1.31146 1.21675 1.02933 0.95335 0.98897 1.22604 1.05395 0.89026 1.01774 1.20596 0.74807 0.91221 0.73561 1.93204 1.73311 1.96341 1.53552 1.93196 1.80387 1.93077 1.49833 1.93192 1.50044 1.77702 1.95597 1.21934 1.00800 0.94932 0.84326 1.21972 1.01571 0.96054 0.97015 1.21328 1.00179 0.94665 0.94727 0.91136 1.20643 0.95927 0.94605 0.85162 1.42383 1.57269 1.37462 1.01792 1.20027 1.27145 1.13720 0.85236 0.91888 1.25758 0.98188 0.97972 1.02379 1.70901 1.37896 1.25227 1.25009 0.83249 0.75403 0.74925 0.75421 1.21021 1.22301 1.22284 0.91924 0.93206 0.92679 0.91442 0.89013 0.87448 0.87333 0.86415 0.86471 0.90840 0.89820 0.89714 0.91150 0.95973 0.96428 0.80068 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.38 37.16 0.31 -1.47 16 2 C -0.10 -1.19 2.72 -90.50 -0.25 -1.43 16 3 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.12 1.30 5.83 -3.71 -0.02 1.27 16 5 N -0.60 -6.43 2.41 -172.76 -0.42 -6.84 16 6 C 0.52 5.64 7.70 -10.99 -0.08 5.55 16 7 O -0.55 -7.49 15.39 5.56 0.09 -7.41 16 8 C -0.15 -1.15 3.80 -27.89 -0.11 -1.25 16 9 C -0.15 -1.10 4.55 -26.74 -0.12 -1.22 16 10 C 0.45 3.68 3.16 37.16 0.12 3.80 16 11 F -0.18 -1.67 16.80 2.25 0.04 -1.63 16 12 F -0.18 -1.65 17.32 2.25 0.04 -1.61 16 13 F -0.18 -1.61 16.80 2.25 0.04 -1.57 16 14 C 0.10 1.03 6.34 -3.71 -0.02 1.01 16 15 C -0.13 -1.68 4.90 -26.61 -0.13 -1.82 16 16 C -0.09 -1.30 1.96 -90.57 -0.18 -1.48 16 17 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 18 C 0.16 3.15 5.19 -4.05 -0.02 3.13 16 19 N -0.74 -18.03 5.31 -59.91 -0.32 -18.35 16 20 C -0.33 -9.20 9.99 -15.06 -0.15 -9.35 16 21 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 22 C -0.05 -1.31 5.50 -17.43 -0.10 -1.40 16 23 N -0.94 -28.66 13.70 55.49 0.76 -27.90 16 24 Si 1.08 25.66 29.92 -169.99 -5.09 20.57 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.30 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.30 -6.72 7.11 56.52 0.40 -6.32 16 28 H 0.06 0.82 6.58 -51.93 -0.34 0.48 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.69 5.97 -51.93 -0.31 0.38 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.09 1.08 7.00 -51.93 -0.36 0.72 16 33 H 0.11 0.68 7.60 -51.93 -0.39 0.29 16 34 H 0.11 0.76 7.35 -51.93 -0.38 0.38 16 35 H 0.12 0.86 8.10 -51.93 -0.42 0.44 16 36 H 0.12 0.82 8.10 -51.92 -0.42 0.40 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.67 5.93 -51.93 -0.31 0.36 16 39 H 0.08 1.29 7.15 -51.93 -0.37 0.92 16 40 H 0.07 0.95 6.33 -51.93 -0.33 0.63 16 41 H 0.02 0.44 6.74 -51.93 -0.35 0.09 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.37 8.94 5.68 -40.82 -0.23 8.70 16 44 H 0.25 7.50 6.77 -40.82 -0.28 7.23 16 LS Contribution 354.99 15.07 5.35 5.35 Total: -1.00 -32.51 354.99 -6.50 -39.01 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.24 Total: 5.05 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -0.75 Total: -4.66 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 0.03 Total: -53.09 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: 0.09 Total: -7.41 kcal Atomic # 9 Polarization: -4.94 SS G_CDS: 0.11 Total: -4.82 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -5.09 Total: 20.57 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.51 -6.50 -39.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184135900.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.364 kcal (2) G-P(sol) polarization free energy of solvation -32.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds