Wall clock time and date at job start Tue Mar 31 2020 16:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.52476 * 2 1 4 4 C 1.53194 * 109.51251 * 239.92379 * 2 1 3 5 5 N 1.46931 * 108.76321 * 294.69856 * 4 2 1 6 6 C 1.34773 * 120.62852 * 126.36110 * 5 4 2 7 7 O 1.21281 * 120.00379 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00130 * 180.02562 * 6 5 4 9 9 C 1.52992 * 109.47365 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47255 * 179.97438 * 9 8 6 11 11 F 1.39903 * 109.47107 * 60.00339 * 10 9 8 12 12 F 1.39902 * 109.47177 * 180.02562 * 10 9 8 13 13 F 1.39900 * 109.47398 * 300.00406 * 10 9 8 14 14 C 1.46924 * 118.73897 * 306.37969 * 5 4 2 15 15 C 1.53194 * 108.77390 * 53.61086 * 14 5 4 16 16 C 1.53040 * 109.31367 * 305.36176 * 15 14 5 17 17 H 1.08995 * 109.45933 * 301.36091 * 16 15 14 18 18 C 1.53001 * 109.45855 * 181.38794 * 16 15 14 19 19 N 1.46490 * 109.47264 * 64.97245 * 18 16 15 20 20 C 1.36935 * 120.00121 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00139 * 0.02562 * 20 19 18 22 22 C 1.38816 * 120.00401 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99569 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00172 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47055 * 180.02562 * 24 22 20 26 26 H 1.48505 * 109.46653 * 299.99639 * 24 22 20 27 27 H 1.48495 * 109.47483 * 60.00002 * 24 22 20 28 28 H 1.08998 * 109.47104 * 299.91573 * 1 2 3 29 29 H 1.08995 * 109.46976 * 59.91986 * 1 2 3 30 30 H 1.09003 * 109.47162 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.60048 * 174.91037 * 4 2 1 32 32 H 1.09001 * 109.70040 * 54.54802 * 4 2 1 33 33 H 1.09003 * 109.46896 * 300.00254 * 8 6 5 34 34 H 1.09001 * 109.46583 * 59.99730 * 8 6 5 35 35 H 1.09003 * 109.47520 * 300.00116 * 9 8 6 36 36 H 1.09008 * 109.47132 * 59.99739 * 9 8 6 37 37 H 1.08997 * 109.58682 * 293.82790 * 14 5 4 38 38 H 1.09004 * 109.58786 * 173.39456 * 14 5 4 39 39 H 1.09002 * 109.49391 * 185.41031 * 15 14 5 40 40 H 1.08995 * 109.50041 * 65.31952 * 15 14 5 41 41 H 1.09003 * 109.46836 * 304.96952 * 18 16 15 42 42 H 1.08999 * 109.47071 * 184.97991 * 18 16 15 43 43 H 0.97000 * 120.00577 * 0.02562 * 19 18 16 44 44 H 0.97001 * 119.99885 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7236 -1.2495 5 7 1.6516 -2.1380 -1.1696 6 6 0.9741 -2.7214 -2.1781 7 8 0.6811 -2.0784 -3.1638 8 6 0.5806 -4.1729 -2.0810 9 6 -0.1729 -4.5829 -3.3478 10 6 -0.5718 -6.0567 -3.2495 11 9 -1.3970 -6.2431 -2.1352 12 9 -1.2604 -6.4317 -4.4081 13 9 0.5774 -6.8430 -3.1154 14 6 2.0138 -2.9039 0.0307 15 6 1.5027 -2.1556 1.2659 16 6 2.0408 -0.7231 1.2484 17 1 3.1305 -0.7446 1.2353 18 6 1.5607 0.0170 2.4985 19 7 2.1471 -0.6035 3.6888 20 6 1.8591 -0.1072 4.9321 21 1 1.1992 0.7415 5.0352 22 6 2.4152 -0.6948 6.0601 23 7 3.2199 -1.7288 5.9345 24 14 2.0216 -0.0181 7.7562 25 1 2.7359 -0.8156 8.7853 26 1 2.4587 1.3988 7.8374 27 1 0.5581 -0.0992 7.9942 28 1 -0.3633 0.5125 0.8907 29 1 -0.3633 0.5151 -0.8892 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1279 -0.6463 -1.2978 32 1 1.6034 -0.2734 -2.1402 33 1 1.4759 -4.7858 -1.9758 34 1 -0.0627 -4.3176 -1.2131 35 1 -1.0682 -3.9700 -3.4525 36 1 0.4701 -4.4381 -4.2160 37 1 3.0977 -3.0043 0.0869 38 1 1.5550 -3.8917 -0.0139 39 1 1.8476 -2.6629 2.1670 40 1 0.4130 -2.1352 1.2539 41 1 0.4737 -0.0380 2.5582 42 1 1.8690 1.0610 2.4435 43 1 2.7402 -1.3655 3.5964 44 1 3.4240 -2.0804 5.0538 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184135900.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:14 Heat of formation + Delta-G solvation = -215.181798 kcal Electronic energy + Delta-G solvation = -28177.966597 eV Core-core repulsion = 23713.977191 eV Total energy + Delta-G solvation = -4463.989406 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -51.10057 -48.60745 -48.57768 -41.57478 -39.44821 -36.84371 -35.16781 -34.68129 -33.16423 -31.86939 -28.99486 -28.35133 -27.02620 -25.40621 -24.25186 -23.79214 -22.88476 -20.93972 -19.75755 -19.55394 -19.45428 -19.04866 -18.72894 -17.58468 -16.99550 -16.79126 -16.71324 -16.09693 -15.83894 -15.60635 -15.48757 -15.37484 -15.17670 -15.00989 -14.83716 -14.74113 -14.70474 -14.47973 -14.20812 -14.17218 -13.70722 -13.58854 -13.28796 -12.84055 -12.73839 -12.66974 -12.63198 -12.44984 -12.39224 -12.11762 -11.90636 -11.77749 -11.45301 -11.44513 -11.13992 -10.91417 -10.84369 -9.67469 -9.07879 -8.38641 -5.31896 1.52497 1.58962 1.66145 1.68161 1.84867 2.01121 2.71427 2.81222 2.98278 3.08497 3.40142 3.48533 3.63542 3.67594 3.76055 3.86474 3.94836 4.01300 4.13036 4.21943 4.31334 4.39073 4.44414 4.59026 4.61388 4.68704 4.72232 4.76501 4.80064 4.81438 4.91654 5.01752 5.09324 5.13399 5.18425 5.26385 5.45690 5.56594 5.59500 6.34053 6.52304 7.05786 7.11990 8.02812 8.13134 9.13782 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.017867 B = 0.002663 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.791529 B =10513.250374 C =11456.976611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 H 0.087 0.913 4 C 0.120 3.880 5 N -0.602 5.602 6 C 0.521 3.479 7 O -0.577 6.577 8 C -0.146 4.146 9 C -0.143 4.143 10 C 0.457 3.543 11 F -0.188 7.188 12 F -0.189 7.189 13 F -0.186 7.186 14 C 0.110 3.890 15 C -0.123 4.123 16 C -0.079 4.079 17 H 0.067 0.933 18 C 0.164 3.836 19 N -0.753 5.753 20 C -0.336 4.336 21 H 0.061 0.939 22 C -0.101 4.101 23 N -0.973 5.973 24 Si 1.125 2.875 25 H -0.292 1.292 26 H -0.280 1.280 27 H -0.279 1.279 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.127 0.873 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.083 0.917 38 H 0.110 0.890 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.018 0.982 42 H 0.010 0.990 43 H 0.363 0.637 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.558 -6.304 -21.058 22.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.110 4.110 3 H 0.106 0.894 4 C -0.002 4.002 5 N -0.334 5.334 6 C 0.311 3.689 7 O -0.457 6.457 8 C -0.185 4.185 9 C -0.182 4.182 10 C 0.403 3.597 11 F -0.170 7.170 12 F -0.171 7.171 13 F -0.168 7.168 14 C -0.012 4.012 15 C -0.162 4.162 16 C -0.098 4.098 17 H 0.085 0.915 18 C 0.038 3.962 19 N -0.398 5.398 20 C -0.467 4.467 21 H 0.079 0.921 22 C -0.293 4.293 23 N -0.621 5.621 24 Si 0.950 3.050 25 H -0.218 1.218 26 H -0.206 1.206 27 H -0.205 1.205 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.145 0.855 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.102 0.898 38 H 0.128 0.872 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.036 0.964 42 H 0.028 0.972 43 H 0.196 0.804 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.602 -5.974 -19.939 21.556 hybrid contribution -0.115 -0.155 -1.304 1.318 sum -5.716 -6.129 -21.243 22.837 Atomic orbital electron populations 1.21800 0.94874 1.01656 1.01365 1.21400 0.96538 0.99734 0.93346 0.89440 1.21637 1.00112 0.80311 0.98148 1.48123 1.55370 1.11696 1.18250 1.20630 0.76694 0.89663 0.81959 1.90693 1.56348 1.66377 1.32302 1.21714 1.04006 0.93346 0.99458 1.22556 1.05493 0.88233 1.01871 1.20654 0.74507 0.91459 0.73125 1.93194 1.73537 1.96403 1.53855 1.93186 1.80544 1.93167 1.50176 1.93188 1.50136 1.77888 1.95584 1.21927 1.01541 0.95390 0.82376 1.21870 1.01208 0.95277 0.97808 1.21203 0.99909 0.95300 0.93428 0.91452 1.20774 0.95344 0.94489 0.85621 1.42557 1.57417 1.37544 1.02321 1.20360 1.26275 1.13263 0.86828 0.92106 1.27120 0.98123 0.97988 1.06063 1.70996 1.39741 1.26748 1.24664 0.82654 0.76020 0.74945 0.71365 1.21770 1.20598 1.20512 0.93209 0.92311 0.92938 0.90313 0.89354 0.85539 0.86239 0.86395 0.86010 0.89835 0.87179 0.92024 0.91608 0.96412 0.97187 0.80428 0.94379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.38 71.98 0.60 -2.69 16 2 C -0.09 -2.08 2.72 -10.71 -0.03 -2.11 16 3 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 4 C 0.12 2.44 5.83 86.36 0.50 2.95 16 5 N -0.60 -11.51 2.41 -818.89 -1.97 -13.48 16 6 C 0.52 10.10 7.70 87.66 0.67 10.77 16 7 O -0.58 -14.84 15.39 -3.03 -0.05 -14.88 16 8 C -0.15 -1.86 3.80 29.85 0.11 -1.75 16 9 C -0.14 -1.81 4.55 30.59 0.14 -1.67 16 10 C 0.46 6.62 3.16 71.98 0.23 6.85 16 11 F -0.19 -3.12 16.80 44.97 0.76 -2.36 16 12 F -0.19 -3.16 17.32 44.97 0.78 -2.38 16 13 F -0.19 -2.90 16.80 44.97 0.76 -2.14 16 14 C 0.11 1.95 6.34 86.36 0.55 2.49 16 15 C -0.12 -3.14 4.90 30.67 0.15 -2.99 16 16 C -0.08 -2.24 1.96 -10.76 -0.02 -2.26 16 17 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 18 C 0.16 6.31 5.19 86.38 0.45 6.76 16 19 N -0.75 -36.97 5.31 -343.47 -1.83 -38.79 16 20 C -0.34 -18.79 9.99 84.03 0.84 -17.95 16 21 H 0.06 3.36 7.83 -2.91 -0.02 3.34 16 22 C -0.10 -5.82 5.50 84.86 0.47 -5.35 16 23 N -0.97 -59.66 13.70 21.65 0.30 -59.36 16 24 Si 1.13 51.43 29.92 68.60 2.05 53.48 16 25 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 26 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 27 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 28 H 0.05 1.29 6.58 -2.39 -0.02 1.27 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.05 1.26 5.97 -2.39 -0.01 1.24 16 31 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.09 1.92 7.00 -2.39 -0.02 1.91 16 33 H 0.13 1.17 7.60 -2.39 -0.02 1.15 16 34 H 0.12 1.32 7.35 -2.39 -0.02 1.30 16 35 H 0.12 1.52 8.10 -2.39 -0.02 1.50 16 36 H 0.12 1.46 8.10 -2.38 -0.02 1.44 16 37 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.11 1.40 5.93 -2.38 -0.01 1.39 16 39 H 0.06 1.88 7.15 -2.39 -0.02 1.86 16 40 H 0.07 1.73 6.33 -2.39 -0.02 1.71 16 41 H 0.02 0.71 6.74 -2.39 -0.02 0.70 16 42 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.36 18.07 5.68 -92.71 -0.53 17.55 16 44 H 0.25 14.83 6.77 -92.71 -0.63 14.20 16 Total: -1.00 -69.41 354.99 6.10 -63.31 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.64 Total: 23.55 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 4.66 Total: -6.94 kcal Atomic # 7 Polarization: -108.13 SS G_CDS: -3.50 Total: -111.63 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.05 Total: -14.88 kcal Atomic # 9 Polarization: -9.18 SS G_CDS: 2.29 Total: -6.89 kcal Atomic # 14 Polarization: 51.43 SS G_CDS: 2.05 Total: 53.48 kcal Total: -69.41 6.10 -63.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184135900.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.876 kcal (2) G-P(sol) polarization free energy of solvation -69.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds