Wall clock time and date at job start Tue Mar 31 2020 16:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08990 * 109.52977 * 2 1 4 4 C 1.53194 * 109.49625 * 239.91503 * 2 1 3 5 5 N 1.46918 * 108.78089 * 185.41610 * 4 2 1 6 6 C 1.34779 * 120.63268 * 233.61461 * 5 4 2 7 7 O 1.21280 * 119.99784 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99982 * 179.97438 * 6 5 4 9 9 C 1.52997 * 109.47043 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 8 6 11 11 F 1.39897 * 109.47225 * 59.99770 * 10 9 8 12 12 F 1.39900 * 109.47094 * 179.97438 * 10 9 8 13 13 F 1.39901 * 109.46962 * 299.99540 * 10 9 8 14 14 C 1.46929 * 118.73922 * 53.60697 * 5 4 2 15 15 C 1.53196 * 108.77486 * 306.39780 * 14 5 4 16 16 C 1.53037 * 109.31315 * 54.63188 * 15 14 5 17 17 H 1.09003 * 109.46385 * 58.64280 * 16 15 14 18 18 C 1.52999 * 109.46122 * 178.61348 * 16 15 14 19 19 N 1.46507 * 109.47222 * 295.00019 * 18 16 15 20 20 C 1.36934 * 120.00064 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00144 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99938 * 180.02562 * 20 19 18 23 23 N 1.31618 * 120.00006 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00087 * 180.02562 * 22 20 19 25 25 H 1.48510 * 109.47164 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47523 * 119.99593 * 24 22 20 27 27 H 1.48500 * 109.47297 * 239.99841 * 24 22 20 28 28 H 1.08999 * 109.46654 * 299.92265 * 1 2 3 29 29 H 1.09000 * 109.47055 * 59.91775 * 1 2 3 30 30 H 1.09001 * 109.47391 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.58991 * 305.21097 * 4 2 1 32 32 H 1.09000 * 109.58500 * 65.48428 * 4 2 1 33 33 H 1.09003 * 109.47153 * 300.00025 * 8 6 5 34 34 H 1.08998 * 109.47026 * 59.99715 * 8 6 5 35 35 H 1.09000 * 109.47095 * 299.99611 * 9 8 6 36 36 H 1.08998 * 109.47318 * 60.00047 * 9 8 6 37 37 H 1.08998 * 109.59209 * 186.60595 * 14 5 4 38 38 H 1.09003 * 109.58217 * 66.17876 * 14 5 4 39 39 H 1.08998 * 109.49640 * 174.58442 * 15 14 5 40 40 H 1.08994 * 109.49723 * 294.64754 * 15 14 5 41 41 H 1.09001 * 109.47059 * 54.99840 * 18 16 15 42 42 H 1.09000 * 109.47595 * 175.00253 * 18 16 15 43 43 H 0.97001 * 119.99705 * 0.02562 * 19 18 16 44 44 H 0.97002 * 120.00109 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0413 -0.7239 -1.2496 5 7 3.5045 -0.8294 -1.1697 6 6 4.2810 -0.3862 -2.1782 7 8 3.7730 0.1048 -3.1640 8 6 5.7805 -0.5009 -2.0810 9 6 6.4189 0.0707 -3.3485 10 6 7.9413 -0.0464 -3.2501 11 9 8.2978 -1.3924 -3.1146 12 9 8.5251 0.4758 -4.4093 13 9 8.3930 0.6701 -2.1366 14 6 4.1052 -1.4269 0.0307 15 6 3.5708 -0.6952 1.2660 16 6 2.0408 -0.7232 1.2483 17 1 1.6966 -1.7573 1.2351 18 6 1.5037 -0.0233 2.4984 19 7 1.8917 -0.7841 3.6888 20 6 1.5209 -0.3462 4.9321 21 1 0.9428 0.5602 5.0353 22 6 1.8890 -1.0668 6.0600 23 7 2.5940 -2.1711 5.9344 24 14 1.3826 -0.4699 7.7561 25 1 0.6011 0.7862 7.6259 26 1 0.5489 -1.5059 8.4170 27 1 2.5957 -0.2150 8.5738 28 1 -0.3632 0.5126 0.8907 29 1 -0.3633 0.5151 -0.8892 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6051 -1.7217 -1.2981 32 1 1.7615 -0.1594 -2.1390 33 1 6.1321 0.0571 -1.2132 34 1 6.0586 -1.5496 -1.9756 35 1 6.0674 -0.4878 -4.2160 36 1 6.1409 1.1193 -3.4543 37 1 5.1895 -1.3249 -0.0138 38 1 3.8373 -2.4820 0.0867 39 1 3.9334 -1.1898 2.1670 40 1 3.9164 0.3385 1.2543 41 1 1.9195 0.9825 2.5585 42 1 0.4167 0.0356 2.4432 43 1 2.4119 -1.5975 3.5962 44 1 2.8515 -2.6745 6.7226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184135901.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:18 Heat of formation + Delta-G solvation = -199.850038 kcal Electronic energy + Delta-G solvation = -27892.171851 eV Core-core repulsion = 23428.847281 eV Total energy + Delta-G solvation = -4463.324571 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.40798 -47.90633 -47.88076 -40.49293 -38.24368 -35.08390 -34.25991 -33.49241 -32.00939 -30.36558 -28.23419 -26.95267 -25.97905 -23.83078 -22.88232 -22.51884 -21.34979 -19.99874 -19.29497 -18.87019 -18.49991 -18.03252 -17.14799 -16.55880 -16.14290 -16.04722 -14.97261 -14.83564 -14.78024 -14.53629 -14.32149 -14.13742 -14.08071 -14.00439 -13.97503 -13.91731 -13.58031 -13.16323 -13.11998 -12.67192 -12.55580 -12.49678 -12.09672 -11.96883 -11.82389 -11.79167 -11.62914 -11.03243 -10.93076 -10.85859 -10.43104 -10.36897 -10.22687 -10.01991 -9.89907 -9.66842 -8.89655 -8.70586 -6.93442 -5.79885 -3.07749 2.35995 2.39195 2.82410 3.41036 3.47171 3.48752 3.49010 3.65631 3.73890 4.27732 4.47216 4.54086 4.56140 4.75104 4.88330 4.92580 4.97796 5.05655 5.21974 5.25431 5.37029 5.40375 5.46382 5.54671 5.64422 5.73830 5.80943 5.86323 5.92973 6.02694 6.17405 6.23928 6.28088 6.38826 6.45316 6.58148 6.79545 6.89188 7.22895 7.68230 7.93087 8.39587 9.50919 10.08888 10.43391 11.43151 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.016173 B = 0.002660 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.896621 B =10524.319304 C =11778.693386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.073 0.927 4 C 0.117 3.883 5 N -0.605 5.605 6 C 0.521 3.479 7 O -0.548 6.548 8 C -0.148 4.148 9 C -0.150 4.150 10 C 0.452 3.548 11 F -0.184 7.184 12 F -0.184 7.184 13 F -0.183 7.183 14 C 0.102 3.898 15 C -0.127 4.127 16 C -0.089 4.089 17 H 0.072 0.928 18 C 0.156 3.844 19 N -0.732 5.732 20 C -0.237 4.237 21 H 0.070 0.930 22 C -0.015 4.015 23 N -0.934 5.934 24 Si 0.906 3.094 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.016 0.984 42 H 0.024 0.976 43 H 0.383 0.617 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.120 2.180 -20.202 21.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 H 0.091 0.909 4 C -0.005 4.005 5 N -0.337 5.337 6 C 0.309 3.691 7 O -0.427 6.427 8 C -0.188 4.188 9 C -0.188 4.188 10 C 0.398 3.602 11 F -0.165 7.165 12 F -0.165 7.165 13 F -0.164 7.164 14 C -0.020 4.020 15 C -0.165 4.165 16 C -0.108 4.108 17 H 0.091 0.909 18 C 0.029 3.971 19 N -0.376 5.376 20 C -0.368 4.368 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.583 5.583 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.083 0.917 41 H 0.034 0.966 42 H 0.042 0.958 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.809 2.533 -20.582 21.826 hybrid contribution 0.244 -0.068 1.185 1.212 sum 7.053 2.465 -19.397 20.786 Atomic orbital electron populations 1.21832 0.94331 1.02221 1.02098 1.21460 0.96181 0.99913 0.94133 0.90898 1.21724 0.78483 1.01009 0.99269 1.48139 1.07235 1.60147 1.18178 1.20200 0.88629 0.77658 0.82631 1.90699 1.75507 1.45272 1.31193 1.21673 0.93554 1.04697 0.98880 1.22606 0.86909 1.07502 1.01790 1.20599 0.92437 0.73600 0.73550 1.93191 1.93666 1.34092 1.95583 1.93195 1.86767 1.86757 1.49804 1.93204 1.91232 1.78357 1.53609 1.21960 0.98042 0.97755 0.84269 1.21942 0.96156 1.01169 0.97213 1.21343 0.94664 1.00231 0.94573 0.90925 1.20756 0.96704 0.94043 0.85617 1.42385 1.65457 1.28930 1.00869 1.19267 1.27604 1.06142 0.83821 0.91243 1.24720 1.00958 0.97540 0.97814 1.69656 1.42905 1.17278 1.28451 0.86136 0.77669 0.77762 0.84744 1.20602 1.21887 1.21891 0.91273 0.92985 0.92481 0.91400 0.89171 0.87262 0.87430 0.86486 0.86422 0.89842 0.90770 0.89111 0.91691 0.96583 0.95783 0.78328 0.93593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.82 37.16 0.33 -1.36 16 2 C -0.10 -1.19 2.42 -90.50 -0.22 -1.41 16 3 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 4 C 0.12 1.34 5.71 -3.71 -0.02 1.32 16 5 N -0.60 -6.68 2.97 -172.76 -0.51 -7.19 16 6 C 0.52 5.79 7.70 -10.98 -0.08 5.71 16 7 O -0.55 -7.69 15.40 5.56 0.09 -7.61 16 8 C -0.15 -1.17 3.80 -27.88 -0.11 -1.27 16 9 C -0.15 -1.11 4.55 -26.73 -0.12 -1.24 16 10 C 0.45 3.72 3.16 37.16 0.12 3.83 16 11 F -0.18 -1.63 16.80 2.25 0.04 -1.59 16 12 F -0.18 -1.67 17.32 2.25 0.04 -1.63 16 13 F -0.18 -1.68 16.80 2.25 0.04 -1.64 16 14 C 0.10 1.05 6.34 -3.71 -0.02 1.03 16 15 C -0.13 -1.70 5.25 -26.61 -0.14 -1.84 16 16 C -0.09 -1.30 1.73 -90.58 -0.16 -1.45 16 17 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 18 C 0.16 2.95 5.41 -4.04 -0.02 2.93 16 19 N -0.73 -17.65 5.32 -59.90 -0.32 -17.97 16 20 C -0.24 -6.48 9.99 -15.06 -0.15 -6.63 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 23 N -0.93 -27.49 13.06 55.49 0.72 -26.77 16 24 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 H 0.07 0.87 6.29 -51.93 -0.33 0.54 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 32 H 0.09 1.09 7.01 -51.93 -0.36 0.72 16 33 H 0.11 0.78 7.35 -51.93 -0.38 0.40 16 34 H 0.11 0.70 7.60 -51.93 -0.39 0.30 16 35 H 0.12 0.83 8.10 -51.93 -0.42 0.41 16 36 H 0.12 0.87 8.10 -51.93 -0.42 0.45 16 37 H 0.08 0.68 5.93 -51.93 -0.31 0.38 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 1.42 7.15 -51.93 -0.37 1.04 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.02 0.47 6.14 -51.93 -0.32 0.15 16 43 H 0.38 9.58 6.85 -40.82 -0.28 9.30 16 44 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 360.71 15.07 5.44 5.44 Total: -1.00 -31.28 360.71 -6.70 -37.99 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -6.51 Total: 4.80 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -0.70 Total: -0.89 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -0.11 Total: -51.93 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: 0.09 Total: -7.61 kcal Atomic # 9 Polarization: -4.98 SS G_CDS: 0.11 Total: -4.86 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.28 -6.70 -37.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184135901.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.861 kcal (2) G-P(sol) polarization free energy of solvation -31.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds