Wall clock time and date at job start Tue Mar 31 2020 16:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08990 * 109.52977 * 2 1 4 4 C 1.53194 * 109.49625 * 239.91503 * 2 1 3 5 5 N 1.46918 * 108.78089 * 185.41610 * 4 2 1 6 6 C 1.34779 * 120.63268 * 233.61461 * 5 4 2 7 7 O 1.21280 * 119.99784 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99982 * 179.97438 * 6 5 4 9 9 C 1.52997 * 109.47043 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 8 6 11 11 F 1.39897 * 109.47225 * 59.99770 * 10 9 8 12 12 F 1.39900 * 109.47094 * 179.97438 * 10 9 8 13 13 F 1.39901 * 109.46962 * 299.99540 * 10 9 8 14 14 C 1.46929 * 118.73922 * 53.60697 * 5 4 2 15 15 C 1.53196 * 108.77486 * 306.39780 * 14 5 4 16 16 C 1.53037 * 109.31315 * 54.63188 * 15 14 5 17 17 H 1.09003 * 109.46385 * 58.64280 * 16 15 14 18 18 C 1.52999 * 109.46122 * 178.61348 * 16 15 14 19 19 N 1.46507 * 109.47222 * 295.00019 * 18 16 15 20 20 C 1.36934 * 120.00064 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00144 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99938 * 180.02562 * 20 19 18 23 23 N 1.31618 * 120.00006 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00087 * 180.02562 * 22 20 19 25 25 H 1.48510 * 109.47164 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47523 * 119.99593 * 24 22 20 27 27 H 1.48500 * 109.47297 * 239.99841 * 24 22 20 28 28 H 1.08999 * 109.46654 * 299.92265 * 1 2 3 29 29 H 1.09000 * 109.47055 * 59.91775 * 1 2 3 30 30 H 1.09001 * 109.47391 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.58991 * 305.21097 * 4 2 1 32 32 H 1.09000 * 109.58500 * 65.48428 * 4 2 1 33 33 H 1.09003 * 109.47153 * 300.00025 * 8 6 5 34 34 H 1.08998 * 109.47026 * 59.99715 * 8 6 5 35 35 H 1.09000 * 109.47095 * 299.99611 * 9 8 6 36 36 H 1.08998 * 109.47318 * 60.00047 * 9 8 6 37 37 H 1.08998 * 109.59209 * 186.60595 * 14 5 4 38 38 H 1.09003 * 109.58217 * 66.17876 * 14 5 4 39 39 H 1.08998 * 109.49640 * 174.58442 * 15 14 5 40 40 H 1.08994 * 109.49723 * 294.64754 * 15 14 5 41 41 H 1.09001 * 109.47059 * 54.99840 * 18 16 15 42 42 H 1.09000 * 109.47595 * 175.00253 * 18 16 15 43 43 H 0.97001 * 119.99705 * 0.02562 * 19 18 16 44 44 H 0.97002 * 120.00109 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0413 -0.7239 -1.2496 5 7 3.5045 -0.8294 -1.1697 6 6 4.2810 -0.3862 -2.1782 7 8 3.7730 0.1048 -3.1640 8 6 5.7805 -0.5009 -2.0810 9 6 6.4189 0.0707 -3.3485 10 6 7.9413 -0.0464 -3.2501 11 9 8.2978 -1.3924 -3.1146 12 9 8.5251 0.4758 -4.4093 13 9 8.3930 0.6701 -2.1366 14 6 4.1052 -1.4269 0.0307 15 6 3.5708 -0.6952 1.2660 16 6 2.0408 -0.7232 1.2483 17 1 1.6966 -1.7573 1.2351 18 6 1.5037 -0.0233 2.4984 19 7 1.8917 -0.7841 3.6888 20 6 1.5209 -0.3462 4.9321 21 1 0.9428 0.5602 5.0353 22 6 1.8890 -1.0668 6.0600 23 7 2.5940 -2.1711 5.9344 24 14 1.3826 -0.4699 7.7561 25 1 0.6011 0.7862 7.6259 26 1 0.5489 -1.5059 8.4170 27 1 2.5957 -0.2150 8.5738 28 1 -0.3632 0.5126 0.8907 29 1 -0.3633 0.5151 -0.8892 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6051 -1.7217 -1.2981 32 1 1.7615 -0.1594 -2.1390 33 1 6.1321 0.0571 -1.2132 34 1 6.0586 -1.5496 -1.9756 35 1 6.0674 -0.4878 -4.2160 36 1 6.1409 1.1193 -3.4543 37 1 5.1895 -1.3249 -0.0138 38 1 3.8373 -2.4820 0.0867 39 1 3.9334 -1.1898 2.1670 40 1 3.9164 0.3385 1.2543 41 1 1.9195 0.9825 2.5585 42 1 0.4167 0.0356 2.4432 43 1 2.4119 -1.5975 3.5962 44 1 2.8515 -2.6745 6.7226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184135901.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:17 Heat of formation + Delta-G solvation = -217.912830 kcal Electronic energy + Delta-G solvation = -27892.955113 eV Core-core repulsion = 23428.847281 eV Total energy + Delta-G solvation = -4464.107832 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -51.08103 -48.58826 -48.55730 -41.41754 -39.31991 -36.56745 -35.17794 -34.63264 -33.37217 -31.98775 -29.06193 -28.31770 -26.90548 -25.47403 -23.92153 -23.41100 -22.64739 -21.08469 -20.16914 -19.53363 -19.29667 -19.11449 -18.69110 -17.41273 -17.01236 -16.89075 -16.65208 -15.82598 -15.61645 -15.51262 -15.45649 -15.23865 -15.01461 -14.99683 -14.85823 -14.70523 -14.69500 -14.29867 -14.24007 -13.88123 -13.79355 -13.35242 -13.10450 -12.93597 -12.87734 -12.79686 -12.73364 -12.60041 -12.39731 -12.13226 -11.93568 -11.88720 -11.61880 -11.46500 -11.16203 -10.94589 -10.81489 -9.65644 -8.94759 -7.93842 -5.20949 1.48082 1.48542 1.53615 1.58170 1.68184 2.03350 2.56986 2.83292 3.00462 3.10610 3.39976 3.52337 3.70063 3.75349 3.84893 3.91269 3.97841 4.03973 4.25902 4.31721 4.39573 4.48578 4.55328 4.63120 4.66330 4.69316 4.77339 4.80399 4.83721 4.89289 5.02115 5.12274 5.15353 5.21770 5.31311 5.38116 5.49377 5.54815 5.61818 6.29571 6.36305 7.07004 7.36411 8.13128 8.37117 9.29617 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.016173 B = 0.002660 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.896621 B =10524.319304 C =11778.693386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.066 0.934 4 C 0.120 3.880 5 N -0.606 5.606 6 C 0.520 3.480 7 O -0.579 6.579 8 C -0.145 4.145 9 C -0.143 4.143 10 C 0.457 3.543 11 F -0.186 7.186 12 F -0.189 7.189 13 F -0.188 7.188 14 C 0.109 3.891 15 C -0.123 4.123 16 C -0.080 4.080 17 H 0.068 0.932 18 C 0.156 3.844 19 N -0.741 5.741 20 C -0.242 4.242 21 H 0.070 0.930 22 C -0.073 4.073 23 N -0.966 5.966 24 Si 0.968 3.032 25 H -0.269 1.269 26 H -0.293 1.293 27 H -0.293 1.293 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.010 0.990 42 H 0.024 0.976 43 H 0.376 0.624 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.318 2.301 -21.020 22.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 H 0.084 0.916 4 C -0.002 4.002 5 N -0.338 5.338 6 C 0.310 3.690 7 O -0.460 6.460 8 C -0.184 4.184 9 C -0.182 4.182 10 C 0.403 3.597 11 F -0.168 7.168 12 F -0.171 7.171 13 F -0.170 7.170 14 C -0.013 4.013 15 C -0.161 4.161 16 C -0.098 4.098 17 H 0.087 0.913 18 C 0.030 3.970 19 N -0.385 5.385 20 C -0.374 4.374 21 H 0.088 0.912 22 C -0.265 4.265 23 N -0.617 5.617 24 Si 0.798 3.202 25 H -0.194 1.194 26 H -0.221 1.221 27 H -0.220 1.220 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.139 0.861 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.128 0.872 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.028 0.972 42 H 0.042 0.958 43 H 0.209 0.791 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.996 2.677 -21.419 22.691 hybrid contribution 0.157 -0.058 1.398 1.408 sum 7.153 2.619 -20.020 21.420 Atomic orbital electron populations 1.21805 0.93661 1.02539 1.02254 1.21350 0.96712 0.99243 0.93383 0.91594 1.21656 0.79013 1.01314 0.98211 1.48197 1.07136 1.60074 1.18378 1.20677 0.89783 0.76646 0.81928 1.90690 1.76333 1.46581 1.32370 1.21710 0.91068 1.06190 0.99478 1.22558 0.86099 1.07652 1.01865 1.20646 0.92652 0.73301 0.73123 1.93187 1.93743 1.34281 1.95570 1.93185 1.86917 1.86843 1.50138 1.93194 1.91364 1.78509 1.53908 1.21950 0.99436 0.97541 0.82334 1.21840 0.95219 1.01093 0.97937 1.21229 0.95533 0.99602 0.93481 0.91344 1.20895 0.96708 0.93591 0.85850 1.42558 1.65270 1.29083 1.01541 1.19618 1.26703 1.05856 0.85267 0.91159 1.25473 1.01739 0.98043 1.01250 1.69792 1.44395 1.18465 1.29024 0.85149 0.77123 0.77522 0.80427 1.19390 1.22067 1.22048 0.92682 0.91231 0.92097 0.90374 0.89521 0.86137 0.85490 0.86020 0.86405 0.87162 0.89834 0.91514 0.92148 0.97214 0.95771 0.79127 0.94017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.82 71.98 0.63 -2.51 16 2 C -0.09 -2.03 2.42 -10.71 -0.03 -2.06 16 3 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 4 C 0.12 2.53 5.71 86.36 0.49 3.02 16 5 N -0.61 -12.11 2.97 -818.89 -2.43 -14.55 16 6 C 0.52 10.46 7.70 87.66 0.67 11.14 16 7 O -0.58 -15.35 15.40 -3.03 -0.05 -15.40 16 8 C -0.14 -1.91 3.80 29.85 0.11 -1.79 16 9 C -0.14 -1.85 4.55 30.59 0.14 -1.71 16 10 C 0.46 6.70 3.16 71.98 0.23 6.93 16 11 F -0.19 -2.93 16.80 44.97 0.76 -2.17 16 12 F -0.19 -3.18 17.32 44.97 0.78 -2.41 16 13 F -0.19 -3.15 16.80 44.97 0.76 -2.39 16 14 C 0.11 2.02 6.34 86.36 0.55 2.56 16 15 C -0.12 -3.19 5.25 30.67 0.16 -3.03 16 16 C -0.08 -2.27 1.73 -10.77 -0.02 -2.28 16 17 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 18 C 0.16 5.90 5.41 86.38 0.47 6.37 16 19 N -0.74 -36.12 5.32 -343.44 -1.83 -37.94 16 20 C -0.24 -13.29 9.99 84.03 0.84 -12.45 16 21 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 22 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 23 N -0.97 -57.45 13.06 21.65 0.28 -57.17 16 24 Si 0.97 45.49 29.55 68.60 2.03 47.52 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 26 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 27 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 28 H 0.05 1.35 6.29 -2.39 -0.02 1.33 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.09 1.94 7.01 -2.39 -0.02 1.93 16 33 H 0.12 1.37 7.35 -2.39 -0.02 1.35 16 34 H 0.13 1.22 7.60 -2.39 -0.02 1.20 16 35 H 0.12 1.49 8.10 -2.39 -0.02 1.47 16 36 H 0.12 1.55 8.10 -2.39 -0.02 1.53 16 37 H 0.11 1.47 5.93 -2.39 -0.01 1.45 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.07 2.09 7.15 -2.39 -0.02 2.07 16 40 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.02 0.93 6.14 -2.39 -0.01 0.92 16 43 H 0.38 19.15 6.85 -92.71 -0.63 18.52 16 44 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -66.53 360.71 5.40 -61.13 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.39 Total: 22.82 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 4.72 Total: 0.56 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -3.98 Total: -109.66 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.05 Total: -15.40 kcal Atomic # 9 Polarization: -9.26 SS G_CDS: 2.29 Total: -6.97 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -66.53 5.40 -61.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184135901.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.780 kcal (2) G-P(sol) polarization free energy of solvation -66.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds