Wall clock time and date at job start Tue Mar 31 2020 16:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.49849 * 2 1 4 4 C 1.53188 * 109.49646 * 120.06363 * 2 1 3 5 5 N 1.46929 * 108.77645 * 174.61842 * 4 2 1 6 6 C 1.34771 * 120.63182 * 126.41350 * 5 4 2 7 7 O 1.21277 * 120.00314 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00049 * 180.02562 * 6 5 4 9 9 C 1.53003 * 109.47154 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.46761 * 179.97438 * 9 8 6 11 11 F 1.39902 * 109.47333 * 60.00149 * 10 9 8 12 12 F 1.39905 * 109.46869 * 180.02562 * 10 9 8 13 13 F 1.39896 * 109.47346 * 300.00137 * 10 9 8 14 14 C 1.46930 * 118.73732 * 306.39400 * 5 4 2 15 15 C 1.53186 * 108.77576 * 53.60420 * 14 5 4 16 16 C 1.53041 * 109.52119 * 239.91713 * 2 1 3 17 17 H 1.08997 * 109.46292 * 298.68808 * 16 2 1 18 18 C 1.52994 * 109.46164 * 58.65139 * 16 2 1 19 19 N 1.46501 * 109.47226 * 184.99618 * 18 16 2 20 20 C 1.36942 * 119.99738 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00039 * 359.97438 * 20 19 18 22 22 C 1.38815 * 119.99556 * 179.97438 * 20 19 18 23 23 N 1.31616 * 120.00246 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99969 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46863 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46832 * 119.99925 * 24 22 20 27 27 H 1.48496 * 109.47545 * 240.00340 * 24 22 20 28 28 H 1.09000 * 109.46996 * 300.00101 * 1 2 3 29 29 H 1.09004 * 109.46831 * 60.00032 * 1 2 3 30 30 H 1.09001 * 109.47236 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.59171 * 294.40467 * 4 2 1 32 32 H 1.09002 * 109.58959 * 54.83166 * 4 2 1 33 33 H 1.08995 * 109.47111 * 300.00307 * 8 6 5 34 34 H 1.09002 * 109.47121 * 59.99900 * 8 6 5 35 35 H 1.08997 * 109.46974 * 300.00172 * 9 8 6 36 36 H 1.08997 * 109.47050 * 60.00495 * 9 8 6 37 37 H 1.08992 * 109.58769 * 173.39532 * 14 5 4 38 38 H 1.09008 * 109.58720 * 293.81850 * 14 5 4 39 39 H 1.09000 * 109.49625 * 65.32030 * 15 14 5 40 40 H 1.09000 * 109.49684 * 185.38136 * 15 14 5 41 41 H 1.09005 * 109.46759 * 304.99744 * 18 16 2 42 42 H 1.08997 * 109.47511 * 64.99446 * 18 16 2 43 43 H 0.96995 * 120.00275 * 0.02562 * 19 18 16 44 44 H 0.97005 * 120.00252 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 1.2498 5 7 3.5047 -0.8281 1.1702 6 6 4.2807 -0.3849 2.1790 7 8 3.7723 0.1055 3.1648 8 6 5.7803 -0.4988 2.0822 9 6 6.4182 0.0739 3.3495 10 6 7.9406 -0.0424 3.2514 11 9 8.3922 0.6736 2.1376 12 9 8.5239 0.4807 4.4105 13 9 8.2978 -1.3883 3.1168 14 6 4.1060 -1.4255 -0.0300 15 6 3.5715 -0.6943 -1.2653 16 6 2.0414 -0.7230 -1.2481 17 1 1.6978 -1.7573 -1.2351 18 6 1.5044 -0.0235 -2.4984 19 7 1.8945 -0.7834 -3.6887 20 6 1.5232 -0.3461 -4.9321 21 1 0.9425 0.5585 -5.0353 22 6 1.8932 -1.0659 -6.0600 23 7 2.6005 -2.1687 -5.9342 24 14 1.3862 -0.4699 -7.7562 25 1 0.6019 0.7843 -7.6262 26 1 2.5991 -0.2123 -8.5734 27 1 0.5549 -1.5076 -8.4175 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.7633 -0.1576 2.1390 32 1 1.6057 -1.7214 1.2982 33 1 6.0590 -1.5473 1.9766 34 1 6.1318 0.0597 1.2147 35 1 6.1394 1.1223 3.4546 36 1 6.0668 -0.4843 4.2173 37 1 5.1901 -1.3230 0.0148 38 1 3.8387 -2.4808 -0.0859 39 1 3.9161 0.3398 -1.2535 40 1 3.9350 -1.1885 -2.1663 41 1 0.4172 0.0337 -2.4439 42 1 1.9187 0.9829 -2.5579 43 1 2.4151 -1.5965 -3.5959 44 1 2.8588 -2.6718 -6.7223 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184135903.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:24 Heat of formation + Delta-G solvation = -199.855085 kcal Electronic energy + Delta-G solvation = -27892.386582 eV Core-core repulsion = 23429.061793 eV Total energy + Delta-G solvation = -4463.324790 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.40747 -47.90577 -47.88037 -40.49390 -38.24359 -35.08396 -34.25992 -33.49211 -32.00961 -30.36577 -28.23415 -26.95364 -25.97853 -23.83041 -22.88211 -22.51913 -21.34888 -19.99826 -19.29447 -18.86984 -18.49959 -18.03232 -17.14812 -16.55880 -16.14284 -16.04685 -14.97236 -14.83531 -14.78002 -14.53593 -14.32134 -14.13774 -14.08043 -14.00430 -13.97483 -13.91780 -13.58072 -13.16296 -13.11950 -12.67228 -12.55583 -12.49673 -12.09677 -11.96847 -11.82436 -11.79157 -11.62999 -11.03258 -10.93055 -10.85872 -10.43105 -10.36843 -10.22730 -10.01966 -9.89929 -9.66881 -8.89635 -8.70625 -6.93443 -5.79892 -3.07769 2.36022 2.39234 2.82415 3.41038 3.47175 3.48777 3.49012 3.65635 3.73889 4.27763 4.47261 4.54105 4.56133 4.75101 4.88349 4.92587 4.97822 5.05720 5.21993 5.25418 5.37060 5.40456 5.46399 5.54661 5.64389 5.73817 5.80873 5.86365 5.92973 6.02711 6.17371 6.23931 6.28086 6.38843 6.45263 6.58195 6.79487 6.89216 7.22900 7.68273 7.93106 8.39577 9.50915 10.08905 10.43376 11.43128 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.016167 B = 0.002660 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.525426 B =10522.496109 C =11777.723022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.073 0.927 4 C 0.117 3.883 5 N -0.605 5.605 6 C 0.521 3.479 7 O -0.548 6.548 8 C -0.148 4.148 9 C -0.150 4.150 10 C 0.452 3.548 11 F -0.183 7.183 12 F -0.184 7.184 13 F -0.184 7.184 14 C 0.102 3.898 15 C -0.127 4.127 16 C -0.089 4.089 17 H 0.072 0.928 18 C 0.156 3.844 19 N -0.732 5.732 20 C -0.237 4.237 21 H 0.070 0.930 22 C -0.014 4.014 23 N -0.934 5.934 24 Si 0.905 3.095 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.091 0.909 41 H 0.024 0.976 42 H 0.016 0.984 43 H 0.383 0.617 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.100 2.179 20.202 21.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 H 0.091 0.909 4 C -0.005 4.005 5 N -0.337 5.337 6 C 0.309 3.691 7 O -0.427 6.427 8 C -0.188 4.188 9 C -0.188 4.188 10 C 0.398 3.602 11 F -0.164 7.164 12 F -0.165 7.165 13 F -0.165 7.165 14 C -0.020 4.020 15 C -0.165 4.165 16 C -0.108 4.108 17 H 0.091 0.909 18 C 0.029 3.971 19 N -0.376 5.376 20 C -0.368 4.368 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.583 5.583 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.109 0.891 41 H 0.042 0.958 42 H 0.034 0.966 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.790 2.533 20.582 21.820 hybrid contribution 0.242 -0.069 -1.185 1.211 sum 7.032 2.463 19.397 20.779 Atomic orbital electron populations 1.21832 0.94331 1.02221 1.02092 1.21461 0.96181 0.99914 0.94133 0.90902 1.21732 0.78476 1.01005 0.99269 1.48144 1.07244 1.60151 1.18171 1.20197 0.88632 0.77658 0.82629 1.90698 1.75488 1.45295 1.31193 1.21674 0.93558 1.04691 0.98883 1.22606 0.86909 1.07496 1.01796 1.20599 0.92438 0.73598 0.73550 1.93204 1.91236 1.78383 1.53579 1.93196 1.86787 1.86723 1.49819 1.93191 1.93649 1.34102 1.95590 1.21958 0.98035 0.97758 0.84278 1.21943 0.96155 1.01170 0.97211 1.21341 0.94665 1.00229 0.94573 0.90928 1.20753 0.96690 0.94055 0.85616 1.42384 1.65371 1.29023 1.00863 1.19268 1.27487 1.06272 0.83815 0.91241 1.24721 1.00938 0.97552 0.97812 1.69655 1.42805 1.17369 1.28458 0.86136 0.77672 0.77762 0.84749 1.20601 1.21887 1.21887 0.92993 0.91268 0.92484 0.89170 0.91383 0.87426 0.87269 0.86422 0.86486 0.89846 0.90772 0.91694 0.89105 0.95796 0.96578 0.78328 0.93591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.82 37.16 0.33 -1.36 16 2 C -0.10 -1.19 2.41 -90.50 -0.22 -1.41 16 3 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 4 C 0.12 1.34 5.72 -3.71 -0.02 1.32 16 5 N -0.60 -6.68 2.97 -172.77 -0.51 -7.20 16 6 C 0.52 5.79 7.70 -10.99 -0.08 5.71 16 7 O -0.55 -7.69 15.39 5.56 0.09 -7.61 16 8 C -0.15 -1.17 3.80 -27.88 -0.11 -1.27 16 9 C -0.15 -1.11 4.55 -26.73 -0.12 -1.24 16 10 C 0.45 3.72 3.16 37.16 0.12 3.84 16 11 F -0.18 -1.68 16.80 2.25 0.04 -1.65 16 12 F -0.18 -1.67 17.32 2.25 0.04 -1.63 16 13 F -0.18 -1.63 16.80 2.25 0.04 -1.59 16 14 C 0.10 1.05 6.34 -3.71 -0.02 1.03 16 15 C -0.13 -1.70 5.25 -26.61 -0.14 -1.84 16 16 C -0.09 -1.30 1.73 -90.58 -0.16 -1.45 16 17 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 18 C 0.16 2.95 5.41 -4.04 -0.02 2.93 16 19 N -0.73 -17.65 5.32 -59.91 -0.32 -17.97 16 20 C -0.24 -6.48 9.99 -15.06 -0.15 -6.63 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -27.49 13.06 55.49 0.72 -26.77 16 24 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.87 6.30 -51.93 -0.33 0.54 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 1.09 7.01 -51.93 -0.36 0.72 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.11 0.70 7.60 -51.93 -0.39 0.30 16 34 H 0.11 0.78 7.35 -51.93 -0.38 0.40 16 35 H 0.12 0.87 8.10 -51.93 -0.42 0.45 16 36 H 0.12 0.83 8.10 -51.93 -0.42 0.41 16 37 H 0.08 0.68 5.93 -51.93 -0.31 0.38 16 38 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.09 1.42 7.15 -51.93 -0.37 1.05 16 41 H 0.02 0.46 6.14 -51.93 -0.32 0.14 16 42 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.38 9.58 6.84 -40.82 -0.28 9.30 16 44 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 360.71 15.07 5.44 5.44 Total: -1.00 -31.28 360.71 -6.70 -37.99 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -6.51 Total: 4.81 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -0.70 Total: -0.88 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -0.11 Total: -51.93 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: 0.09 Total: -7.61 kcal Atomic # 9 Polarization: -4.98 SS G_CDS: 0.11 Total: -4.86 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.28 -6.70 -37.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184135903.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.869 kcal (2) G-P(sol) polarization free energy of solvation -31.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds