Wall clock time and date at job start Tue Mar 31 2020 16:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.49849 * 2 1 4 4 C 1.53188 * 109.49646 * 120.06363 * 2 1 3 5 5 N 1.46929 * 108.77645 * 174.61842 * 4 2 1 6 6 C 1.34771 * 120.63182 * 126.41350 * 5 4 2 7 7 O 1.21277 * 120.00314 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00049 * 180.02562 * 6 5 4 9 9 C 1.53003 * 109.47154 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.46761 * 179.97438 * 9 8 6 11 11 F 1.39902 * 109.47333 * 60.00149 * 10 9 8 12 12 F 1.39905 * 109.46869 * 180.02562 * 10 9 8 13 13 F 1.39896 * 109.47346 * 300.00137 * 10 9 8 14 14 C 1.46930 * 118.73732 * 306.39400 * 5 4 2 15 15 C 1.53186 * 108.77576 * 53.60420 * 14 5 4 16 16 C 1.53041 * 109.52119 * 239.91713 * 2 1 3 17 17 H 1.08997 * 109.46292 * 298.68808 * 16 2 1 18 18 C 1.52994 * 109.46164 * 58.65139 * 16 2 1 19 19 N 1.46501 * 109.47226 * 184.99618 * 18 16 2 20 20 C 1.36942 * 119.99738 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00039 * 359.97438 * 20 19 18 22 22 C 1.38815 * 119.99556 * 179.97438 * 20 19 18 23 23 N 1.31616 * 120.00246 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99969 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46863 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46832 * 119.99925 * 24 22 20 27 27 H 1.48496 * 109.47545 * 240.00340 * 24 22 20 28 28 H 1.09000 * 109.46996 * 300.00101 * 1 2 3 29 29 H 1.09004 * 109.46831 * 60.00032 * 1 2 3 30 30 H 1.09001 * 109.47236 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.59171 * 294.40467 * 4 2 1 32 32 H 1.09002 * 109.58959 * 54.83166 * 4 2 1 33 33 H 1.08995 * 109.47111 * 300.00307 * 8 6 5 34 34 H 1.09002 * 109.47121 * 59.99900 * 8 6 5 35 35 H 1.08997 * 109.46974 * 300.00172 * 9 8 6 36 36 H 1.08997 * 109.47050 * 60.00495 * 9 8 6 37 37 H 1.08992 * 109.58769 * 173.39532 * 14 5 4 38 38 H 1.09008 * 109.58720 * 293.81850 * 14 5 4 39 39 H 1.09000 * 109.49625 * 65.32030 * 15 14 5 40 40 H 1.09000 * 109.49684 * 185.38136 * 15 14 5 41 41 H 1.09005 * 109.46759 * 304.99744 * 18 16 2 42 42 H 1.08997 * 109.47511 * 64.99446 * 18 16 2 43 43 H 0.96995 * 120.00275 * 0.02562 * 19 18 16 44 44 H 0.97005 * 120.00252 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 1.2498 5 7 3.5047 -0.8281 1.1702 6 6 4.2807 -0.3849 2.1790 7 8 3.7723 0.1055 3.1648 8 6 5.7803 -0.4988 2.0822 9 6 6.4182 0.0739 3.3495 10 6 7.9406 -0.0424 3.2514 11 9 8.3922 0.6736 2.1376 12 9 8.5239 0.4807 4.4105 13 9 8.2978 -1.3883 3.1168 14 6 4.1060 -1.4255 -0.0300 15 6 3.5715 -0.6943 -1.2653 16 6 2.0414 -0.7230 -1.2481 17 1 1.6978 -1.7573 -1.2351 18 6 1.5044 -0.0235 -2.4984 19 7 1.8945 -0.7834 -3.6887 20 6 1.5232 -0.3461 -4.9321 21 1 0.9425 0.5585 -5.0353 22 6 1.8932 -1.0659 -6.0600 23 7 2.6005 -2.1687 -5.9342 24 14 1.3862 -0.4699 -7.7562 25 1 0.6019 0.7843 -7.6262 26 1 2.5991 -0.2123 -8.5734 27 1 0.5549 -1.5076 -8.4175 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.7633 -0.1576 2.1390 32 1 1.6057 -1.7214 1.2982 33 1 6.0590 -1.5473 1.9766 34 1 6.1318 0.0597 1.2147 35 1 6.1394 1.1223 3.4546 36 1 6.0668 -0.4843 4.2173 37 1 5.1901 -1.3230 0.0148 38 1 3.8387 -2.4808 -0.0859 39 1 3.9161 0.3398 -1.2535 40 1 3.9350 -1.1885 -2.1663 41 1 0.4172 0.0337 -2.4439 42 1 1.9187 0.9829 -2.5579 43 1 2.4151 -1.5965 -3.5959 44 1 2.8588 -2.6718 -6.7223 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184135903.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:23 Heat of formation + Delta-G solvation = -217.912920 kcal Electronic energy + Delta-G solvation = -27893.169629 eV Core-core repulsion = 23429.061793 eV Total energy + Delta-G solvation = -4464.107836 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -51.08076 -48.58795 -48.55717 -41.41858 -39.31995 -36.56750 -35.17787 -34.63250 -33.37260 -31.98781 -29.06195 -28.31866 -26.90507 -25.47394 -23.92166 -23.41111 -22.64652 -21.08421 -20.16871 -19.53354 -19.29653 -19.11468 -18.69117 -17.41287 -17.01210 -16.89117 -16.65167 -15.82535 -15.61668 -15.51274 -15.45649 -15.23883 -15.01455 -14.99703 -14.85887 -14.70528 -14.69514 -14.29853 -14.23979 -13.88086 -13.79410 -13.35251 -13.10477 -12.93611 -12.87651 -12.79743 -12.73401 -12.60108 -12.39756 -12.13273 -11.93525 -11.88781 -11.61827 -11.46483 -11.16257 -10.94569 -10.81472 -9.65686 -8.94749 -7.93839 -5.20961 1.48091 1.48544 1.53653 1.58187 1.68174 2.03337 2.56979 2.83301 3.00436 3.10583 3.39971 3.52364 3.70078 3.75338 3.84845 3.91298 3.97834 4.04013 4.25905 4.31774 4.39605 4.48645 4.55301 4.63117 4.66331 4.69331 4.77319 4.80390 4.83669 4.89307 5.02139 5.12311 5.15363 5.21742 5.31254 5.38073 5.49415 5.54822 5.61776 6.29568 6.36295 7.07010 7.36415 8.13155 8.37116 9.29602 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.016167 B = 0.002660 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.525426 B =10522.496109 C =11777.723022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.066 0.934 4 C 0.120 3.880 5 N -0.606 5.606 6 C 0.520 3.480 7 O -0.579 6.579 8 C -0.145 4.145 9 C -0.143 4.143 10 C 0.457 3.543 11 F -0.188 7.188 12 F -0.189 7.189 13 F -0.186 7.186 14 C 0.109 3.891 15 C -0.123 4.123 16 C -0.080 4.080 17 H 0.068 0.932 18 C 0.156 3.844 19 N -0.741 5.741 20 C -0.243 4.243 21 H 0.070 0.930 22 C -0.072 4.072 23 N -0.966 5.966 24 Si 0.968 3.032 25 H -0.269 1.269 26 H -0.293 1.293 27 H -0.293 1.293 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.127 0.873 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.110 0.890 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.024 0.976 42 H 0.010 0.990 43 H 0.376 0.624 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.295 2.298 21.020 22.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 H 0.084 0.916 4 C -0.002 4.002 5 N -0.338 5.338 6 C 0.310 3.690 7 O -0.460 6.460 8 C -0.184 4.184 9 C -0.182 4.182 10 C 0.403 3.597 11 F -0.170 7.170 12 F -0.171 7.171 13 F -0.168 7.168 14 C -0.013 4.013 15 C -0.161 4.161 16 C -0.098 4.098 17 H 0.087 0.913 18 C 0.030 3.970 19 N -0.385 5.385 20 C -0.375 4.375 21 H 0.088 0.912 22 C -0.265 4.265 23 N -0.617 5.617 24 Si 0.798 3.202 25 H -0.194 1.194 26 H -0.220 1.220 27 H -0.221 1.221 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.145 0.855 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.128 0.872 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.042 0.958 42 H 0.028 0.972 43 H 0.209 0.791 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.974 2.676 21.419 22.684 hybrid contribution 0.156 -0.060 -1.398 1.408 sum 7.130 2.616 20.021 21.413 Atomic orbital electron populations 1.21806 0.93659 1.02539 1.02252 1.21350 0.96713 0.99244 0.93383 0.91598 1.21664 0.79004 1.01310 0.98208 1.48201 1.07146 1.60077 1.18371 1.20674 0.89786 0.76645 0.81927 1.90689 1.76314 1.46603 1.32368 1.21711 0.91073 1.06183 0.99480 1.22558 0.86098 1.07647 1.01870 1.20647 0.92654 0.73299 0.73123 1.93195 1.91368 1.78534 1.53878 1.93186 1.86936 1.86809 1.50152 1.93187 1.93726 1.34291 1.95578 1.21947 0.99427 0.97547 0.82344 1.21840 0.95220 1.01092 0.97935 1.21228 0.95532 0.99602 0.93480 0.91344 1.20892 0.96693 0.93603 0.85851 1.42558 1.65188 1.29173 1.01535 1.19620 1.26589 1.05984 0.85261 0.91157 1.25473 1.01719 0.98056 1.01249 1.69791 1.44293 1.18556 1.29032 0.85149 0.77125 0.77521 0.80431 1.19391 1.22048 1.22064 0.91239 0.92674 0.92098 0.89523 0.90356 0.85487 0.86146 0.86403 0.86020 0.87169 0.89833 0.92155 0.91510 0.95783 0.97210 0.79126 0.94015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.82 71.98 0.63 -2.51 16 2 C -0.09 -2.03 2.41 -10.72 -0.03 -2.06 16 3 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 4 C 0.12 2.53 5.72 86.36 0.49 3.02 16 5 N -0.61 -12.12 2.97 -818.92 -2.43 -14.55 16 6 C 0.52 10.47 7.70 87.66 0.67 11.14 16 7 O -0.58 -15.35 15.39 -3.02 -0.05 -15.40 16 8 C -0.15 -1.91 3.80 29.85 0.11 -1.80 16 9 C -0.14 -1.85 4.55 30.59 0.14 -1.72 16 10 C 0.46 6.71 3.16 71.98 0.23 6.94 16 11 F -0.19 -3.15 16.80 44.97 0.76 -2.39 16 12 F -0.19 -3.19 17.32 44.97 0.78 -2.41 16 13 F -0.19 -2.93 16.80 44.97 0.76 -2.17 16 14 C 0.11 2.02 6.34 86.36 0.55 2.56 16 15 C -0.12 -3.19 5.25 30.67 0.16 -3.03 16 16 C -0.08 -2.26 1.73 -10.77 -0.02 -2.28 16 17 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 18 C 0.16 5.91 5.41 86.38 0.47 6.37 16 19 N -0.74 -36.12 5.32 -343.45 -1.83 -37.94 16 20 C -0.24 -13.30 9.99 84.03 0.84 -12.46 16 21 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 22 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 23 N -0.97 -57.44 13.06 21.65 0.28 -57.16 16 24 Si 0.97 45.48 29.55 68.60 2.03 47.51 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 26 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 27 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.05 1.35 6.30 -2.38 -0.02 1.33 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.09 1.94 7.01 -2.39 -0.02 1.93 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.13 1.22 7.60 -2.39 -0.02 1.20 16 34 H 0.12 1.37 7.35 -2.39 -0.02 1.35 16 35 H 0.12 1.55 8.10 -2.39 -0.02 1.53 16 36 H 0.12 1.49 8.10 -2.39 -0.02 1.47 16 37 H 0.11 1.47 5.93 -2.39 -0.01 1.45 16 38 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.07 2.09 7.15 -2.39 -0.02 2.07 16 41 H 0.02 0.93 6.14 -2.38 -0.01 0.91 16 42 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.38 19.15 6.84 -92.71 -0.63 18.52 16 44 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 Total: -1.00 -66.52 360.71 5.40 -61.12 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.39 Total: 22.82 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 4.72 Total: 0.57 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -3.98 Total: -109.65 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.05 Total: -15.40 kcal Atomic # 9 Polarization: -9.26 SS G_CDS: 2.29 Total: -6.97 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -66.52 5.40 -61.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184135903.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.790 kcal (2) G-P(sol) polarization free energy of solvation -66.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds