Wall clock time and date at job start Tue Mar 31 2020 16:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35373 * 116.99930 * 2 1 4 4 C 1.36094 * 125.58027 * 179.97438 * 3 2 1 5 5 C 1.39908 * 107.17733 * 180.02562 * 4 3 2 6 6 C 1.37825 * 106.67694 * 0.23875 * 5 4 3 7 7 C 1.46128 * 126.03133 * 179.75893 * 6 5 4 8 8 O 1.21774 * 120.00258 * 7.63163 * 7 6 5 9 9 N 1.34779 * 120.00046 * 187.63102 * 7 6 5 10 10 C 1.46920 * 120.63202 * 7.40921 * 9 7 6 11 11 C 1.53199 * 108.77576 * 126.36910 * 10 9 7 12 12 C 1.53045 * 109.31163 * 54.63741 * 11 10 9 13 13 H 1.09004 * 109.45975 * 58.65345 * 12 11 10 14 14 C 1.52991 * 109.46136 * 178.61494 * 12 11 10 15 15 N 1.46507 * 109.47030 * 295.00142 * 14 12 11 16 16 C 1.36937 * 119.99641 * 179.97438 * 15 14 12 17 17 H 1.08003 * 120.00230 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99887 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99788 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00376 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.46772 * 60.00088 * 20 18 16 22 22 H 1.48500 * 109.47095 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46847 * 300.00680 * 20 18 16 24 24 C 1.53042 * 109.53691 * 298.63657 * 12 11 10 25 25 H 1.08998 * 109.49744 * 301.41226 * 24 12 11 26 26 C 1.52994 * 109.49564 * 181.31655 * 24 12 11 27 27 C 1.46933 * 120.62885 * 187.13319 * 9 7 6 28 28 O 1.34007 * 125.57535 * 0.02562 * 3 2 1 29 29 H 1.09001 * 109.47360 * 59.99747 * 1 2 3 30 30 H 1.09001 * 109.47272 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47283 * 299.99517 * 1 2 3 32 32 H 1.07999 * 126.40750 * 359.97438 * 4 3 2 33 33 H 1.07993 * 126.66080 * 179.97438 * 5 4 3 34 34 H 1.08994 * 109.59485 * 246.15782 * 10 9 7 35 35 H 1.08999 * 109.58539 * 6.58470 * 10 9 7 36 36 H 1.08993 * 109.49929 * 174.58726 * 11 10 9 37 37 H 1.08997 * 109.49434 * 294.65528 * 11 10 9 38 38 H 1.09003 * 109.47050 * 54.99866 * 14 12 11 39 39 H 1.08999 * 109.47173 * 174.99952 * 14 12 11 40 40 H 0.96994 * 120.00040 * 0.02562 * 15 14 12 41 41 H 0.97002 * 120.00218 * 179.97438 * 19 18 16 42 42 H 1.08995 * 109.47472 * 60.00160 * 26 24 12 43 43 H 1.09005 * 109.47309 * 180.02562 * 26 24 12 44 44 H 1.09000 * 109.47171 * 299.99416 * 26 24 12 45 45 H 1.08994 * 109.58886 * 353.41748 * 27 9 7 46 46 H 1.09000 * 109.58640 * 113.84507 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2062 0.0000 4 6 3.3892 1.4092 0.0005 5 6 3.5984 2.7926 0.0009 6 6 2.3520 3.3810 0.0061 7 6 2.0793 4.8166 0.0134 8 8 2.9922 5.6106 -0.1248 9 7 0.8173 5.2620 0.1730 10 6 -0.2696 4.3297 0.5017 11 6 -0.9913 4.8358 1.7547 12 6 -1.4480 6.2788 1.5277 13 1 -2.1082 6.3186 0.6613 14 6 -2.1994 6.7761 2.7641 15 7 -3.4314 6.0012 2.9313 16 6 -4.2721 6.2694 3.9785 17 1 -4.0271 7.0524 4.6808 18 6 -5.4397 5.5356 4.1366 19 7 -5.7385 4.5817 3.2804 20 14 -6.5870 5.9018 5.5646 21 1 -7.0563 7.3077 5.4744 22 1 -7.7541 4.9852 5.5096 23 1 -5.8620 5.7032 6.8454 24 6 -0.2279 7.1689 1.2803 25 1 0.4448 7.1102 2.1359 26 6 -0.6829 8.6166 1.0860 27 6 0.5034 6.6900 0.0274 28 8 1.4263 2.3957 0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 4.1527 0.6454 0.0013 33 1 4.5513 3.3007 0.0017 34 1 -0.9726 4.2801 -0.3298 35 1 0.1437 3.3395 0.6930 36 1 -1.8588 4.2068 1.9540 37 1 -0.3115 4.7985 2.6060 38 1 -1.5702 6.6528 3.6456 39 1 -2.4472 7.8302 2.6391 40 1 -3.6513 5.2977 2.3007 41 1 -6.5543 4.0686 3.3910 42 1 -1.2049 8.9565 1.9804 43 1 0.1863 9.2502 0.9094 44 1 -1.3543 8.6746 0.2293 45 1 1.4265 7.2565 -0.0941 46 1 -0.1353 6.8368 -0.8436 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185359644.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:03 Heat of formation + Delta-G solvation = -42.251469 kcal Electronic energy + Delta-G solvation = -27982.877858 eV Core-core repulsion = 24068.244014 eV Total energy + Delta-G solvation = -3914.633844 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.03675 -40.16855 -38.80493 -37.99545 -35.10160 -33.76241 -33.30783 -32.03078 -30.38127 -29.92077 -27.81151 -26.93379 -26.33795 -23.96267 -22.86314 -22.35205 -22.10605 -21.25321 -20.34172 -19.54766 -18.71445 -17.52687 -17.27701 -17.05328 -16.26711 -15.64220 -15.52891 -15.04667 -14.71824 -14.56911 -14.30571 -14.01171 -13.60567 -13.50199 -13.45508 -13.31800 -13.23969 -12.81525 -12.59779 -12.45922 -12.25833 -11.94516 -11.84534 -11.79798 -11.56542 -11.01329 -10.89885 -10.82107 -10.44258 -10.40637 -10.27330 -10.21509 -10.10275 -9.91984 -9.64754 -8.87936 -8.74225 -8.26244 -6.92557 -5.79062 -3.06786 0.85856 1.94341 2.13399 2.74539 2.98143 3.11299 3.42336 3.46824 3.47649 4.35637 4.56669 4.57355 4.74298 4.83157 4.85196 4.93660 4.97555 5.05766 5.11745 5.24774 5.31361 5.36315 5.47967 5.55121 5.58321 5.59941 5.68523 5.77409 5.84398 5.91685 5.96014 6.03836 6.06893 6.16123 6.25139 6.28399 6.33333 6.46212 6.50648 6.59775 6.81971 6.87459 6.92001 7.25952 7.67965 7.94503 8.40514 9.51633 10.09891 10.44613 11.43935 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.012573 B = 0.003419 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.455388 B = 8187.416725 C =10070.936683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.263 6.263 3 C 0.209 3.791 4 C -0.244 4.244 5 C -0.082 4.082 6 C -0.100 4.100 7 C 0.606 3.394 8 O -0.530 6.530 9 N -0.600 5.600 10 C 0.097 3.903 11 C -0.124 4.124 12 C -0.089 4.089 13 H 0.072 0.928 14 C 0.156 3.844 15 N -0.732 5.732 16 C -0.238 4.238 17 H 0.069 0.931 18 C -0.014 4.014 19 N -0.935 5.935 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.098 4.098 25 H 0.074 0.926 26 C -0.146 4.146 27 C 0.119 3.881 28 O -0.180 6.180 29 H 0.065 0.935 30 H 0.112 0.888 31 H 0.068 0.932 32 H 0.162 0.838 33 H 0.166 0.834 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.017 0.983 39 H 0.025 0.975 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.092 0.908 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.077 -5.450 -9.822 19.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.177 6.177 3 C 0.113 3.887 4 C -0.264 4.264 5 C -0.102 4.102 6 C -0.149 4.149 7 C 0.395 3.605 8 O -0.410 6.410 9 N -0.331 5.331 10 C -0.024 4.024 11 C -0.163 4.163 12 C -0.108 4.108 13 H 0.091 0.909 14 C 0.029 3.971 15 N -0.376 5.376 16 C -0.369 4.369 17 H 0.087 0.913 18 C -0.209 4.209 19 N -0.584 5.584 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.118 4.118 25 H 0.092 0.908 26 C -0.204 4.204 27 C -0.003 4.003 28 O -0.081 6.081 29 H 0.084 0.916 30 H 0.130 0.870 31 H 0.087 0.913 32 H 0.180 0.820 33 H 0.184 0.816 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.034 0.966 39 H 0.043 0.957 40 H 0.216 0.784 41 H 0.065 0.935 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.111 0.889 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.214 -5.084 -9.754 19.593 hybrid contribution -1.125 -0.284 0.662 1.336 sum 15.089 -5.368 -9.092 18.417 Atomic orbital electron populations 1.23251 0.76146 1.05259 1.03115 1.86395 1.23469 1.18887 1.88965 1.21052 0.89813 0.78735 0.99103 1.20758 0.92104 0.96843 1.16648 1.21954 0.97699 0.92549 0.98022 1.21903 0.86973 0.87355 1.18705 1.16483 0.82886 0.84081 0.77032 1.90871 1.44011 1.53933 1.52159 1.48017 1.07326 1.09243 1.68548 1.22250 0.88932 0.92822 0.98425 1.21937 1.00690 0.97409 0.96215 1.21349 0.95585 0.93789 1.00068 0.90922 1.20757 0.88145 0.94753 0.93445 1.42366 1.21110 1.41578 1.32548 1.19194 1.00106 1.14308 1.03314 0.91325 1.24708 0.98501 0.98703 0.99035 1.69639 1.26447 1.24611 1.37730 0.86279 0.80459 0.77365 0.82167 1.21291 1.21700 1.21312 1.21391 0.97120 0.95633 0.97646 0.90769 1.21825 1.00991 0.94770 1.02814 1.21691 1.00947 0.79631 0.98016 1.84248 1.36806 1.14144 1.72860 0.91628 0.87012 0.91301 0.82029 0.81616 0.91054 0.88579 0.89238 0.91760 0.96555 0.95713 0.78360 0.93534 0.91242 0.92900 0.92481 0.88924 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 10.74 101.05 1.09 1.21 16 2 O -0.26 -2.59 10.55 -41.04 -0.43 -3.03 16 3 C 0.21 2.31 7.86 29.96 0.24 2.54 16 4 C -0.24 -2.48 10.89 -39.73 -0.43 -2.91 16 5 C -0.08 -0.91 10.67 -39.11 -0.42 -1.33 16 6 C -0.10 -1.28 6.79 -36.57 -0.25 -1.53 16 7 C 0.61 8.74 7.63 -13.09 -0.10 8.64 16 8 O -0.53 -8.76 16.30 5.12 0.08 -8.67 16 9 N -0.60 -8.04 2.98 -174.77 -0.52 -8.56 16 10 C 0.10 1.25 6.10 -3.71 -0.02 1.22 16 11 C -0.12 -1.86 5.25 -26.61 -0.14 -2.00 16 12 C -0.09 -1.37 1.73 -90.58 -0.16 -1.53 16 13 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 14 C 0.16 3.05 5.41 -4.04 -0.02 3.03 16 15 N -0.73 -17.96 5.32 -59.91 -0.32 -18.28 16 16 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 17 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 19 N -0.94 -27.63 13.06 55.49 0.72 -26.91 16 20 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 C -0.10 -1.29 2.40 -90.72 -0.22 -1.51 16 25 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 26 C -0.15 -1.75 8.82 37.15 0.33 -1.42 16 27 C 0.12 1.49 5.70 -3.93 -0.02 1.47 16 28 O -0.18 -2.14 6.74 -19.28 -0.13 -2.27 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.17 1.59 8.06 -52.49 -0.42 1.16 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 1.20 4.25 -53.02 -0.23 0.97 16 36 H 0.09 1.50 7.15 -51.93 -0.37 1.13 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.03 0.49 6.14 -51.93 -0.32 0.17 16 40 H 0.38 9.74 6.85 -40.82 -0.28 9.46 16 41 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.07 0.90 6.29 -51.93 -0.33 0.57 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.09 1.19 7.00 -51.93 -0.36 0.83 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 370.79 15.07 5.59 5.59 Total: -1.00 -31.92 370.79 -7.33 -39.26 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.93 Total: 7.04 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -0.38 Total: -1.32 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.11 Total: -53.74 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.48 Total: -13.97 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.92 -7.33 -39.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185359644.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.996 kcal (2) G-P(sol) polarization free energy of solvation -31.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds