Wall clock time and date at job start Tue Mar 31 2020 16:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35373 * 116.99930 * 2 1 4 4 C 1.36094 * 125.58027 * 179.97438 * 3 2 1 5 5 C 1.39908 * 107.17733 * 180.02562 * 4 3 2 6 6 C 1.37825 * 106.67694 * 0.23875 * 5 4 3 7 7 C 1.46128 * 126.03133 * 179.75893 * 6 5 4 8 8 O 1.21774 * 120.00258 * 7.63163 * 7 6 5 9 9 N 1.34779 * 120.00046 * 187.63102 * 7 6 5 10 10 C 1.46920 * 120.63202 * 7.40921 * 9 7 6 11 11 C 1.53199 * 108.77576 * 126.36910 * 10 9 7 12 12 C 1.53045 * 109.31163 * 54.63741 * 11 10 9 13 13 H 1.09004 * 109.45975 * 58.65345 * 12 11 10 14 14 C 1.52991 * 109.46136 * 178.61494 * 12 11 10 15 15 N 1.46507 * 109.47030 * 295.00142 * 14 12 11 16 16 C 1.36937 * 119.99641 * 179.97438 * 15 14 12 17 17 H 1.08003 * 120.00230 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99887 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99788 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00376 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.46772 * 60.00088 * 20 18 16 22 22 H 1.48500 * 109.47095 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46847 * 300.00680 * 20 18 16 24 24 C 1.53042 * 109.53691 * 298.63657 * 12 11 10 25 25 H 1.08998 * 109.49744 * 301.41226 * 24 12 11 26 26 C 1.52994 * 109.49564 * 181.31655 * 24 12 11 27 27 C 1.46933 * 120.62885 * 187.13319 * 9 7 6 28 28 O 1.34007 * 125.57535 * 0.02562 * 3 2 1 29 29 H 1.09001 * 109.47360 * 59.99747 * 1 2 3 30 30 H 1.09001 * 109.47272 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47283 * 299.99517 * 1 2 3 32 32 H 1.07999 * 126.40750 * 359.97438 * 4 3 2 33 33 H 1.07993 * 126.66080 * 179.97438 * 5 4 3 34 34 H 1.08994 * 109.59485 * 246.15782 * 10 9 7 35 35 H 1.08999 * 109.58539 * 6.58470 * 10 9 7 36 36 H 1.08993 * 109.49929 * 174.58726 * 11 10 9 37 37 H 1.08997 * 109.49434 * 294.65528 * 11 10 9 38 38 H 1.09003 * 109.47050 * 54.99866 * 14 12 11 39 39 H 1.08999 * 109.47173 * 174.99952 * 14 12 11 40 40 H 0.96994 * 120.00040 * 0.02562 * 15 14 12 41 41 H 0.97002 * 120.00218 * 179.97438 * 19 18 16 42 42 H 1.08995 * 109.47472 * 60.00160 * 26 24 12 43 43 H 1.09005 * 109.47309 * 180.02562 * 26 24 12 44 44 H 1.09000 * 109.47171 * 299.99416 * 26 24 12 45 45 H 1.08994 * 109.58886 * 353.41748 * 27 9 7 46 46 H 1.09000 * 109.58640 * 113.84507 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2062 0.0000 4 6 3.3892 1.4092 0.0005 5 6 3.5984 2.7926 0.0009 6 6 2.3520 3.3810 0.0061 7 6 2.0793 4.8166 0.0134 8 8 2.9922 5.6106 -0.1248 9 7 0.8173 5.2620 0.1730 10 6 -0.2696 4.3297 0.5017 11 6 -0.9913 4.8358 1.7547 12 6 -1.4480 6.2788 1.5277 13 1 -2.1082 6.3186 0.6613 14 6 -2.1994 6.7761 2.7641 15 7 -3.4314 6.0012 2.9313 16 6 -4.2721 6.2694 3.9785 17 1 -4.0271 7.0524 4.6808 18 6 -5.4397 5.5356 4.1366 19 7 -5.7385 4.5817 3.2804 20 14 -6.5870 5.9018 5.5646 21 1 -7.0563 7.3077 5.4744 22 1 -7.7541 4.9852 5.5096 23 1 -5.8620 5.7032 6.8454 24 6 -0.2279 7.1689 1.2803 25 1 0.4448 7.1102 2.1359 26 6 -0.6829 8.6166 1.0860 27 6 0.5034 6.6900 0.0274 28 8 1.4263 2.3957 0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 4.1527 0.6454 0.0013 33 1 4.5513 3.3007 0.0017 34 1 -0.9726 4.2801 -0.3298 35 1 0.1437 3.3395 0.6930 36 1 -1.8588 4.2068 1.9540 37 1 -0.3115 4.7985 2.6060 38 1 -1.5702 6.6528 3.6456 39 1 -2.4472 7.8302 2.6391 40 1 -3.6513 5.2977 2.3007 41 1 -6.5543 4.0686 3.3910 42 1 -1.2049 8.9565 1.9804 43 1 0.1863 9.2502 0.9094 44 1 -1.3543 8.6746 0.2293 45 1 1.4265 7.2565 -0.0941 46 1 -0.1353 6.8368 -0.8436 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185359644.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:02 Heat of formation + Delta-G solvation = -61.411663 kcal Electronic energy + Delta-G solvation = -27983.708706 eV Core-core repulsion = 24068.244014 eV Total energy + Delta-G solvation = -3915.464692 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.90503 -41.26663 -39.60896 -39.17119 -36.64201 -35.14637 -34.24607 -33.50706 -32.06687 -30.82616 -28.66087 -28.33150 -27.31352 -25.62643 -24.22351 -23.31535 -23.02310 -22.60540 -21.38618 -20.70399 -19.55730 -19.15815 -18.42643 -18.15430 -17.35008 -16.78189 -16.49452 -16.31782 -15.94846 -15.68287 -15.56553 -15.42207 -15.20544 -14.69512 -14.48808 -14.31807 -14.17366 -14.11831 -14.01468 -13.50736 -13.16486 -13.03650 -12.95850 -12.90301 -12.76968 -12.66627 -12.50206 -12.23111 -12.00745 -11.89314 -11.66397 -11.59444 -11.25177 -11.20769 -11.07532 -10.86965 -9.84414 -9.13935 -8.96307 -7.94428 -5.21962 -0.07882 1.08183 1.29091 1.47599 1.49737 1.55851 1.80632 2.02755 2.21052 2.56481 3.38439 3.39656 3.66871 3.71291 3.76418 3.84018 3.95271 4.19752 4.20555 4.25623 4.26161 4.27498 4.42241 4.49641 4.56151 4.59490 4.66092 4.68624 4.73201 4.77512 4.83847 4.87113 4.96510 5.07850 5.09012 5.16107 5.22495 5.25919 5.32792 5.40010 5.47897 5.51644 5.59207 6.06616 6.20271 6.28435 6.87327 7.35281 8.11295 8.35836 9.28703 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.012573 B = 0.003419 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.455388 B = 8187.416725 C =10070.936683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.266 6.266 3 C 0.206 3.794 4 C -0.242 4.242 5 C -0.072 4.072 6 C -0.129 4.129 7 C 0.605 3.395 8 O -0.558 6.558 9 N -0.601 5.601 10 C 0.107 3.893 11 C -0.117 4.117 12 C -0.079 4.079 13 H 0.072 0.928 14 C 0.157 3.843 15 N -0.741 5.741 16 C -0.247 4.247 17 H 0.071 0.929 18 C -0.070 4.070 19 N -0.966 5.966 20 Si 0.969 3.031 21 H -0.279 1.279 22 H -0.294 1.294 23 H -0.280 1.280 24 C -0.089 4.089 25 H 0.065 0.935 26 C -0.143 4.143 27 C 0.121 3.879 28 O -0.185 6.185 29 H 0.069 0.931 30 H 0.138 0.862 31 H 0.062 0.938 32 H 0.187 0.813 33 H 0.180 0.820 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.009 0.991 39 H 0.029 0.971 40 H 0.375 0.625 41 H 0.251 0.749 42 H 0.056 0.944 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.093 0.907 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.789 -5.655 -10.196 20.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.180 6.180 3 C 0.109 3.891 4 C -0.262 4.262 5 C -0.092 4.092 6 C -0.179 4.179 7 C 0.395 3.605 8 O -0.440 6.440 9 N -0.332 5.332 10 C -0.014 4.014 11 C -0.155 4.155 12 C -0.097 4.097 13 H 0.090 0.910 14 C 0.031 3.969 15 N -0.384 5.384 16 C -0.379 4.379 17 H 0.089 0.911 18 C -0.263 4.263 19 N -0.617 5.617 20 Si 0.798 3.202 21 H -0.205 1.205 22 H -0.220 1.220 23 H -0.207 1.207 24 C -0.108 4.108 25 H 0.084 0.916 26 C -0.200 4.200 27 C -0.001 4.001 28 O -0.087 6.087 29 H 0.088 0.912 30 H 0.156 0.844 31 H 0.081 0.919 32 H 0.204 0.796 33 H 0.197 0.803 34 H 0.101 0.899 35 H 0.120 0.880 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.027 0.973 39 H 0.047 0.953 40 H 0.208 0.792 41 H 0.060 0.940 42 H 0.075 0.925 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.111 0.889 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 16.941 -5.266 -10.123 20.426 hybrid contribution -1.306 -0.274 0.785 1.548 sum 15.635 -5.540 -9.338 19.035 Atomic orbital electron populations 1.23488 0.74877 1.07007 1.03034 1.86407 1.24764 1.18174 1.88676 1.21382 0.90369 0.78774 0.98537 1.21091 0.92363 0.96930 1.15776 1.22245 0.97699 0.93069 0.96230 1.21737 0.87779 0.87000 1.21343 1.16651 0.82677 0.84654 0.76497 1.90844 1.44637 1.54838 1.53636 1.48072 1.07229 1.09616 1.68253 1.22153 0.88815 0.92919 0.97552 1.21807 0.99793 0.96853 0.97094 1.21234 0.96120 0.94458 0.97933 0.90996 1.20879 0.86596 0.94430 0.95017 1.42535 1.22260 1.41902 1.31747 1.19571 1.00548 1.13923 1.03853 0.91109 1.25474 1.00185 0.98977 1.01661 1.69784 1.26783 1.25684 1.39433 0.85278 0.78293 0.77221 0.79366 1.20529 1.21997 1.20659 1.21293 0.95712 0.96014 0.97822 0.91649 1.21793 1.01823 0.93969 1.02463 1.21726 1.01090 0.79268 0.97995 1.84181 1.36905 1.14389 1.73180 0.91212 0.84444 0.91880 0.79591 0.80307 0.89936 0.87995 0.91308 0.92731 0.97323 0.95304 0.79197 0.93989 0.92453 0.90954 0.91844 0.88851 0.89635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 10.74 113.37 1.22 1.34 16 2 O -0.27 -4.83 10.55 -64.43 -0.68 -5.51 16 3 C 0.21 4.25 7.86 67.32 0.53 4.78 16 4 C -0.24 -4.45 10.89 22.18 0.24 -4.21 16 5 C -0.07 -1.50 10.67 22.58 0.24 -1.26 16 6 C -0.13 -3.22 6.79 24.22 0.16 -3.06 16 7 C 0.60 17.08 7.63 86.29 0.66 17.74 16 8 O -0.56 -18.16 16.30 -4.58 -0.07 -18.23 16 9 N -0.60 -15.63 2.98 -825.02 -2.46 -18.08 16 10 C 0.11 2.69 6.10 86.37 0.53 3.21 16 11 C -0.12 -3.52 5.25 30.68 0.16 -3.36 16 12 C -0.08 -2.41 1.73 -10.77 -0.02 -2.42 16 13 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 14 C 0.16 6.15 5.41 86.38 0.47 6.62 16 15 N -0.74 -36.81 5.32 -343.45 -1.83 -38.64 16 16 C -0.25 -13.70 9.99 84.03 0.84 -12.86 16 17 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 18 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 19 N -0.97 -57.67 13.06 21.65 0.28 -57.39 16 20 Si 0.97 45.60 29.55 68.60 2.03 47.63 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 24 C -0.09 -2.25 2.40 -10.86 -0.03 -2.28 16 25 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 26 C -0.14 -3.20 8.82 71.98 0.63 -2.56 16 27 C 0.12 2.87 5.70 86.22 0.49 3.36 16 28 O -0.19 -4.26 6.74 13.44 0.09 -4.17 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.19 2.39 8.06 -2.91 -0.02 2.36 16 33 H 0.18 3.14 8.06 -2.91 -0.02 3.12 16 34 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.10 2.49 4.25 -19.73 -0.08 2.41 16 36 H 0.07 2.37 7.15 -2.39 -0.02 2.35 16 37 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.03 1.13 6.14 -2.39 -0.01 1.11 16 40 H 0.38 19.50 6.85 -92.71 -0.63 18.86 16 41 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 42 H 0.06 1.43 6.29 -2.39 -0.02 1.41 16 43 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 44 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.09 2.27 7.00 -2.39 -0.02 2.25 16 46 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -67.69 370.79 4.24 -63.45 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: 0.28 Total: 29.42 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: 6.59 Total: 1.53 kcal Atomic # 7 Polarization: -110.11 SS G_CDS: -4.00 Total: -114.11 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.66 Total: -27.91 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -67.69 4.24 -63.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185359644.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.038 kcal (2) G-P(sol) polarization free energy of solvation -67.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds