Wall clock time and date at job start Tue Mar 31 2020 16:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35366 * 116.99964 * 2 1 4 4 C 1.36097 * 125.57958 * 179.97438 * 3 2 1 5 5 C 1.39905 * 107.17826 * 180.02562 * 4 3 2 6 6 C 1.37825 * 106.67834 * 0.02562 * 5 4 3 7 7 C 1.46133 * 126.03176 * 179.97438 * 6 5 4 8 8 O 1.21771 * 120.00107 * 7.12736 * 7 6 5 9 9 N 1.34773 * 120.00014 * 187.12052 * 7 6 5 10 10 C 1.46931 * 120.62935 * 6.06515 * 9 7 6 11 11 C 1.53191 * 108.77631 * 233.57950 * 10 9 7 12 12 C 1.53033 * 109.31770 * 305.36891 * 11 10 9 13 13 H 1.09000 * 109.45949 * 301.34442 * 12 11 10 14 14 C 1.53001 * 109.46238 * 181.38440 * 12 11 10 15 15 N 1.46494 * 109.47280 * 65.00071 * 14 12 11 16 16 C 1.36931 * 120.00303 * 180.02562 * 15 14 12 17 17 H 1.08003 * 120.00035 * 359.97438 * 16 15 14 18 18 C 1.38817 * 120.00243 * 179.97438 * 16 15 14 19 19 N 1.31614 * 119.99676 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99941 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46979 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.46916 * 119.99869 * 20 18 16 23 23 H 1.48500 * 109.47047 * 239.99887 * 20 18 16 24 24 C 1.53040 * 109.53896 * 61.36157 * 12 11 10 25 25 H 1.09003 * 109.49672 * 58.61668 * 24 12 11 26 26 C 1.53000 * 109.49917 * 178.68428 * 24 12 11 27 27 C 1.46928 * 120.63276 * 185.78393 * 9 7 6 28 28 O 1.34010 * 125.57919 * 359.69492 * 3 2 1 29 29 H 1.09000 * 109.47051 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47054 * 300.00131 * 1 2 3 31 31 H 1.08999 * 109.46666 * 59.99697 * 1 2 3 32 32 H 1.07999 * 126.40722 * 0.03922 * 4 3 2 33 33 H 1.08006 * 126.66204 * 179.97438 * 5 4 3 34 34 H 1.08994 * 109.58744 * 353.37288 * 10 9 7 35 35 H 1.09008 * 109.58470 * 113.79568 * 10 9 7 36 36 H 1.09006 * 109.49083 * 65.31947 * 11 10 9 37 37 H 1.08997 * 109.49912 * 185.38111 * 11 10 9 38 38 H 1.08997 * 109.46765 * 185.00131 * 14 12 11 39 39 H 1.08995 * 109.46806 * 304.99910 * 14 12 11 40 40 H 0.97004 * 119.99606 * 359.97438 * 15 14 12 41 41 H 0.97005 * 119.99747 * 179.97438 * 19 18 16 42 42 H 1.09004 * 109.46714 * 60.00377 * 26 24 12 43 43 H 1.09005 * 109.47280 * 179.97438 * 26 24 12 44 44 H 1.08994 * 109.47437 * 300.00066 * 26 24 12 45 45 H 1.09001 * 109.58861 * 246.20477 * 27 9 7 46 46 H 1.09001 * 109.58207 * 6.62915 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2061 0.0000 4 6 3.3893 1.4092 0.0005 5 6 3.5985 2.7925 0.0009 6 6 2.3522 3.3810 0.0012 7 6 2.0795 4.8166 0.0022 8 8 2.9939 5.6102 -0.1280 9 7 0.8159 5.2624 0.1471 10 6 -0.2793 4.3269 0.4372 11 6 -1.3865 4.5263 -0.6026 12 6 -1.8052 5.9981 -0.6205 13 1 -2.1522 6.2889 0.3711 14 6 -2.9349 6.1945 -1.6334 15 7 -4.1218 5.4591 -1.1900 16 6 -5.2654 5.4869 -1.9426 17 1 -5.2925 6.0513 -2.8631 18 6 -6.3899 4.7897 -1.5227 19 7 -6.3567 4.1015 -0.4012 20 14 -7.9501 4.8282 -2.5491 21 1 -7.7293 5.6676 -3.7541 22 1 -8.3031 3.4471 -2.9652 23 1 -9.0585 5.4011 -1.7437 24 6 -0.6086 6.8659 -1.0167 25 1 -0.2459 6.5594 -1.9978 26 6 -1.0365 8.3340 -1.0661 27 6 0.5083 6.6939 0.0241 28 8 1.4264 2.3956 -0.0058 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 4.1528 0.6453 0.0004 33 1 4.5515 3.3006 0.0017 34 1 0.0911 3.3032 0.3850 35 1 -0.6743 4.5244 1.4338 36 1 -1.0161 4.2414 -1.5875 37 1 -2.2448 3.9064 -0.3435 38 1 -3.1728 7.2553 -1.7112 39 1 -2.6187 5.8206 -2.6072 40 1 -4.0973 4.9519 -0.3635 41 1 -7.1426 3.6146 -0.1076 42 1 -1.3979 8.6403 -0.0844 43 1 -0.1838 8.9518 -1.3479 44 1 -1.8325 8.4560 -1.8007 45 1 0.1763 7.0805 0.9877 46 1 1.3986 7.2323 -0.3009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185359651.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:06 Heat of formation + Delta-G solvation = -39.741713 kcal Electronic energy + Delta-G solvation = -28106.645087 eV Core-core repulsion = 24192.120075 eV Total energy + Delta-G solvation = -3914.525013 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.02999 -40.14697 -38.77435 -37.99545 -35.11305 -33.76592 -33.28732 -32.02149 -30.37980 -29.91161 -27.78095 -26.94197 -26.31685 -23.98031 -22.86787 -22.33452 -22.10514 -21.25618 -20.38675 -19.52204 -18.71946 -17.52067 -17.22801 -17.05962 -16.25650 -15.59102 -15.49241 -14.94692 -14.81328 -14.67644 -14.28079 -14.07746 -13.63768 -13.52488 -13.44578 -13.27918 -13.23751 -12.76988 -12.60589 -12.41757 -12.20707 -11.92313 -11.81908 -11.80473 -11.53209 -11.03082 -10.91091 -10.85559 -10.43637 -10.40399 -10.26061 -10.21238 -10.08729 -9.91027 -9.66862 -8.89975 -8.74109 -8.24554 -6.93625 -5.80506 -3.08129 0.86862 1.94194 2.15490 2.76190 3.01977 3.09593 3.40189 3.46526 3.48252 4.34725 4.55563 4.58401 4.78816 4.86037 4.88691 4.92035 4.97198 5.07937 5.11068 5.26861 5.32847 5.36857 5.47795 5.54224 5.59461 5.62255 5.68383 5.77449 5.84674 5.90746 5.96237 6.03359 6.08292 6.16439 6.24663 6.27829 6.32673 6.45222 6.50428 6.59092 6.81006 6.90683 6.91893 7.26351 7.67825 7.94878 8.39017 9.50367 10.08624 10.43297 11.42599 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.012400 B = 0.003582 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.490946 B = 7815.858616 C = 9791.214545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.264 6.264 3 C 0.209 3.791 4 C -0.245 4.245 5 C -0.081 4.081 6 C -0.101 4.101 7 C 0.606 3.394 8 O -0.531 6.531 9 N -0.600 5.600 10 C 0.092 3.908 11 C -0.123 4.123 12 C -0.090 4.090 13 H 0.073 0.927 14 C 0.157 3.843 15 N -0.732 5.732 16 C -0.236 4.236 17 H 0.070 0.930 18 C -0.014 4.014 19 N -0.934 5.934 20 Si 0.905 3.095 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.098 4.098 25 H 0.074 0.926 26 C -0.147 4.147 27 C 0.119 3.881 28 O -0.177 6.177 29 H 0.112 0.888 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.162 0.838 33 H 0.166 0.834 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.025 0.975 39 H 0.016 0.984 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.262 -3.747 3.045 18.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.178 6.178 3 C 0.113 3.887 4 C -0.265 4.265 5 C -0.102 4.102 6 C -0.151 4.151 7 C 0.395 3.605 8 O -0.411 6.411 9 N -0.331 5.331 10 C -0.030 4.030 11 C -0.161 4.161 12 C -0.108 4.108 13 H 0.091 0.909 14 C 0.029 3.971 15 N -0.376 5.376 16 C -0.368 4.368 17 H 0.088 0.912 18 C -0.210 4.210 19 N -0.584 5.584 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.117 4.117 25 H 0.092 0.908 26 C -0.204 4.204 27 C -0.003 4.003 28 O -0.079 6.079 29 H 0.130 0.870 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.179 0.821 33 H 0.184 0.816 34 H 0.120 0.880 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.043 0.957 39 H 0.034 0.966 40 H 0.216 0.784 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 18.364 -3.406 2.839 18.892 hybrid contribution -1.298 -0.407 -0.256 1.384 sum 17.067 -3.813 2.584 17.677 Atomic orbital electron populations 1.23268 0.75989 1.05323 1.03231 1.86388 1.23557 1.18913 1.88900 1.21136 0.89868 0.78864 0.98832 1.20750 0.92091 0.96827 1.16811 1.21946 0.97662 0.92553 0.98010 1.21918 0.87007 0.87347 1.18798 1.16503 0.82948 0.84104 0.76956 1.90869 1.44067 1.54005 1.52124 1.48025 1.06816 1.08993 1.69284 1.22397 0.87570 0.93590 0.99417 1.21912 0.97769 0.97753 0.98677 1.21354 0.94784 0.93965 1.00743 0.90906 1.20753 0.86497 0.95408 0.94427 1.42381 1.08761 1.59072 1.27401 1.19282 0.89698 1.24800 1.02993 0.91225 1.24712 0.98190 1.00413 0.97694 1.69660 1.29373 1.36549 1.22780 0.86139 0.83687 0.77181 0.79341 1.20579 1.21909 1.21883 1.21554 0.94918 0.96325 0.98931 0.90800 1.21830 1.01416 0.94513 1.02678 1.21873 0.99175 0.79735 0.99472 1.84244 1.36406 1.14141 1.73064 0.86970 0.91483 0.91319 0.82062 0.81644 0.88046 0.90969 0.91815 0.89315 0.95716 0.96582 0.78358 0.93631 0.92451 0.92904 0.91253 0.91124 0.88974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 10.74 101.05 1.09 1.21 16 2 O -0.26 -2.69 10.55 -41.02 -0.43 -3.12 16 3 C 0.21 2.35 7.86 29.96 0.24 2.59 16 4 C -0.24 -2.51 10.89 -39.73 -0.43 -2.95 16 5 C -0.08 -0.91 10.67 -39.11 -0.42 -1.32 16 6 C -0.10 -1.31 6.85 -36.57 -0.25 -1.56 16 7 C 0.61 8.74 7.64 -13.10 -0.10 8.64 16 8 O -0.53 -8.76 16.32 5.13 0.08 -8.67 16 9 N -0.60 -8.04 2.97 -174.23 -0.52 -8.55 16 10 C 0.09 1.17 6.32 -3.71 -0.02 1.15 16 11 C -0.12 -1.81 5.25 -26.62 -0.14 -1.95 16 12 C -0.09 -1.37 1.73 -90.58 -0.16 -1.53 16 13 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 14 C 0.16 3.03 5.41 -4.04 -0.02 3.01 16 15 N -0.73 -17.84 5.32 -59.91 -0.32 -18.16 16 16 C -0.24 -6.49 9.99 -15.06 -0.15 -6.64 16 17 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 18 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 19 N -0.93 -27.50 13.06 55.49 0.72 -26.78 16 20 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 C -0.10 -1.27 2.43 -90.27 -0.22 -1.49 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 26 C -0.15 -1.74 8.82 37.16 0.33 -1.42 16 27 C 0.12 1.49 5.73 -3.48 -0.02 1.47 16 28 O -0.18 -2.16 6.62 -19.28 -0.13 -2.29 16 29 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.17 1.58 8.06 -52.48 -0.42 1.15 16 34 H 0.10 1.26 3.79 -55.08 -0.21 1.05 16 35 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.09 1.47 7.15 -51.93 -0.37 1.10 16 38 H 0.03 0.49 6.14 -51.93 -0.32 0.17 16 39 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.38 9.69 6.85 -40.82 -0.28 9.41 16 41 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.89 6.29 -51.93 -0.33 0.57 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.09 1.18 7.04 -51.93 -0.37 0.81 16 LS Contribution 370.60 15.07 5.58 5.58 Total: -1.00 -31.74 370.60 -7.32 -39.06 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -6.91 Total: 7.16 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -0.38 Total: -1.29 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: -0.11 Total: -53.49 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.48 Total: -14.09 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.74 -7.32 -39.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185359651.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.679 kcal (2) G-P(sol) polarization free energy of solvation -31.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds