Wall clock time and date at job start Tue Mar 31 2020 16:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35366 * 116.99964 * 2 1 4 4 C 1.36097 * 125.57958 * 179.97438 * 3 2 1 5 5 C 1.39905 * 107.17826 * 180.02562 * 4 3 2 6 6 C 1.37825 * 106.67834 * 0.02562 * 5 4 3 7 7 C 1.46133 * 126.03176 * 179.97438 * 6 5 4 8 8 O 1.21771 * 120.00107 * 7.12736 * 7 6 5 9 9 N 1.34773 * 120.00014 * 187.12052 * 7 6 5 10 10 C 1.46931 * 120.62935 * 6.06515 * 9 7 6 11 11 C 1.53191 * 108.77631 * 233.57950 * 10 9 7 12 12 C 1.53033 * 109.31770 * 305.36891 * 11 10 9 13 13 H 1.09000 * 109.45949 * 301.34442 * 12 11 10 14 14 C 1.53001 * 109.46238 * 181.38440 * 12 11 10 15 15 N 1.46494 * 109.47280 * 65.00071 * 14 12 11 16 16 C 1.36931 * 120.00303 * 180.02562 * 15 14 12 17 17 H 1.08003 * 120.00035 * 359.97438 * 16 15 14 18 18 C 1.38817 * 120.00243 * 179.97438 * 16 15 14 19 19 N 1.31614 * 119.99676 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99941 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46979 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.46916 * 119.99869 * 20 18 16 23 23 H 1.48500 * 109.47047 * 239.99887 * 20 18 16 24 24 C 1.53040 * 109.53896 * 61.36157 * 12 11 10 25 25 H 1.09003 * 109.49672 * 58.61668 * 24 12 11 26 26 C 1.53000 * 109.49917 * 178.68428 * 24 12 11 27 27 C 1.46928 * 120.63276 * 185.78393 * 9 7 6 28 28 O 1.34010 * 125.57919 * 359.69492 * 3 2 1 29 29 H 1.09000 * 109.47051 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47054 * 300.00131 * 1 2 3 31 31 H 1.08999 * 109.46666 * 59.99697 * 1 2 3 32 32 H 1.07999 * 126.40722 * 0.03922 * 4 3 2 33 33 H 1.08006 * 126.66204 * 179.97438 * 5 4 3 34 34 H 1.08994 * 109.58744 * 353.37288 * 10 9 7 35 35 H 1.09008 * 109.58470 * 113.79568 * 10 9 7 36 36 H 1.09006 * 109.49083 * 65.31947 * 11 10 9 37 37 H 1.08997 * 109.49912 * 185.38111 * 11 10 9 38 38 H 1.08997 * 109.46765 * 185.00131 * 14 12 11 39 39 H 1.08995 * 109.46806 * 304.99910 * 14 12 11 40 40 H 0.97004 * 119.99606 * 359.97438 * 15 14 12 41 41 H 0.97005 * 119.99747 * 179.97438 * 19 18 16 42 42 H 1.09004 * 109.46714 * 60.00377 * 26 24 12 43 43 H 1.09005 * 109.47280 * 179.97438 * 26 24 12 44 44 H 1.08994 * 109.47437 * 300.00066 * 26 24 12 45 45 H 1.09001 * 109.58861 * 246.20477 * 27 9 7 46 46 H 1.09001 * 109.58207 * 6.62915 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2061 0.0000 4 6 3.3893 1.4092 0.0005 5 6 3.5985 2.7925 0.0009 6 6 2.3522 3.3810 0.0012 7 6 2.0795 4.8166 0.0022 8 8 2.9939 5.6102 -0.1280 9 7 0.8159 5.2624 0.1471 10 6 -0.2793 4.3269 0.4372 11 6 -1.3865 4.5263 -0.6026 12 6 -1.8052 5.9981 -0.6205 13 1 -2.1522 6.2889 0.3711 14 6 -2.9349 6.1945 -1.6334 15 7 -4.1218 5.4591 -1.1900 16 6 -5.2654 5.4869 -1.9426 17 1 -5.2925 6.0513 -2.8631 18 6 -6.3899 4.7897 -1.5227 19 7 -6.3567 4.1015 -0.4012 20 14 -7.9501 4.8282 -2.5491 21 1 -7.7293 5.6676 -3.7541 22 1 -8.3031 3.4471 -2.9652 23 1 -9.0585 5.4011 -1.7437 24 6 -0.6086 6.8659 -1.0167 25 1 -0.2459 6.5594 -1.9978 26 6 -1.0365 8.3340 -1.0661 27 6 0.5083 6.6939 0.0241 28 8 1.4264 2.3956 -0.0058 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 4.1528 0.6453 0.0004 33 1 4.5515 3.3006 0.0017 34 1 0.0911 3.3032 0.3850 35 1 -0.6743 4.5244 1.4338 36 1 -1.0161 4.2414 -1.5875 37 1 -2.2448 3.9064 -0.3435 38 1 -3.1728 7.2553 -1.7112 39 1 -2.6187 5.8206 -2.6072 40 1 -4.0973 4.9519 -0.3635 41 1 -7.1426 3.6146 -0.1076 42 1 -1.3979 8.6403 -0.0844 43 1 -0.1838 8.9518 -1.3479 44 1 -1.8325 8.4560 -1.8007 45 1 0.1763 7.0805 0.9877 46 1 1.3986 7.2323 -0.3009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185359651.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:05 Heat of formation + Delta-G solvation = -58.786468 kcal Electronic energy + Delta-G solvation = -28107.470930 eV Core-core repulsion = 24192.120075 eV Total energy + Delta-G solvation = -3915.350855 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.91457 -41.24441 -39.60668 -39.17297 -36.64686 -35.14358 -34.24938 -33.48322 -32.06128 -30.82768 -28.66003 -28.33710 -27.30604 -25.63512 -24.23425 -23.29866 -23.03693 -22.60454 -21.42026 -20.69652 -19.58664 -19.14820 -18.44973 -18.09947 -17.34402 -16.76731 -16.47560 -16.31671 -15.91591 -15.75075 -15.61211 -15.43903 -15.22831 -14.74456 -14.48025 -14.30944 -14.18505 -14.12537 -14.00439 -13.43312 -13.16323 -13.05005 -12.95966 -12.89559 -12.79303 -12.65315 -12.51318 -12.15484 -11.99261 -11.90250 -11.66633 -11.59072 -11.23009 -11.20992 -11.09061 -10.88542 -9.84559 -9.13635 -8.96418 -7.94911 -5.22266 -0.07951 1.06168 1.30355 1.47262 1.47888 1.57564 1.82568 2.02576 2.19372 2.56011 3.37168 3.39187 3.67014 3.71680 3.76151 3.83735 3.94854 4.19026 4.19846 4.23979 4.25971 4.27290 4.43075 4.49102 4.56760 4.60059 4.65713 4.68219 4.72610 4.78083 4.84426 4.90352 4.96820 5.07978 5.08928 5.15587 5.22397 5.26648 5.33129 5.39947 5.47991 5.51926 5.59368 6.07415 6.21054 6.28250 6.87531 7.35105 8.11001 8.35462 9.28609 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.012400 B = 0.003582 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.490946 B = 7815.858616 C = 9791.214545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.266 6.266 3 C 0.204 3.796 4 C -0.241 4.241 5 C -0.070 4.070 6 C -0.130 4.130 7 C 0.604 3.396 8 O -0.558 6.558 9 N -0.601 5.601 10 C 0.100 3.900 11 C -0.114 4.114 12 C -0.080 4.080 13 H 0.071 0.929 14 C 0.157 3.843 15 N -0.741 5.741 16 C -0.244 4.244 17 H 0.071 0.929 18 C -0.071 4.071 19 N -0.966 5.966 20 Si 0.968 3.032 21 H -0.269 1.269 22 H -0.293 1.293 23 H -0.293 1.293 24 C -0.088 4.088 25 H 0.066 0.934 26 C -0.143 4.143 27 C 0.121 3.879 28 O -0.185 6.185 29 H 0.138 0.862 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.187 0.813 33 H 0.181 0.819 34 H 0.109 0.891 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.068 0.932 38 H 0.029 0.971 39 H 0.009 0.991 40 H 0.375 0.625 41 H 0.251 0.749 42 H 0.062 0.938 43 H 0.072 0.928 44 H 0.057 0.943 45 H 0.085 0.915 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.146 -3.890 2.979 19.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.180 6.180 3 C 0.107 3.893 4 C -0.261 4.261 5 C -0.091 4.091 6 C -0.180 4.180 7 C 0.395 3.605 8 O -0.440 6.440 9 N -0.331 5.331 10 C -0.021 4.021 11 C -0.153 4.153 12 C -0.098 4.098 13 H 0.089 0.911 14 C 0.031 3.969 15 N -0.384 5.384 16 C -0.376 4.376 17 H 0.089 0.911 18 C -0.263 4.263 19 N -0.617 5.617 20 Si 0.798 3.202 21 H -0.194 1.194 22 H -0.220 1.220 23 H -0.220 1.220 24 C -0.108 4.108 25 H 0.085 0.915 26 C -0.201 4.201 27 C 0.000 4.000 28 O -0.087 6.087 29 H 0.156 0.844 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.204 0.796 33 H 0.198 0.802 34 H 0.126 0.874 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.047 0.953 39 H 0.027 0.973 40 H 0.208 0.792 41 H 0.060 0.940 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.103 0.897 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 19.260 -3.530 2.754 19.774 hybrid contribution -1.535 -0.415 -0.264 1.611 sum 17.726 -3.945 2.491 18.329 Atomic orbital electron populations 1.23473 0.74939 1.06977 1.02962 1.86398 1.24620 1.18310 1.88664 1.21473 0.90451 0.78852 0.98490 1.21092 0.92253 0.96969 1.15765 1.22246 0.97671 0.93009 0.96136 1.21782 0.87809 0.86995 1.21373 1.16664 0.82785 0.84646 0.76419 1.90842 1.44690 1.54870 1.53552 1.48079 1.06713 1.09353 1.68997 1.22319 0.86722 0.94078 0.99003 1.21771 0.97667 0.96963 0.98885 1.21242 0.94352 0.94905 0.99341 0.91082 1.20873 0.86162 0.94718 0.95133 1.42547 1.09521 1.59449 1.26914 1.19633 0.90768 1.24068 1.03102 0.91096 1.25465 1.01154 1.00724 0.98990 1.69797 1.29951 1.37620 1.24319 0.85149 0.79892 0.77008 0.78174 1.19379 1.21992 1.22040 1.21455 0.93923 0.96659 0.98731 0.91538 1.21799 1.01820 0.93779 1.02694 1.21904 0.98786 0.79482 0.99860 1.84169 1.36615 1.14442 1.73429 0.84441 0.91308 0.92034 0.79561 0.80191 0.87396 0.89965 0.92699 0.91335 0.95345 0.97269 0.79197 0.94011 0.91891 0.90948 0.92434 0.89727 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 10.74 113.37 1.22 1.37 16 2 O -0.27 -5.05 10.55 -64.35 -0.68 -5.73 16 3 C 0.20 4.31 7.86 67.32 0.53 4.84 16 4 C -0.24 -4.46 10.89 22.18 0.24 -4.22 16 5 C -0.07 -1.46 10.67 22.58 0.24 -1.22 16 6 C -0.13 -3.27 6.85 24.22 0.17 -3.10 16 7 C 0.60 17.06 7.64 86.29 0.66 17.72 16 8 O -0.56 -18.05 16.32 -4.57 -0.07 -18.13 16 9 N -0.60 -15.62 2.97 -823.33 -2.44 -18.06 16 10 C 0.10 2.51 6.32 86.36 0.55 3.05 16 11 C -0.11 -3.40 5.25 30.67 0.16 -3.24 16 12 C -0.08 -2.42 1.73 -10.77 -0.02 -2.44 16 13 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 14 C 0.16 6.11 5.41 86.38 0.47 6.58 16 15 N -0.74 -36.53 5.32 -343.47 -1.83 -38.36 16 16 C -0.24 -13.42 9.99 84.04 0.84 -12.58 16 17 H 0.07 3.81 7.83 -2.91 -0.02 3.78 16 18 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 19 N -0.97 -57.43 13.06 21.65 0.28 -57.15 16 20 Si 0.97 45.43 29.55 68.60 2.03 47.46 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 24 C -0.09 -2.21 2.43 -10.57 -0.03 -2.24 16 25 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 26 C -0.14 -3.19 8.82 71.98 0.63 -2.56 16 27 C 0.12 2.88 5.73 86.51 0.50 3.38 16 28 O -0.18 -4.37 6.62 13.44 0.09 -4.29 16 29 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.19 2.40 8.06 -2.91 -0.02 2.37 16 33 H 0.18 3.10 8.06 -2.91 -0.02 3.08 16 34 H 0.11 2.63 3.79 -52.16 -0.20 2.44 16 35 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.07 2.33 7.15 -2.39 -0.02 2.31 16 38 H 0.03 1.11 6.14 -2.39 -0.01 1.09 16 39 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.38 19.38 6.85 -92.71 -0.63 18.75 16 41 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 42 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 43 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 44 H 0.06 1.42 6.29 -2.39 -0.02 1.40 16 45 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.09 2.26 7.04 -2.39 -0.02 2.24 16 Total: -1.00 -67.16 370.60 4.17 -62.99 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 0.17 Total: 29.45 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 6.62 Total: 1.82 kcal Atomic # 7 Polarization: -109.59 SS G_CDS: -3.99 Total: -113.57 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.66 Total: -28.15 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -67.16 4.17 -62.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185359651.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.206 kcal (2) G-P(sol) polarization free energy of solvation -67.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds