Wall clock time and date at job start Tue Mar 31 2020 16:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35371 * 116.99940 * 2 1 4 4 C 1.36096 * 125.58017 * 180.29628 * 3 2 1 5 5 C 1.39914 * 107.17663 * 180.15710 * 4 3 2 6 6 C 1.37832 * 106.67423 * 359.57291 * 5 4 3 7 7 C 1.46131 * 126.02513 * 180.28180 * 6 5 4 8 8 O 1.21766 * 120.00079 * 7.57487 * 7 6 5 9 9 N 1.34777 * 119.99538 * 187.56865 * 7 6 5 10 10 C 1.46931 * 120.63230 * 7.18110 * 9 7 6 11 11 C 1.53625 * 108.54281 * 126.36595 * 10 9 7 12 12 C 1.53040 * 109.24211 * 54.85788 * 11 10 9 13 13 H 1.08990 * 109.46328 * 58.52892 * 12 11 10 14 14 C 1.53000 * 109.44924 * 178.50121 * 12 11 10 15 15 N 1.46508 * 109.46837 * 295.05969 * 14 12 11 16 16 C 1.36934 * 120.00176 * 180.02562 * 15 14 12 17 17 H 1.07995 * 119.99734 * 359.97438 * 16 15 14 18 18 C 1.38808 * 120.00127 * 179.97438 * 16 15 14 19 19 N 1.31617 * 120.00001 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00078 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46868 * 60.00415 * 20 18 16 22 22 H 1.48501 * 109.47191 * 179.97438 * 20 18 16 23 23 H 1.48491 * 109.47261 * 300.00105 * 20 18 16 24 24 C 1.53043 * 109.53543 * 298.50731 * 12 11 10 25 25 H 1.09005 * 109.49566 * 181.31503 * 24 12 11 26 26 C 1.53000 * 109.50235 * 301.41712 * 24 12 11 27 27 C 1.46923 * 120.62829 * 187.45600 * 9 7 6 28 28 O 1.34012 * 125.57690 * 359.97438 * 3 2 1 29 29 H 1.08994 * 109.47648 * 60.00225 * 1 2 3 30 30 H 1.09003 * 109.47278 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47369 * 300.00065 * 1 2 3 32 32 H 1.08004 * 126.41001 * 359.97438 * 4 3 2 33 33 H 1.07997 * 126.65923 * 179.84077 * 5 4 3 34 34 H 1.08993 * 109.58576 * 246.20027 * 10 9 7 35 35 H 1.09006 * 109.58321 * 6.62414 * 10 9 7 36 36 H 1.09006 * 109.63084 * 294.86601 * 11 10 9 37 37 H 1.09002 * 109.45837 * 174.74476 * 11 10 9 38 38 H 1.09000 * 109.47445 * 55.05512 * 14 12 11 39 39 H 1.09000 * 109.47195 * 175.06505 * 14 12 11 40 40 H 0.96999 * 119.99435 * 359.97438 * 15 14 12 41 41 H 0.97002 * 120.00056 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.47296 * 179.84218 * 26 24 12 43 43 H 1.08999 * 109.46546 * 299.83737 * 26 24 12 44 44 H 1.08995 * 109.47133 * 59.83629 * 26 24 12 45 45 H 1.08993 * 109.59233 * 353.37957 * 27 9 7 46 46 H 1.09000 * 109.58489 * 113.80360 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0435 1.2062 0.0000 4 6 3.3892 1.4092 -0.0057 5 6 3.5984 2.7926 0.0002 6 6 2.3519 3.3811 -0.0004 7 6 2.0793 4.8167 -0.0012 8 8 2.9927 5.6098 -0.1404 9 7 0.8168 5.2628 0.1520 10 6 -0.2722 4.3314 0.4769 11 6 -0.9975 4.8456 1.7297 12 6 -1.4537 6.2870 1.4925 13 1 -2.1107 6.3216 0.6236 14 6 -2.2094 6.7913 2.7235 15 7 -3.4411 6.0161 2.8918 16 6 -4.2859 6.2905 3.9340 17 1 -4.0439 7.0782 4.6321 18 6 -5.4531 5.5564 4.0932 19 7 -5.7477 4.5961 3.2426 20 14 -6.6051 5.9303 5.5153 21 1 -7.0759 7.3351 5.4147 22 1 -7.7717 5.0129 5.4617 23 1 -5.8841 5.7405 6.7994 24 6 -0.2328 7.1759 1.2443 25 1 -0.5567 8.2065 1.0986 26 6 0.7071 7.1008 2.4492 27 6 0.5022 6.6890 -0.0086 28 8 1.4263 2.3957 -0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 4.1528 0.6454 -0.0106 33 1 4.5514 3.3007 0.0004 34 1 -0.9708 4.2806 -0.3581 35 1 0.1400 3.3413 0.6720 36 1 -0.3206 4.8140 2.5836 37 1 -1.8655 4.2176 1.9302 38 1 -1.5829 6.6743 3.6077 39 1 -2.4581 7.8443 2.5910 40 1 -3.6585 5.3089 2.2645 41 1 -6.5636 4.0833 3.3536 42 1 1.5777 7.7318 2.2708 43 1 0.1838 7.4474 3.3403 44 1 1.0293 6.0698 2.5950 45 1 1.4251 7.2550 -0.1339 46 1 -0.1347 6.8265 -0.8824 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185359652.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:09 Heat of formation + Delta-G solvation = -39.106301 kcal Electronic energy + Delta-G solvation = -28210.586396 eV Core-core repulsion = 24296.088937 eV Total energy + Delta-G solvation = -3914.497459 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.03416 -40.26819 -38.81593 -38.01731 -35.05605 -33.67084 -33.20913 -31.81953 -30.35520 -29.86749 -27.77616 -27.05317 -26.37125 -23.89357 -23.09913 -22.72480 -22.18031 -21.25478 -20.37222 -18.99151 -18.39100 -17.62289 -17.33183 -16.96767 -16.17207 -15.64666 -15.58328 -15.08499 -14.79293 -14.46899 -14.31360 -13.97376 -13.78760 -13.64277 -13.46668 -13.26858 -13.16096 -12.91206 -12.51184 -12.45532 -12.29417 -12.11128 -11.82947 -11.58587 -11.33418 -11.04725 -10.94163 -10.77862 -10.43349 -10.35363 -10.26376 -10.21257 -10.05692 -9.90471 -9.65184 -8.87493 -8.72666 -8.25502 -6.92761 -5.78988 -3.06723 0.86581 1.94627 2.13866 2.75674 2.99941 3.12010 3.42421 3.46900 3.47706 4.35930 4.56944 4.57658 4.74361 4.83242 4.87285 4.94580 5.00087 5.05946 5.13863 5.23712 5.29091 5.36200 5.51981 5.57161 5.59565 5.60829 5.71031 5.78434 5.84904 5.87531 6.04330 6.06615 6.08386 6.17498 6.24105 6.29482 6.37952 6.46344 6.51562 6.64252 6.79968 6.87856 6.93241 7.27554 7.68103 7.96231 8.40606 9.51729 10.10010 10.44718 11.44010 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.013450 B = 0.003417 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.222102 B = 8192.317929 C = 9856.367530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.264 6.264 3 C 0.209 3.791 4 C -0.244 4.244 5 C -0.082 4.082 6 C -0.099 4.099 7 C 0.606 3.394 8 O -0.530 6.530 9 N -0.597 5.597 10 C 0.097 3.903 11 C -0.125 4.125 12 C -0.089 4.089 13 H 0.072 0.928 14 C 0.158 3.842 15 N -0.732 5.732 16 C -0.238 4.238 17 H 0.069 0.931 18 C -0.014 4.014 19 N -0.935 5.935 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.099 4.099 25 H 0.083 0.917 26 C -0.145 4.145 27 C 0.118 3.882 28 O -0.179 6.179 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.068 0.932 32 H 0.162 0.838 33 H 0.166 0.834 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.022 0.978 39 H 0.018 0.982 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.049 0.951 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.093 0.907 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.530 -5.946 -9.390 19.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.177 6.177 3 C 0.113 3.887 4 C -0.264 4.264 5 C -0.103 4.103 6 C -0.149 4.149 7 C 0.395 3.605 8 O -0.409 6.409 9 N -0.329 5.329 10 C -0.025 4.025 11 C -0.164 4.164 12 C -0.108 4.108 13 H 0.090 0.910 14 C 0.031 3.969 15 N -0.376 5.376 16 C -0.369 4.369 17 H 0.087 0.913 18 C -0.210 4.210 19 N -0.584 5.584 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.118 4.118 25 H 0.102 0.898 26 C -0.202 4.202 27 C -0.004 4.004 28 O -0.080 6.080 29 H 0.084 0.916 30 H 0.130 0.870 31 H 0.087 0.913 32 H 0.179 0.821 33 H 0.184 0.816 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.040 0.960 39 H 0.036 0.964 40 H 0.216 0.784 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.111 0.889 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.667 -5.575 -9.314 19.890 hybrid contribution -1.157 -0.246 0.626 1.339 sum 15.509 -5.821 -8.689 18.706 Atomic orbital electron populations 1.23248 0.76154 1.05251 1.03109 1.86393 1.23461 1.18903 1.88972 1.21055 0.89813 0.78746 0.99136 1.20759 0.92102 0.96849 1.16647 1.21954 0.97706 0.92544 0.98086 1.21933 0.86965 0.87398 1.18633 1.16470 0.82942 0.84022 0.77073 1.90868 1.43994 1.53953 1.52094 1.47974 1.07154 1.09289 1.68445 1.22342 0.88872 0.92815 0.98433 1.22046 1.00694 0.97236 0.96375 1.21317 0.95380 0.94122 0.99964 0.91007 1.20716 0.88077 0.94346 0.93776 1.42373 1.21040 1.41126 1.33087 1.19191 1.00024 1.14006 1.03700 0.91330 1.24707 0.98511 0.98653 0.99082 1.69639 1.26476 1.24310 1.38000 0.86278 0.80485 0.77367 0.82134 1.21301 1.21702 1.21305 1.21481 0.95594 0.99912 0.94823 0.89831 1.21858 0.98594 1.01862 0.97890 1.21764 1.00973 0.79928 0.97728 1.84250 1.36793 1.14139 1.72867 0.91636 0.87022 0.91305 0.82053 0.81641 0.91084 0.88586 0.91319 0.89433 0.96046 0.96427 0.78352 0.93535 0.93151 0.91930 0.92674 0.88865 0.91212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 10.74 101.05 1.09 1.21 16 2 O -0.26 -2.59 10.55 -41.04 -0.43 -3.02 16 3 C 0.21 2.30 7.86 29.96 0.24 2.53 16 4 C -0.24 -2.47 10.89 -39.72 -0.43 -2.90 16 5 C -0.08 -0.91 10.67 -39.10 -0.42 -1.33 16 6 C -0.10 -1.27 6.79 -36.56 -0.25 -1.52 16 7 C 0.61 8.59 7.63 -13.09 -0.10 8.49 16 8 O -0.53 -8.61 16.31 5.13 0.08 -8.53 16 9 N -0.60 -7.81 2.41 -174.24 -0.42 -8.23 16 10 C 0.10 1.23 6.13 -3.48 -0.02 1.21 16 11 C -0.13 -1.85 4.92 -26.39 -0.13 -1.98 16 12 C -0.09 -1.36 1.96 -90.58 -0.18 -1.54 16 13 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 14 C 0.16 3.08 5.19 -4.04 -0.02 3.06 16 15 N -0.73 -17.97 5.32 -59.91 -0.32 -18.28 16 16 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 17 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 19 N -0.94 -27.65 13.06 55.49 0.72 -26.92 16 20 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 C -0.10 -1.28 2.72 -90.50 -0.25 -1.52 16 25 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 26 C -0.14 -1.93 8.38 37.16 0.31 -1.62 16 27 C 0.12 1.45 5.84 -3.71 -0.02 1.43 16 28 O -0.18 -2.13 6.73 -19.27 -0.13 -2.26 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.16 1.26 8.06 -52.48 -0.42 0.84 16 33 H 0.17 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.10 1.18 4.23 -53.13 -0.22 0.96 16 36 H 0.07 1.06 6.33 -51.93 -0.33 0.73 16 37 H 0.09 1.46 7.15 -51.93 -0.37 1.09 16 38 H 0.02 0.43 6.74 -51.93 -0.35 0.08 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.38 9.74 6.84 -40.82 -0.28 9.46 16 41 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.86 6.59 -51.93 -0.34 0.52 16 44 H 0.05 0.78 5.97 -51.93 -0.31 0.47 16 45 H 0.09 1.17 7.00 -51.93 -0.36 0.81 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 366.82 15.07 5.53 5.53 Total: -1.00 -31.86 366.82 -7.18 -39.04 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -6.77 Total: 7.21 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -0.43 Total: -1.71 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.01 Total: -53.43 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.48 Total: -13.81 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.86 -7.18 -39.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185359652.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.065 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds