Wall clock time and date at job start Tue Mar 31 2020 16:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35371 * 116.99940 * 2 1 4 4 C 1.36096 * 125.58017 * 180.29628 * 3 2 1 5 5 C 1.39914 * 107.17663 * 180.15710 * 4 3 2 6 6 C 1.37832 * 106.67423 * 359.57291 * 5 4 3 7 7 C 1.46131 * 126.02513 * 180.28180 * 6 5 4 8 8 O 1.21766 * 120.00079 * 7.57487 * 7 6 5 9 9 N 1.34777 * 119.99538 * 187.56865 * 7 6 5 10 10 C 1.46931 * 120.63230 * 7.18110 * 9 7 6 11 11 C 1.53625 * 108.54281 * 126.36595 * 10 9 7 12 12 C 1.53040 * 109.24211 * 54.85788 * 11 10 9 13 13 H 1.08990 * 109.46328 * 58.52892 * 12 11 10 14 14 C 1.53000 * 109.44924 * 178.50121 * 12 11 10 15 15 N 1.46508 * 109.46837 * 295.05969 * 14 12 11 16 16 C 1.36934 * 120.00176 * 180.02562 * 15 14 12 17 17 H 1.07995 * 119.99734 * 359.97438 * 16 15 14 18 18 C 1.38808 * 120.00127 * 179.97438 * 16 15 14 19 19 N 1.31617 * 120.00001 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00078 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46868 * 60.00415 * 20 18 16 22 22 H 1.48501 * 109.47191 * 179.97438 * 20 18 16 23 23 H 1.48491 * 109.47261 * 300.00105 * 20 18 16 24 24 C 1.53043 * 109.53543 * 298.50731 * 12 11 10 25 25 H 1.09005 * 109.49566 * 181.31503 * 24 12 11 26 26 C 1.53000 * 109.50235 * 301.41712 * 24 12 11 27 27 C 1.46923 * 120.62829 * 187.45600 * 9 7 6 28 28 O 1.34012 * 125.57690 * 359.97438 * 3 2 1 29 29 H 1.08994 * 109.47648 * 60.00225 * 1 2 3 30 30 H 1.09003 * 109.47278 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47369 * 300.00065 * 1 2 3 32 32 H 1.08004 * 126.41001 * 359.97438 * 4 3 2 33 33 H 1.07997 * 126.65923 * 179.84077 * 5 4 3 34 34 H 1.08993 * 109.58576 * 246.20027 * 10 9 7 35 35 H 1.09006 * 109.58321 * 6.62414 * 10 9 7 36 36 H 1.09006 * 109.63084 * 294.86601 * 11 10 9 37 37 H 1.09002 * 109.45837 * 174.74476 * 11 10 9 38 38 H 1.09000 * 109.47445 * 55.05512 * 14 12 11 39 39 H 1.09000 * 109.47195 * 175.06505 * 14 12 11 40 40 H 0.96999 * 119.99435 * 359.97438 * 15 14 12 41 41 H 0.97002 * 120.00056 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.47296 * 179.84218 * 26 24 12 43 43 H 1.08999 * 109.46546 * 299.83737 * 26 24 12 44 44 H 1.08995 * 109.47133 * 59.83629 * 26 24 12 45 45 H 1.08993 * 109.59233 * 353.37957 * 27 9 7 46 46 H 1.09000 * 109.58489 * 113.80360 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0435 1.2062 0.0000 4 6 3.3892 1.4092 -0.0057 5 6 3.5984 2.7926 0.0002 6 6 2.3519 3.3811 -0.0004 7 6 2.0793 4.8167 -0.0012 8 8 2.9927 5.6098 -0.1404 9 7 0.8168 5.2628 0.1520 10 6 -0.2722 4.3314 0.4769 11 6 -0.9975 4.8456 1.7297 12 6 -1.4537 6.2870 1.4925 13 1 -2.1107 6.3216 0.6236 14 6 -2.2094 6.7913 2.7235 15 7 -3.4411 6.0161 2.8918 16 6 -4.2859 6.2905 3.9340 17 1 -4.0439 7.0782 4.6321 18 6 -5.4531 5.5564 4.0932 19 7 -5.7477 4.5961 3.2426 20 14 -6.6051 5.9303 5.5153 21 1 -7.0759 7.3351 5.4147 22 1 -7.7717 5.0129 5.4617 23 1 -5.8841 5.7405 6.7994 24 6 -0.2328 7.1759 1.2443 25 1 -0.5567 8.2065 1.0986 26 6 0.7071 7.1008 2.4492 27 6 0.5022 6.6890 -0.0086 28 8 1.4263 2.3957 -0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 4.1528 0.6454 -0.0106 33 1 4.5514 3.3007 0.0004 34 1 -0.9708 4.2806 -0.3581 35 1 0.1400 3.3413 0.6720 36 1 -0.3206 4.8140 2.5836 37 1 -1.8655 4.2176 1.9302 38 1 -1.5829 6.6743 3.6077 39 1 -2.4581 7.8443 2.5910 40 1 -3.6585 5.3089 2.2645 41 1 -6.5636 4.0833 3.3536 42 1 1.5777 7.7318 2.2708 43 1 0.1838 7.4474 3.3403 44 1 1.0293 6.0698 2.5950 45 1 1.4251 7.2550 -0.1339 46 1 -0.1347 6.8265 -0.8824 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185359652.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:08 Heat of formation + Delta-G solvation = -57.896733 kcal Electronic energy + Delta-G solvation = -28211.401210 eV Core-core repulsion = 24296.088937 eV Total energy + Delta-G solvation = -3915.312273 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.89600 -41.35460 -39.61895 -39.16719 -36.62200 -35.00303 -34.21890 -33.27470 -31.99690 -30.75006 -28.62429 -28.46333 -27.40015 -25.57750 -24.33814 -23.85094 -23.03392 -22.59548 -21.36495 -20.00881 -19.49077 -19.05679 -18.42604 -18.18212 -17.24061 -16.82598 -16.53938 -16.32657 -15.86726 -15.78359 -15.48009 -15.33243 -15.30431 -14.88330 -14.44903 -14.39654 -14.24030 -14.13849 -13.71493 -13.68159 -13.38461 -13.03192 -12.97359 -12.77610 -12.71453 -12.55535 -12.38400 -12.21928 -12.06737 -11.90964 -11.58593 -11.54715 -11.25615 -11.16962 -11.04035 -10.87619 -9.79808 -9.12565 -8.96346 -7.94258 -5.21719 -0.06104 1.09302 1.30189 1.47674 1.49796 1.55869 1.84133 2.05201 2.22331 2.56653 3.39223 3.40642 3.69479 3.74694 3.77770 3.82682 4.00794 4.19752 4.20724 4.25700 4.27949 4.29557 4.42423 4.44090 4.56091 4.64612 4.68663 4.71072 4.73672 4.79289 4.85274 4.88277 4.95709 5.05674 5.15111 5.16616 5.22029 5.24354 5.27623 5.40279 5.50487 5.52493 5.60673 6.07737 6.23429 6.28695 6.91063 7.35515 8.11891 8.36138 9.28880 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.013450 B = 0.003417 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.222102 B = 8192.317929 C = 9856.367530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.267 6.267 3 C 0.205 3.795 4 C -0.242 4.242 5 C -0.074 4.074 6 C -0.128 4.128 7 C 0.605 3.395 8 O -0.556 6.556 9 N -0.597 5.597 10 C 0.107 3.893 11 C -0.117 4.117 12 C -0.078 4.078 13 H 0.071 0.929 14 C 0.159 3.841 15 N -0.742 5.742 16 C -0.247 4.247 17 H 0.071 0.929 18 C -0.071 4.071 19 N -0.966 5.966 20 Si 0.969 3.031 21 H -0.280 1.280 22 H -0.294 1.294 23 H -0.280 1.280 24 C -0.091 4.091 25 H 0.098 0.902 26 C -0.140 4.140 27 C 0.119 3.881 28 O -0.185 6.185 29 H 0.069 0.931 30 H 0.137 0.863 31 H 0.062 0.938 32 H 0.186 0.814 33 H 0.179 0.821 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.375 0.625 41 H 0.251 0.749 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.042 0.958 45 H 0.094 0.906 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.254 -6.122 -9.688 20.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.181 6.181 3 C 0.108 3.892 4 C -0.262 4.262 5 C -0.094 4.094 6 C -0.178 4.178 7 C 0.395 3.605 8 O -0.438 6.438 9 N -0.327 5.327 10 C -0.015 4.015 11 C -0.156 4.156 12 C -0.097 4.097 13 H 0.089 0.911 14 C 0.033 3.967 15 N -0.385 5.385 16 C -0.379 4.379 17 H 0.089 0.911 18 C -0.263 4.263 19 N -0.617 5.617 20 Si 0.798 3.202 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.206 1.206 24 C -0.110 4.110 25 H 0.116 0.884 26 C -0.197 4.197 27 C -0.002 4.002 28 O -0.086 6.086 29 H 0.088 0.912 30 H 0.155 0.845 31 H 0.081 0.919 32 H 0.203 0.797 33 H 0.196 0.804 34 H 0.100 0.900 35 H 0.119 0.881 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.208 0.792 41 H 0.060 0.940 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.112 0.888 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 17.406 -5.728 -9.608 20.690 hybrid contribution -1.343 -0.239 0.727 1.546 sum 16.063 -5.968 -8.881 19.300 Atomic orbital electron populations 1.23482 0.74894 1.06985 1.03021 1.86404 1.24748 1.18213 1.88698 1.21380 0.90362 0.78794 0.98627 1.21088 0.92360 0.96948 1.15792 1.22241 0.97724 0.93054 0.96390 1.21795 0.87744 0.87103 1.21146 1.16617 0.82760 0.84527 0.76555 1.90842 1.44610 1.54819 1.53551 1.48007 1.06992 1.09638 1.68112 1.22240 0.88764 0.92908 0.97572 1.21902 0.99751 0.96624 0.97283 1.21198 0.95926 0.94784 0.97822 0.91082 1.20837 0.86564 0.93750 0.95575 1.42547 1.22225 1.41449 1.32274 1.19569 1.00468 1.13603 1.04223 0.91108 1.25473 1.00222 0.98945 1.01692 1.69784 1.26811 1.25395 1.39706 0.85278 0.78311 0.77190 0.79386 1.20577 1.22016 1.20621 1.21432 0.94328 1.00111 0.95128 0.88393 1.21803 0.98946 1.01271 0.97719 1.21812 1.01145 0.79517 0.97757 1.84185 1.36892 1.14376 1.73173 0.91230 0.84469 0.91885 0.79665 0.80364 0.90014 0.88076 0.92171 0.91661 0.96383 0.96432 0.79196 0.94001 0.92093 0.92691 0.93855 0.88797 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 10.74 113.37 1.22 1.35 16 2 O -0.27 -4.84 10.55 -64.40 -0.68 -5.52 16 3 C 0.20 4.23 7.86 67.32 0.53 4.76 16 4 C -0.24 -4.46 10.89 22.18 0.24 -4.22 16 5 C -0.07 -1.53 10.67 22.58 0.24 -1.29 16 6 C -0.13 -3.17 6.79 24.22 0.16 -3.00 16 7 C 0.61 16.73 7.63 86.29 0.66 17.38 16 8 O -0.56 -17.75 16.31 -4.56 -0.07 -17.82 16 9 N -0.60 -15.05 2.41 -823.35 -1.98 -17.03 16 10 C 0.11 2.63 6.13 86.51 0.53 3.16 16 11 C -0.12 -3.47 4.92 30.82 0.15 -3.32 16 12 C -0.08 -2.36 1.96 -10.77 -0.02 -2.38 16 13 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 14 C 0.16 6.17 5.19 86.38 0.45 6.62 16 15 N -0.74 -36.74 5.32 -343.44 -1.83 -38.56 16 16 C -0.25 -13.66 9.99 84.03 0.84 -12.82 16 17 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 18 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 19 N -0.97 -57.69 13.06 21.65 0.28 -57.40 16 20 Si 0.97 45.61 29.55 68.60 2.03 47.63 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 C -0.09 -2.22 2.72 -10.71 -0.03 -2.25 16 25 H 0.10 2.17 8.14 -2.38 -0.02 2.16 16 26 C -0.14 -3.61 8.38 71.98 0.60 -3.01 16 27 C 0.12 2.74 5.84 86.36 0.50 3.25 16 28 O -0.18 -4.22 6.73 13.48 0.09 -4.13 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.19 2.40 8.06 -2.91 -0.02 2.37 16 33 H 0.18 3.13 8.06 -2.91 -0.02 3.11 16 34 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.10 2.45 4.23 -21.42 -0.09 2.36 16 36 H 0.06 1.87 6.33 -2.38 -0.02 1.86 16 37 H 0.06 2.24 7.15 -2.39 -0.02 2.22 16 38 H 0.02 0.73 6.74 -2.39 -0.02 0.71 16 39 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.38 19.46 6.84 -92.71 -0.63 18.82 16 41 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 42 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.05 1.48 6.59 -2.39 -0.02 1.46 16 44 H 0.04 1.21 5.97 -2.39 -0.01 1.20 16 45 H 0.09 2.22 7.00 -2.39 -0.02 2.20 16 46 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -67.42 366.82 4.67 -62.74 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: 0.29 Total: 29.42 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 6.55 Total: 0.68 kcal Atomic # 7 Polarization: -109.47 SS G_CDS: -3.52 Total: -112.99 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.66 Total: -27.48 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -67.42 4.67 -62.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185359652.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.848 kcal (2) G-P(sol) polarization free energy of solvation -67.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds