Wall clock time and date at job start Tue Mar 31 2020 16:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35373 * 117.00244 * 2 1 4 4 C 1.36090 * 125.58057 * 180.02562 * 3 2 1 5 5 C 1.39907 * 107.18124 * 179.97438 * 4 3 2 6 6 C 1.37835 * 106.67213 * 0.02562 * 5 4 3 7 7 C 1.46134 * 126.02758 * 179.97438 * 6 5 4 8 8 O 1.21762 * 120.00363 * 6.96966 * 7 6 5 9 9 N 1.34771 * 119.99645 * 186.96793 * 7 6 5 10 10 C 1.46932 * 120.63353 * 6.42593 * 9 7 6 11 11 C 1.53193 * 108.77559 * 233.58692 * 10 9 7 12 12 C 1.53048 * 109.31352 * 305.36555 * 11 10 9 13 13 H 1.09006 * 109.45553 * 301.36045 * 12 11 10 14 14 C 1.52993 * 109.46080 * 181.38917 * 12 11 10 15 15 N 1.46499 * 109.47499 * 64.99563 * 14 12 11 16 16 C 1.36935 * 120.00262 * 180.02562 * 15 14 12 17 17 H 1.08010 * 119.99878 * 359.97438 * 16 15 14 18 18 C 1.38803 * 120.00410 * 179.97438 * 16 15 14 19 19 N 1.31623 * 120.00158 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99774 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47200 * 89.99972 * 20 18 16 22 22 H 1.48508 * 109.47273 * 209.99842 * 20 18 16 23 23 H 1.48497 * 109.47232 * 329.99941 * 20 18 16 24 24 C 1.53035 * 109.54014 * 61.36132 * 12 11 10 25 25 H 1.08996 * 109.50215 * 178.65327 * 24 12 11 26 26 C 1.53004 * 109.49757 * 58.58943 * 24 12 11 27 27 C 1.46930 * 120.62983 * 186.14558 * 9 7 6 28 28 O 1.34007 * 125.57678 * 359.97211 * 3 2 1 29 29 H 1.08997 * 109.47032 * 300.00448 * 1 2 3 30 30 H 1.09000 * 109.47039 * 59.99878 * 1 2 3 31 31 H 1.09000 * 109.47198 * 180.02562 * 1 2 3 32 32 H 1.08007 * 126.41130 * 359.94766 * 4 3 2 33 33 H 1.07995 * 126.66711 * 180.02562 * 5 4 3 34 34 H 1.08995 * 109.58422 * 353.36692 * 10 9 7 35 35 H 1.08995 * 109.58845 * 113.65937 * 10 9 7 36 36 H 1.09001 * 109.49590 * 65.31373 * 11 10 9 37 37 H 1.09001 * 109.49752 * 185.37755 * 11 10 9 38 38 H 1.08996 * 109.47012 * 185.00116 * 14 12 11 39 39 H 1.09011 * 109.46910 * 304.99284 * 14 12 11 40 40 H 0.97001 * 119.99989 * 359.97438 * 15 14 12 41 41 H 0.97000 * 119.99904 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.46798 * 59.99379 * 26 24 12 43 43 H 1.08993 * 109.47254 * 180.02562 * 26 24 12 44 44 H 1.09004 * 109.46742 * 300.00234 * 26 24 12 45 45 H 1.09002 * 109.58663 * 246.19837 * 27 9 7 46 46 H 1.08993 * 109.58588 * 6.62483 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2062 0.0000 4 6 3.3893 1.4091 -0.0005 5 6 3.5986 2.7925 -0.0009 6 6 2.3522 3.3810 0.0000 7 6 2.0795 4.8167 0.0005 8 8 2.9942 5.6102 -0.1278 9 7 0.8157 5.2624 0.1429 10 6 -0.2789 4.3280 0.4386 11 6 -1.3863 4.5204 -0.6023 12 6 -1.8060 5.9919 -0.6288 13 1 -2.1528 6.2884 0.3611 14 6 -2.9358 6.1816 -1.6428 15 7 -4.1222 5.4480 -1.1949 16 6 -5.2659 5.4706 -1.9477 17 1 -5.2934 6.0296 -2.8714 18 6 -6.3898 4.7752 -1.5236 19 7 -7.4892 4.7974 -2.2469 20 14 -6.3420 3.8078 0.0737 21 1 -6.7661 4.6834 1.1956 22 1 -7.2625 2.6465 -0.0231 23 1 -4.9594 3.3244 0.3185 24 6 -0.6099 6.8582 -1.0302 25 1 -0.9155 7.9036 -1.0721 26 6 -0.1001 6.4197 -2.4045 27 6 0.5072 6.6930 0.0115 28 8 1.4265 2.3957 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.1529 0.6453 -0.0002 33 1 4.5515 3.3005 -0.0017 34 1 0.0921 3.3042 0.3923 35 1 -0.6722 4.5294 1.4350 36 1 -1.0158 4.2300 -1.5855 37 1 -2.2442 3.9015 -0.3395 38 1 -3.1744 7.2418 -1.7268 39 1 -2.6194 5.8023 -2.6145 40 1 -4.0974 4.9457 -0.3655 41 1 -8.2745 4.3111 -1.9508 42 1 -0.8955 6.5352 -3.1408 43 1 0.7520 7.0366 -2.6898 44 1 0.2065 5.3746 -2.3618 45 1 0.1750 7.0849 0.9728 46 1 1.3970 7.2300 -0.3167 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185359653.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:11 Heat of formation + Delta-G solvation = -52.783490 kcal Electronic energy + Delta-G solvation = -28478.151335 eV Core-core repulsion = 24563.060788 eV Total energy + Delta-G solvation = -3915.090546 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.91529 -41.36273 -39.63962 -39.21553 -36.76369 -35.02134 -34.23690 -33.45530 -32.30248 -30.77672 -28.84637 -28.53768 -27.43178 -25.39418 -24.31985 -23.77491 -23.06159 -22.60335 -21.43625 -20.20012 -19.66469 -19.23060 -18.54042 -18.11104 -17.24855 -16.79406 -16.52128 -16.29957 -16.01220 -15.94051 -15.67607 -15.33821 -15.09046 -14.90066 -14.64937 -14.48277 -14.26122 -14.15755 -13.82761 -13.74564 -13.39384 -13.24147 -13.05324 -12.84495 -12.73620 -12.54712 -12.38872 -12.16959 -12.09685 -11.85773 -11.60353 -11.55149 -11.33491 -11.15789 -11.07562 -10.92578 -9.81296 -9.27802 -9.13076 -8.02141 -5.35751 -0.07098 1.05700 1.30498 1.36150 1.42198 1.49313 1.84600 2.04581 2.20156 2.49085 3.29254 3.38495 3.53124 3.70893 3.75592 3.79028 3.97125 4.07359 4.18456 4.19562 4.23386 4.26442 4.38783 4.43340 4.54977 4.61283 4.66844 4.69628 4.70939 4.78859 4.84662 4.89118 4.93929 5.02045 5.11537 5.14140 5.19666 5.21932 5.26926 5.37005 5.49641 5.58771 5.76361 6.07958 6.21568 6.23250 6.90545 7.08968 7.84652 8.05256 9.19735 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.012621 B = 0.004021 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.907630 B = 6961.007614 C = 8660.660041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.267 6.267 3 C 0.204 3.796 4 C -0.243 4.243 5 C -0.073 4.073 6 C -0.128 4.128 7 C 0.605 3.395 8 O -0.558 6.558 9 N -0.597 5.597 10 C 0.098 3.902 11 C -0.123 4.123 12 C -0.084 4.084 13 H 0.081 0.919 14 C 0.162 3.838 15 N -0.755 5.755 16 C -0.236 4.236 17 H 0.051 0.949 18 C -0.066 4.066 19 N -0.987 5.987 20 Si 0.956 3.044 21 H -0.279 1.279 22 H -0.297 1.297 23 H -0.243 1.243 24 C -0.090 4.090 25 H 0.099 0.901 26 C -0.143 4.143 27 C 0.120 3.880 28 O -0.183 6.183 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.137 0.863 32 H 0.185 0.815 33 H 0.179 0.821 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.023 0.977 39 H 0.021 0.979 40 H 0.367 0.633 41 H 0.258 0.742 42 H 0.053 0.947 43 H 0.059 0.941 44 H 0.044 0.956 45 H 0.089 0.911 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.121 -6.838 8.901 25.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.181 6.181 3 C 0.107 3.893 4 C -0.262 4.262 5 C -0.093 4.093 6 C -0.178 4.178 7 C 0.395 3.605 8 O -0.439 6.439 9 N -0.328 5.328 10 C -0.024 4.024 11 C -0.161 4.161 12 C -0.102 4.102 13 H 0.099 0.901 14 C 0.036 3.964 15 N -0.401 5.401 16 C -0.367 4.367 17 H 0.069 0.931 18 C -0.257 4.257 19 N -0.637 5.637 20 Si 0.783 3.217 21 H -0.205 1.205 22 H -0.224 1.224 23 H -0.167 1.167 24 C -0.110 4.110 25 H 0.117 0.883 26 C -0.200 4.200 27 C -0.001 4.001 28 O -0.085 6.085 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.155 0.845 32 H 0.202 0.798 33 H 0.196 0.804 34 H 0.125 0.875 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.041 0.959 39 H 0.039 0.961 40 H 0.201 0.799 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.107 0.893 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 23.219 -6.472 8.653 25.610 hybrid contribution -1.072 -0.585 0.343 1.268 sum 22.147 -7.056 8.996 24.924 Atomic orbital electron populations 1.23487 0.74951 1.06983 1.03030 1.86407 1.24674 1.18315 1.88688 1.21434 0.90393 0.78880 0.98551 1.21079 0.92352 0.96974 1.15807 1.22235 0.97755 0.93022 0.96330 1.21814 0.87730 0.87084 1.21134 1.16624 0.82888 0.84483 0.76455 1.90848 1.44767 1.54837 1.53491 1.48005 1.06567 1.09369 1.68811 1.22342 0.86797 0.94141 0.99074 1.21894 0.97845 0.96783 0.99549 1.21281 0.94118 0.95405 0.99442 0.90071 1.20822 0.85340 0.94358 0.95916 1.42686 1.10412 1.60870 1.26105 1.19031 0.89893 1.24757 1.02978 0.93056 1.25555 0.95288 1.02259 1.02594 1.69903 1.03555 1.48653 1.41621 0.85392 0.78562 0.78157 0.79580 1.20512 1.22364 1.16749 1.21504 0.93751 1.00708 0.95035 0.88309 1.21827 1.00832 1.00936 0.96439 1.21892 0.98810 0.79666 0.99748 1.84161 1.36523 1.14348 1.73427 0.91140 0.91925 0.84545 0.79770 0.80399 0.87495 0.89509 0.91929 0.91107 0.95945 0.96053 0.79925 0.93366 0.92751 0.92210 0.93672 0.89324 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 10.74 113.37 1.22 1.33 16 2 O -0.27 -4.58 10.55 -64.43 -0.68 -5.26 16 3 C 0.20 3.94 7.86 67.32 0.53 4.47 16 4 C -0.24 -4.17 10.89 22.17 0.24 -3.93 16 5 C -0.07 -1.41 10.67 22.58 0.24 -1.17 16 6 C -0.13 -2.95 6.86 24.23 0.17 -2.78 16 7 C 0.61 15.59 7.64 86.29 0.66 16.25 16 8 O -0.56 -16.98 16.32 -4.55 -0.07 -17.05 16 9 N -0.60 -13.55 2.40 -823.35 -1.98 -15.52 16 10 C 0.10 2.05 6.32 86.36 0.55 2.60 16 11 C -0.12 -3.08 4.91 30.67 0.15 -2.93 16 12 C -0.08 -2.20 1.96 -10.77 -0.02 -2.22 16 13 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 14 C 0.16 5.82 5.18 86.38 0.45 6.27 16 15 N -0.75 -33.80 5.12 -343.46 -1.76 -35.56 16 16 C -0.24 -13.30 10.47 84.03 0.88 -12.42 16 17 H 0.05 3.22 8.06 -2.91 -0.02 3.19 16 18 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 19 N -0.99 -62.88 13.97 21.65 0.30 -62.58 16 20 Si 0.96 43.67 27.73 68.60 1.90 45.57 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 23 H -0.24 -9.58 6.52 99.48 0.65 -8.93 16 24 C -0.09 -2.00 2.72 -10.57 -0.03 -2.03 16 25 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 26 C -0.14 -3.44 8.39 71.98 0.60 -2.83 16 27 C 0.12 2.49 5.85 86.51 0.51 3.00 16 28 O -0.18 -3.88 6.62 13.54 0.09 -3.79 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 33 H 0.18 2.89 8.06 -2.91 -0.02 2.87 16 34 H 0.11 2.21 3.79 -52.07 -0.20 2.01 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.06 1.70 6.34 -2.39 -0.02 1.69 16 37 H 0.07 1.94 7.15 -2.39 -0.02 1.92 16 38 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.02 0.82 6.74 -2.38 -0.02 0.80 16 40 H 0.37 15.29 4.71 -92.71 -0.44 14.85 16 41 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 42 H 0.05 1.40 6.58 -2.39 -0.02 1.39 16 43 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.04 1.17 5.97 -2.38 -0.01 1.15 16 45 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.09 2.01 7.04 -2.39 -0.02 1.99 16 Total: -1.00 -71.75 363.49 4.73 -67.03 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: 0.32 Total: 26.92 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 6.61 Total: 0.24 kcal Atomic # 7 Polarization: -110.22 SS G_CDS: -3.43 Total: -113.66 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.66 Total: -26.10 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.90 Total: 45.57 kcal Total: -71.75 4.73 -67.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185359653.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.243 kcal (2) G-P(sol) polarization free energy of solvation -71.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds