Wall clock time and date at job start Tue Mar 31 2020 16:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.63955 * 2 1 4 4 C 1.54333 * 111.00080 * 236.91689 * 2 1 3 5 5 N 1.47022 * 107.26582 * 219.60285 * 4 2 1 6 6 C 1.36935 * 125.64692 * 178.85730 * 5 4 2 7 7 H 1.08000 * 120.00085 * 346.09709 * 6 5 4 8 8 C 1.38810 * 120.00161 * 166.10503 * 6 5 4 9 9 N 1.31618 * 120.00060 * 0.39173 * 8 6 5 10 10 Si 1.86800 * 120.00398 * 180.39638 * 8 6 5 11 11 H 1.48509 * 109.47056 * 84.98210 * 10 8 6 12 12 H 1.48498 * 109.46963 * 324.98885 * 10 8 6 13 13 H 1.48489 * 109.47432 * 204.98475 * 10 8 6 14 14 C 1.47422 * 108.70390 * 358.58390 * 5 4 2 15 15 C 1.54912 * 104.83112 * 24.36104 * 14 5 4 16 16 H 1.08997 * 111.00703 * 81.05729 * 15 14 5 17 17 N 1.46504 * 111.00471 * 204.87885 * 15 14 5 18 18 C 1.34775 * 119.99336 * 273.54167 * 17 15 14 19 19 O 1.21278 * 120.00454 * 0.02562 * 18 17 15 20 20 C 1.50707 * 119.99737 * 180.02562 * 18 17 15 21 21 C 1.53002 * 109.46921 * 299.99929 * 20 18 17 22 22 C 1.52995 * 109.47040 * 59.99926 * 20 18 17 23 23 C 1.52997 * 109.47240 * 180.02562 * 20 18 17 24 24 C 1.53003 * 109.47029 * 185.48639 * 23 20 18 25 25 F 1.39894 * 109.47269 * 64.26541 * 24 23 20 26 26 F 1.39902 * 109.46794 * 184.26328 * 24 23 20 27 27 F 1.39894 * 109.47038 * 304.26354 * 24 23 20 28 28 H 1.09006 * 109.47329 * 296.85990 * 1 2 3 29 29 H 1.08999 * 109.47295 * 56.86086 * 1 2 3 30 30 H 1.09002 * 109.47230 * 176.86353 * 1 2 3 31 31 H 1.09004 * 109.98758 * 100.12513 * 4 2 1 32 32 H 1.08998 * 109.78095 * 338.96409 * 4 2 1 33 33 H 0.96995 * 120.00501 * 180.02562 * 9 8 6 34 34 H 1.08998 * 110.36768 * 143.19107 * 14 5 4 35 35 H 1.08994 * 110.37200 * 265.51930 * 14 5 4 36 36 H 0.96992 * 120.00308 * 93.54466 * 17 15 14 37 37 H 1.09007 * 109.47255 * 47.41529 * 21 20 18 38 38 H 1.09005 * 109.47259 * 167.40940 * 21 20 18 39 39 H 1.08999 * 109.47132 * 287.41638 * 21 20 18 40 40 H 1.09002 * 109.47312 * 69.50185 * 22 20 18 41 41 H 1.09000 * 109.47200 * 189.50153 * 22 20 18 42 42 H 1.09000 * 109.47518 * 309.49882 * 22 20 18 43 43 H 1.09002 * 109.46536 * 305.48255 * 23 20 18 44 44 H 1.09001 * 109.47512 * 65.48144 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0831 -0.7865 -1.2072 5 7 3.2494 -1.5471 -0.7352 6 6 4.0125 -2.3919 -1.4963 7 1 3.6557 -2.7201 -2.4613 8 6 5.2445 -2.8266 -1.0273 9 7 5.6759 -2.4329 0.1522 10 14 6.2905 -3.9701 -2.0702 11 1 7.0964 -3.1694 -3.0266 12 1 5.4090 -4.8990 -2.8222 13 1 7.1973 -4.7510 -1.1912 14 6 3.4652 -1.2447 0.6914 15 6 2.0790 -0.7934 1.2152 16 1 1.4469 -1.6528 1.4384 17 7 2.2175 0.0721 2.3891 18 6 2.3109 -0.4707 3.6192 19 8 2.2808 -1.6756 3.7542 20 6 2.4528 0.4196 4.8269 21 6 3.7256 1.2584 4.6953 22 6 1.2390 1.3461 4.9229 23 6 2.5385 -0.4419 6.0883 24 6 2.5448 0.4613 7.3233 25 9 1.3274 1.1454 7.4069 26 9 2.7208 -0.3192 8.4709 27 9 3.5918 1.3834 7.2213 28 1 -0.3634 0.4643 0.9168 29 1 -0.3634 0.5618 -0.8605 30 1 -0.3634 -1.0261 -0.0562 31 1 2.3848 -0.0962 -1.9951 32 1 1.3216 -1.4702 -1.5823 33 1 6.5370 -2.7363 0.4798 34 1 3.7992 -2.1363 1.2219 35 1 4.1929 -0.4410 0.8030 36 1 2.2419 1.0357 2.2811 37 1 3.7696 1.6982 3.6989 38 1 3.7166 2.0520 5.4425 39 1 4.5973 0.6228 4.8507 40 1 0.3563 0.7626 5.1845 41 1 1.4169 2.0996 5.6901 42 1 1.0791 1.8362 3.9625 43 1 1.6782 -1.1099 6.1311 44 1 3.4552 -1.0311 6.0644 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210049805.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:25 Heat of formation + Delta-G solvation = -172.690724 kcal Electronic energy + Delta-G solvation = -29111.580427 eV Core-core repulsion = 24649.433572 eV Total energy + Delta-G solvation = -4462.146855 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.35152 -47.79607 -47.79142 -40.12820 -37.84274 -35.78262 -33.99478 -32.65503 -30.41129 -29.72019 -27.68732 -27.54304 -25.69200 -24.44751 -23.73829 -22.36850 -20.28741 -20.11378 -19.16587 -18.75024 -18.67571 -17.06282 -16.91928 -16.31428 -16.00340 -15.11938 -14.97149 -14.79666 -14.75135 -14.57296 -14.21323 -13.95854 -13.93139 -13.85334 -13.73471 -13.51891 -13.01847 -12.94111 -12.54380 -12.39382 -12.27889 -12.03705 -11.87591 -11.69488 -11.62791 -11.34090 -11.28178 -11.21307 -11.02988 -10.79680 -10.63109 -10.42278 -9.97998 -9.87372 -9.78239 -9.43888 -8.62300 -8.49846 -6.78875 -5.73085 -3.10369 2.57813 2.86369 3.29850 3.40595 3.45355 3.47461 3.74335 3.85656 3.92938 4.44973 4.49786 4.63403 4.66855 4.95398 5.10523 5.26017 5.27095 5.38481 5.41957 5.46882 5.54036 5.60081 5.66448 5.70659 5.72414 5.91352 5.94699 6.01317 6.10236 6.12458 6.19550 6.34410 6.44229 6.66033 6.76195 6.92627 7.43742 7.60944 7.79267 7.85371 8.28141 8.49526 9.19152 9.80469 10.47255 11.38126 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.016881 B = 0.003462 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.289354 B = 8085.523964 C = 9221.215169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 H 0.074 0.926 4 C 0.141 3.859 5 N -0.602 5.602 6 C -0.233 4.233 7 H 0.076 0.924 8 C -0.003 4.003 9 N -0.916 5.916 10 Si 0.912 3.088 11 H -0.287 1.287 12 H -0.281 1.281 13 H -0.290 1.290 14 C 0.170 3.830 15 C 0.117 3.883 16 H 0.089 0.911 17 N -0.708 5.708 18 C 0.528 3.472 19 O -0.533 6.533 20 C -0.082 4.082 21 C -0.158 4.158 22 C -0.154 4.154 23 C -0.145 4.145 24 C 0.454 3.546 25 F -0.182 7.182 26 F -0.185 7.185 27 F -0.179 7.179 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.024 0.976 32 H 0.027 0.973 33 H 0.253 0.747 34 H 0.079 0.921 35 H 0.025 0.975 36 H 0.395 0.605 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.118 0.882 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.385 10.957 12.368 19.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.130 4.130 3 H 0.092 0.908 4 C 0.015 3.985 5 N -0.329 5.329 6 C -0.362 4.362 7 H 0.094 0.906 8 C -0.200 4.200 9 N -0.562 5.562 10 Si 0.742 3.258 11 H -0.215 1.215 12 H -0.206 1.206 13 H -0.216 1.216 14 C 0.044 3.956 15 C 0.012 3.988 16 H 0.107 0.893 17 N -0.357 5.357 18 C 0.312 3.688 19 O -0.410 6.410 20 C -0.086 4.086 21 C -0.215 4.215 22 C -0.211 4.211 23 C -0.183 4.183 24 C 0.400 3.600 25 F -0.163 7.163 26 F -0.167 7.167 27 F -0.160 7.160 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.042 0.958 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.043 0.957 36 H 0.229 0.771 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.136 0.864 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.205 9.972 12.486 18.441 hybrid contribution 0.717 0.065 -0.428 0.838 sum -8.488 10.037 12.059 17.838 Atomic orbital electron populations 1.21741 0.94914 1.01901 1.00921 1.22406 0.95189 0.99229 0.96153 0.90794 1.21350 0.90432 0.93099 0.93640 1.44340 1.31651 1.50387 1.06491 1.18989 0.97034 1.19964 1.00179 0.90593 1.24907 0.97015 1.00738 0.97377 1.69922 1.20473 1.47883 1.17933 0.86146 0.80264 0.80144 0.79238 1.21462 1.20637 1.21616 1.21720 0.89220 1.00043 0.84591 1.22712 1.01116 0.92411 0.82525 0.89274 1.45809 1.73891 1.10019 1.06028 1.19938 0.76387 0.88452 0.84011 1.90738 1.49480 1.14762 1.85975 1.20719 0.99124 0.95983 0.92768 1.22303 0.95236 1.00324 1.03686 1.22258 0.96162 0.99242 1.03466 1.22769 1.09080 0.97352 0.89113 1.20622 0.73393 0.80121 0.85844 1.93151 1.45316 1.81257 1.96594 1.93190 1.95162 1.74584 1.53714 1.93132 1.58559 1.68477 1.95871 0.93095 0.92808 0.92485 0.95768 0.95557 0.93627 0.90285 0.95679 0.77126 0.91459 0.89911 0.91212 0.91412 0.90424 0.91545 0.86413 0.86369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.17 37.16 0.34 -1.43 16 2 C -0.11 -1.77 3.15 -88.78 -0.28 -2.05 16 3 H 0.07 1.09 8.00 -51.93 -0.42 0.67 16 4 C 0.14 2.86 6.85 -3.06 -0.02 2.84 16 5 N -0.60 -15.39 3.39 -170.07 -0.58 -15.97 16 6 C -0.23 -6.55 10.24 -15.06 -0.15 -6.70 16 7 H 0.08 2.06 7.83 -52.49 -0.41 1.64 16 8 C 0.00 -0.09 5.47 -17.43 -0.10 -0.19 16 9 N -0.92 -27.20 10.53 55.49 0.58 -26.61 16 10 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 C 0.17 4.13 5.12 -2.53 -0.01 4.12 16 15 C 0.12 2.17 2.76 -65.78 -0.18 1.99 16 16 H 0.09 1.82 7.64 -51.93 -0.40 1.42 16 17 N -0.71 -10.48 4.85 -51.72 -0.25 -10.73 16 18 C 0.53 8.10 6.48 -10.98 -0.07 8.03 16 19 O -0.53 -10.50 15.65 5.56 0.09 -10.42 16 20 C -0.08 -0.92 0.65 -155.66 -0.10 -1.02 16 21 C -0.16 -1.65 7.56 37.16 0.28 -1.37 16 22 C -0.15 -1.38 7.08 37.16 0.26 -1.12 16 23 C -0.14 -1.57 3.87 -26.73 -0.10 -1.67 16 24 C 0.45 4.58 2.96 37.16 0.11 4.69 16 25 F -0.18 -1.79 13.93 2.25 0.03 -1.76 16 26 F -0.19 -2.02 17.32 2.25 0.04 -1.98 16 27 F -0.18 -1.83 13.82 2.25 0.03 -1.80 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.03 0.53 7.78 -51.93 -0.40 0.12 16 33 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.08 2.26 6.84 -51.93 -0.36 1.91 16 35 H 0.03 0.65 8.08 -51.93 -0.42 0.24 16 36 H 0.39 4.65 7.18 -40.82 -0.29 4.36 16 37 H 0.07 0.68 7.26 -51.93 -0.38 0.30 16 38 H 0.08 0.75 5.71 -51.93 -0.30 0.46 16 39 H 0.07 0.80 8.04 -51.93 -0.42 0.38 16 40 H 0.07 0.61 8.01 -51.93 -0.42 0.20 16 41 H 0.08 0.64 6.03 -51.93 -0.31 0.32 16 42 H 0.07 0.53 7.32 -51.93 -0.38 0.15 16 43 H 0.12 1.27 7.94 -51.93 -0.41 0.86 16 44 H 0.12 1.33 8.08 -51.93 -0.42 0.91 16 LS Contribution 354.28 15.07 5.34 5.34 Total: -1.00 -32.14 354.28 -6.32 -38.45 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.55 Total: 2.15 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -0.03 Total: 6.11 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -0.24 Total: -53.31 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 9 Polarization: -5.64 SS G_CDS: 0.10 Total: -5.54 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.14 -6.32 -38.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210049805.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.237 kcal (2) G-P(sol) polarization free energy of solvation -32.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds