Wall clock time and date at job start Tue Mar 31 2020 16:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.63808 * 2 1 4 4 C 1.54331 * 110.85313 * 236.82988 * 2 1 3 5 5 N 1.47028 * 107.26619 * 219.67245 * 4 2 1 6 6 C 1.36935 * 125.64445 * 178.85025 * 5 4 2 7 7 H 1.07996 * 120.00120 * 347.82302 * 6 5 4 8 8 C 1.38816 * 119.99635 * 167.82713 * 6 5 4 9 9 N 1.31621 * 119.99948 * 326.27381 * 8 6 5 10 10 Si 1.86802 * 119.99914 * 145.99645 * 8 6 5 11 11 H 1.48496 * 109.47113 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46970 * 120.00125 * 10 8 6 13 13 H 1.48501 * 109.47141 * 239.99794 * 10 8 6 14 14 C 1.47420 * 108.70211 * 358.58814 * 5 4 2 15 15 C 1.54910 * 104.83518 * 24.35267 * 14 5 4 16 16 H 1.09001 * 111.00579 * 81.06261 * 15 14 5 17 17 N 1.46494 * 111.00885 * 204.87717 * 15 14 5 18 18 C 1.34774 * 120.00450 * 273.54879 * 17 15 14 19 19 O 1.21284 * 119.99667 * 359.97438 * 18 17 15 20 20 C 1.50700 * 120.00161 * 179.97438 * 18 17 15 21 21 C 1.53005 * 109.46652 * 179.97438 * 20 18 17 22 22 C 1.52998 * 109.47315 * 299.99841 * 21 20 18 23 23 C 1.52997 * 109.47314 * 60.00351 * 21 20 18 24 24 C 1.53007 * 109.46903 * 180.02562 * 21 20 18 25 25 F 1.39897 * 109.46943 * 59.99937 * 24 21 20 26 26 F 1.39896 * 109.46924 * 179.97438 * 24 21 20 27 27 F 1.39900 * 109.47110 * 299.99995 * 24 21 20 28 28 H 1.08996 * 109.47499 * 296.86059 * 1 2 3 29 29 H 1.09008 * 109.46590 * 56.86439 * 1 2 3 30 30 H 1.09003 * 109.47165 * 176.85979 * 1 2 3 31 31 H 1.09002 * 109.99038 * 100.20390 * 4 2 1 32 32 H 1.09000 * 109.77959 * 339.03009 * 4 2 1 33 33 H 0.96996 * 119.99512 * 353.97663 * 9 8 6 34 34 H 1.09002 * 110.36697 * 143.19286 * 14 5 4 35 35 H 1.08996 * 110.36788 * 265.51898 * 14 5 4 36 36 H 0.97004 * 120.00188 * 93.54486 * 17 15 14 37 37 H 1.09000 * 109.47046 * 299.99717 * 20 18 17 38 38 H 1.08993 * 109.47129 * 60.00296 * 20 18 17 39 39 H 1.09004 * 109.47082 * 60.00282 * 22 21 20 40 40 H 1.09001 * 109.47433 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.47283 * 300.00053 * 22 21 20 42 42 H 1.09000 * 109.47538 * 59.99523 * 23 21 20 43 43 H 1.09002 * 109.47284 * 180.02562 * 23 21 20 44 44 H 1.09004 * 109.46861 * 299.99582 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0794 -0.7891 -1.2072 5 7 3.2446 -1.5520 -0.7362 6 6 4.0044 -2.3995 -1.4975 7 1 3.6580 -2.7058 -2.4734 8 6 5.2198 -2.8649 -1.0147 9 7 5.9613 -2.0948 -0.2469 10 14 5.7993 -4.5870 -1.4483 11 1 4.7885 -5.2462 -2.3136 12 1 7.0932 -4.5061 -2.1727 13 1 5.9774 -5.3774 -0.2038 14 6 3.4633 -1.2486 0.6898 15 6 2.0789 -0.7933 1.2153 16 1 1.4451 -1.6510 1.4404 17 7 2.2212 0.0730 2.3880 18 6 2.3153 -0.4685 3.6185 19 8 2.2816 -1.6732 3.7550 20 6 2.4623 0.4227 4.8248 21 6 2.5464 -0.4377 6.0873 22 6 1.2709 -1.2719 6.2218 23 6 3.7567 -1.3685 5.9904 24 6 2.6950 0.4671 7.3121 25 9 1.5879 1.3179 7.4004 26 9 2.7713 -0.3195 8.4664 27 9 3.8610 1.2304 7.1894 28 1 -0.3634 0.4643 0.9167 29 1 -0.3633 0.5618 -0.8606 30 1 -0.3634 -1.0261 -0.0563 31 1 2.3816 -0.1004 -1.9962 32 1 1.3156 -1.4715 -1.5803 33 1 5.7023 -1.1734 -0.0895 34 1 3.7960 -2.1405 1.2208 35 1 4.1930 -0.4464 0.7994 36 1 2.2479 1.0365 2.2789 37 1 3.3708 1.0173 4.7287 38 1 1.5998 1.0855 4.8941 39 1 1.1646 -1.9165 5.3493 40 1 1.3306 -1.8845 7.1214 41 1 0.4086 -0.6087 6.2909 42 1 4.6654 -0.7742 5.8945 43 1 3.8164 -1.9818 6.8896 44 1 3.6504 -2.0131 5.1178 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210684377.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:28 Heat of formation + Delta-G solvation = -178.757310 kcal Electronic energy + Delta-G solvation = -29027.809235 eV Core-core repulsion = 24565.399313 eV Total energy + Delta-G solvation = -4462.409922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.28942 -47.75115 -47.73476 -40.21502 -38.16464 -36.03133 -34.17867 -32.91455 -30.42597 -29.28302 -27.47563 -27.24982 -26.24144 -25.55454 -23.65859 -21.38455 -20.46983 -20.22248 -19.54098 -18.49618 -18.46596 -17.61960 -17.50860 -16.36829 -16.04873 -15.52439 -14.94036 -14.73107 -14.52212 -14.26428 -14.17404 -13.92182 -13.91349 -13.81972 -13.73867 -13.66883 -13.50784 -13.12918 -13.02775 -12.77004 -12.44086 -12.07077 -11.92374 -11.62695 -11.56191 -11.43686 -11.32253 -11.28372 -10.85845 -10.67623 -10.65375 -10.45256 -10.12700 -10.01366 -9.68390 -9.53163 -8.73891 -8.33381 -6.98619 -6.16003 -3.09767 2.52521 2.67310 3.17713 3.53945 3.58052 3.65388 3.71038 3.87861 3.89611 4.43132 4.59504 4.60071 4.72544 4.84654 4.99822 5.14923 5.20337 5.23230 5.27009 5.30448 5.56085 5.60640 5.63341 5.73344 5.74633 5.77599 5.82273 5.93721 6.00870 6.13231 6.20723 6.25672 6.31755 6.55166 6.59455 6.76235 6.94484 7.04153 7.61246 7.78299 8.32338 8.47849 8.98747 9.80756 10.34602 11.18292 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.015562 B = 0.003530 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.848006 B = 7929.115682 C = 9054.061553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 H 0.075 0.925 4 C 0.142 3.858 5 N -0.601 5.601 6 C -0.346 4.346 7 H 0.068 0.932 8 C -0.019 4.019 9 N -0.906 5.906 10 Si 1.060 2.940 11 H -0.291 1.291 12 H -0.295 1.295 13 H -0.289 1.289 14 C 0.142 3.858 15 C 0.130 3.870 16 H 0.095 0.905 17 N -0.713 5.713 18 C 0.520 3.480 19 O -0.525 6.525 20 C -0.141 4.141 21 C -0.083 4.083 22 C -0.160 4.160 23 C -0.162 4.162 24 C 0.455 3.545 25 F -0.185 7.185 26 F -0.181 7.181 27 F -0.183 7.183 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.024 0.976 32 H 0.030 0.970 33 H 0.267 0.733 34 H 0.057 0.943 35 H 0.024 0.976 36 H 0.397 0.603 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.574 8.483 13.156 18.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.130 4.130 3 H 0.094 0.906 4 C 0.016 3.984 5 N -0.328 5.328 6 C -0.473 4.473 7 H 0.086 0.914 8 C -0.222 4.222 9 N -0.546 5.546 10 Si 0.889 3.111 11 H -0.218 1.218 12 H -0.223 1.223 13 H -0.216 1.216 14 C 0.015 3.985 15 C 0.025 3.975 16 H 0.113 0.887 17 N -0.363 5.363 18 C 0.306 3.694 19 O -0.403 6.403 20 C -0.181 4.181 21 C -0.085 4.085 22 C -0.216 4.216 23 C -0.219 4.219 24 C 0.401 3.599 25 F -0.167 7.167 26 F -0.162 7.162 27 F -0.164 7.164 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.042 0.958 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.041 0.959 36 H 0.231 0.769 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.360 6.431 13.462 17.612 hybrid contribution -1.029 2.060 -0.123 2.306 sum -10.389 8.491 13.340 18.920 Atomic orbital electron populations 1.21739 0.94590 1.02051 1.01106 1.22427 0.95558 0.99209 0.95790 0.90649 1.21359 0.90561 0.92966 0.93561 1.44473 1.31988 1.51282 1.05081 1.19706 1.02096 1.22955 1.02534 0.91389 1.25656 0.91877 1.05094 0.99554 1.70742 1.35339 1.07796 1.40743 0.83643 0.75112 0.76351 0.75959 1.21753 1.22267 1.21554 1.21765 0.92017 0.98894 0.85817 1.22411 0.99418 0.92806 0.82866 0.88684 1.45904 1.74090 1.10212 1.06112 1.20062 0.76331 0.88938 0.84030 1.90611 1.49286 1.14942 1.85420 1.21742 1.05644 0.98552 0.92135 1.21507 1.01979 0.95299 0.89685 1.22187 0.93384 1.00500 1.05572 1.22208 0.94202 0.99702 1.05757 1.20689 0.73415 0.79894 0.85930 1.93151 1.53940 1.72848 1.96717 1.93157 1.96009 1.74221 1.52835 1.93169 1.49727 1.77478 1.96043 0.92984 0.92630 0.92361 0.95761 0.95181 0.92168 0.92455 0.95863 0.76888 0.87638 0.87886 0.87329 0.91622 0.92190 0.91883 0.91635 0.87126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.16 37.16 0.34 -1.35 16 2 C -0.11 -1.70 3.16 -88.78 -0.28 -1.98 16 3 H 0.08 1.06 8.00 -51.93 -0.42 0.64 16 4 C 0.14 2.84 6.85 -3.06 -0.02 2.82 16 5 N -0.60 -15.10 3.33 -170.07 -0.57 -15.66 16 6 C -0.35 -9.81 9.97 -15.06 -0.15 -9.96 16 7 H 0.07 1.93 8.02 -52.49 -0.42 1.51 16 8 C -0.02 -0.56 4.96 -17.43 -0.09 -0.64 16 9 N -0.91 -27.46 12.86 55.49 0.71 -26.74 16 10 Si 1.06 25.75 30.03 -169.99 -5.10 20.64 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.30 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 C 0.14 3.26 5.02 -2.53 -0.01 3.25 16 15 C 0.13 2.24 2.77 -65.78 -0.18 2.05 16 16 H 0.10 1.78 7.63 -51.93 -0.40 1.39 16 17 N -0.71 -9.54 5.23 -51.73 -0.27 -9.81 16 18 C 0.52 7.09 7.24 -10.99 -0.08 7.01 16 19 O -0.53 -8.89 11.09 5.55 0.06 -8.83 16 20 C -0.14 -1.43 4.53 -27.88 -0.13 -1.56 16 21 C -0.08 -0.91 0.33 -154.51 -0.05 -0.96 16 22 C -0.16 -1.71 7.93 37.16 0.29 -1.42 16 23 C -0.16 -1.97 7.93 37.16 0.29 -1.68 16 24 C 0.45 4.94 2.22 37.16 0.08 5.02 16 25 F -0.19 -1.96 16.27 2.25 0.04 -1.93 16 26 F -0.18 -2.07 16.28 2.25 0.04 -2.04 16 27 F -0.18 -2.07 16.28 2.25 0.04 -2.04 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 30 H 0.06 0.76 8.07 -51.93 -0.42 0.34 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.03 0.60 7.77 -51.93 -0.40 0.20 16 33 H 0.27 8.12 6.43 -40.82 -0.26 7.86 16 34 H 0.06 1.54 7.81 -51.93 -0.41 1.13 16 35 H 0.02 0.57 7.02 -51.93 -0.36 0.21 16 36 H 0.40 4.10 8.52 -40.82 -0.35 3.75 16 37 H 0.11 0.97 7.80 -51.93 -0.41 0.57 16 38 H 0.10 0.83 7.80 -51.93 -0.41 0.42 16 39 H 0.11 1.38 5.51 -51.93 -0.29 1.09 16 40 H 0.06 0.66 7.80 -51.93 -0.41 0.26 16 41 H 0.06 0.57 7.80 -51.93 -0.41 0.16 16 42 H 0.06 0.75 7.80 -51.93 -0.41 0.34 16 43 H 0.06 0.73 7.80 -51.93 -0.41 0.33 16 44 H 0.11 1.63 5.51 -51.93 -0.29 1.35 16 LS Contribution 356.30 15.07 5.37 5.37 Total: -1.00 -31.94 356.30 -6.17 -38.11 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -6.50 Total: 2.31 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 0.02 Total: 0.62 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: -0.12 Total: -52.22 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.06 Total: -8.83 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 0.11 Total: -6.00 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -5.10 Total: 20.64 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.94 -6.17 -38.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210684377.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.647 kcal (2) G-P(sol) polarization free energy of solvation -31.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds