Wall clock time and date at job start Tue Mar 31 2020 16:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.63808 * 2 1 4 4 C 1.54331 * 110.85313 * 236.82988 * 2 1 3 5 5 N 1.47028 * 107.26619 * 219.67245 * 4 2 1 6 6 C 1.36935 * 125.64445 * 178.85025 * 5 4 2 7 7 H 1.07996 * 120.00120 * 347.82302 * 6 5 4 8 8 C 1.38816 * 119.99635 * 167.82713 * 6 5 4 9 9 N 1.31621 * 119.99948 * 326.27381 * 8 6 5 10 10 Si 1.86802 * 119.99914 * 145.99645 * 8 6 5 11 11 H 1.48496 * 109.47113 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46970 * 120.00125 * 10 8 6 13 13 H 1.48501 * 109.47141 * 239.99794 * 10 8 6 14 14 C 1.47420 * 108.70211 * 358.58814 * 5 4 2 15 15 C 1.54910 * 104.83518 * 24.35267 * 14 5 4 16 16 H 1.09001 * 111.00579 * 81.06261 * 15 14 5 17 17 N 1.46494 * 111.00885 * 204.87717 * 15 14 5 18 18 C 1.34774 * 120.00450 * 273.54879 * 17 15 14 19 19 O 1.21284 * 119.99667 * 359.97438 * 18 17 15 20 20 C 1.50700 * 120.00161 * 179.97438 * 18 17 15 21 21 C 1.53005 * 109.46652 * 179.97438 * 20 18 17 22 22 C 1.52998 * 109.47315 * 299.99841 * 21 20 18 23 23 C 1.52997 * 109.47314 * 60.00351 * 21 20 18 24 24 C 1.53007 * 109.46903 * 180.02562 * 21 20 18 25 25 F 1.39897 * 109.46943 * 59.99937 * 24 21 20 26 26 F 1.39896 * 109.46924 * 179.97438 * 24 21 20 27 27 F 1.39900 * 109.47110 * 299.99995 * 24 21 20 28 28 H 1.08996 * 109.47499 * 296.86059 * 1 2 3 29 29 H 1.09008 * 109.46590 * 56.86439 * 1 2 3 30 30 H 1.09003 * 109.47165 * 176.85979 * 1 2 3 31 31 H 1.09002 * 109.99038 * 100.20390 * 4 2 1 32 32 H 1.09000 * 109.77959 * 339.03009 * 4 2 1 33 33 H 0.96996 * 119.99512 * 353.97663 * 9 8 6 34 34 H 1.09002 * 110.36697 * 143.19286 * 14 5 4 35 35 H 1.08996 * 110.36788 * 265.51898 * 14 5 4 36 36 H 0.97004 * 120.00188 * 93.54486 * 17 15 14 37 37 H 1.09000 * 109.47046 * 299.99717 * 20 18 17 38 38 H 1.08993 * 109.47129 * 60.00296 * 20 18 17 39 39 H 1.09004 * 109.47082 * 60.00282 * 22 21 20 40 40 H 1.09001 * 109.47433 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.47283 * 300.00053 * 22 21 20 42 42 H 1.09000 * 109.47538 * 59.99523 * 23 21 20 43 43 H 1.09002 * 109.47284 * 180.02562 * 23 21 20 44 44 H 1.09004 * 109.46861 * 299.99582 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0794 -0.7891 -1.2072 5 7 3.2446 -1.5520 -0.7362 6 6 4.0044 -2.3995 -1.4975 7 1 3.6580 -2.7058 -2.4734 8 6 5.2198 -2.8649 -1.0147 9 7 5.9613 -2.0948 -0.2469 10 14 5.7993 -4.5870 -1.4483 11 1 4.7885 -5.2462 -2.3136 12 1 7.0932 -4.5061 -2.1727 13 1 5.9774 -5.3774 -0.2038 14 6 3.4633 -1.2486 0.6898 15 6 2.0789 -0.7933 1.2153 16 1 1.4451 -1.6510 1.4404 17 7 2.2212 0.0730 2.3880 18 6 2.3153 -0.4685 3.6185 19 8 2.2816 -1.6732 3.7550 20 6 2.4623 0.4227 4.8248 21 6 2.5464 -0.4377 6.0873 22 6 1.2709 -1.2719 6.2218 23 6 3.7567 -1.3685 5.9904 24 6 2.6950 0.4671 7.3121 25 9 1.5879 1.3179 7.4004 26 9 2.7713 -0.3195 8.4664 27 9 3.8610 1.2304 7.1894 28 1 -0.3634 0.4643 0.9167 29 1 -0.3633 0.5618 -0.8606 30 1 -0.3634 -1.0261 -0.0563 31 1 2.3816 -0.1004 -1.9962 32 1 1.3156 -1.4715 -1.5803 33 1 5.7023 -1.1734 -0.0895 34 1 3.7960 -2.1405 1.2208 35 1 4.1930 -0.4464 0.7994 36 1 2.2479 1.0365 2.2789 37 1 3.3708 1.0173 4.7287 38 1 1.5998 1.0855 4.8941 39 1 1.1646 -1.9165 5.3493 40 1 1.3306 -1.8845 7.1214 41 1 0.4086 -0.6087 6.2909 42 1 4.6654 -0.7742 5.8945 43 1 3.8164 -1.9818 6.8896 44 1 3.6504 -2.0131 5.1178 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210684377.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:27 Heat of formation + Delta-G solvation = -199.077007 kcal Electronic energy + Delta-G solvation = -29028.690363 eV Core-core repulsion = 24565.399313 eV Total energy + Delta-G solvation = -4463.291050 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -51.15629 -48.61671 -48.60086 -41.38508 -39.63784 -37.10409 -35.77546 -34.45431 -32.17305 -30.53090 -28.66175 -28.39644 -27.22474 -27.11045 -25.30888 -22.77338 -21.71853 -21.67606 -20.74800 -19.59874 -19.35650 -19.35545 -18.51680 -17.49359 -17.35037 -16.58792 -16.32820 -15.90872 -15.69815 -15.62579 -15.46741 -15.16572 -15.03782 -14.80102 -14.78524 -14.72212 -14.61077 -14.51051 -14.42138 -14.10237 -13.67402 -13.40520 -13.00017 -12.96209 -12.70168 -12.67177 -12.46528 -12.40376 -12.20543 -12.15793 -12.08526 -12.04018 -11.89172 -11.67733 -11.56879 -10.68865 -10.48215 -10.06018 -9.06612 -8.42315 -5.31344 1.53896 1.56538 1.62402 1.62700 1.78859 2.10403 2.60671 2.75825 2.96700 3.02328 3.12487 3.48436 3.52974 3.58720 3.74590 3.84936 3.88788 3.97630 4.03892 4.34344 4.43765 4.45872 4.48863 4.54538 4.65881 4.76590 4.79748 4.80538 4.85423 4.95546 4.97746 5.03960 5.05311 5.18130 5.28388 5.30837 5.40656 5.58104 5.65964 6.26474 6.54124 6.84545 7.26642 7.67373 8.24973 8.91929 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.015562 B = 0.003530 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.848006 B = 7929.115682 C = 9054.061553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.092 4.092 3 H 0.098 0.902 4 C 0.132 3.868 5 N -0.626 5.626 6 C -0.355 4.355 7 H 0.063 0.937 8 C -0.073 4.073 9 N -0.934 5.934 10 Si 1.109 2.891 11 H -0.271 1.271 12 H -0.287 1.287 13 H -0.292 1.292 14 C 0.151 3.849 15 C 0.151 3.849 16 H 0.080 0.920 17 N -0.703 5.703 18 C 0.517 3.483 19 O -0.561 6.561 20 C -0.133 4.133 21 C -0.082 4.082 22 C -0.156 4.156 23 C -0.160 4.160 24 C 0.462 3.538 25 F -0.179 7.179 26 F -0.184 7.184 27 F -0.185 7.185 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.023 0.977 32 H 0.033 0.967 33 H 0.254 0.746 34 H 0.005 0.995 35 H 0.006 0.994 36 H 0.417 0.583 37 H 0.120 0.880 38 H 0.136 0.864 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.424 10.093 13.761 21.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.111 4.111 3 H 0.116 0.884 4 C 0.007 3.993 5 N -0.353 5.353 6 C -0.483 4.483 7 H 0.081 0.919 8 C -0.270 4.270 9 N -0.576 5.576 10 Si 0.933 3.067 11 H -0.196 1.196 12 H -0.214 1.214 13 H -0.219 1.219 14 C 0.024 3.976 15 C 0.045 3.955 16 H 0.098 0.902 17 N -0.355 5.355 18 C 0.305 3.695 19 O -0.440 6.440 20 C -0.172 4.172 21 C -0.084 4.084 22 C -0.212 4.212 23 C -0.217 4.217 24 C 0.408 3.592 25 F -0.161 7.161 26 F -0.166 7.166 27 F -0.166 7.166 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.041 0.959 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.254 0.746 37 H 0.138 0.862 38 H 0.154 0.846 39 H 0.106 0.894 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.246 8.091 14.061 19.740 hybrid contribution -0.462 1.558 -0.322 1.657 sum -11.708 9.649 13.739 20.469 Atomic orbital electron populations 1.21695 0.91411 1.02197 1.03342 1.22364 0.97887 0.98947 0.91898 0.88426 1.21612 0.88870 0.93048 0.95732 1.44742 1.32669 1.51880 1.05993 1.19973 1.02228 1.23394 1.02719 0.91926 1.26981 0.92562 1.07795 0.99628 1.70857 1.36379 1.07454 1.42930 0.82982 0.75522 0.72208 0.75940 1.19605 1.21375 1.21865 1.21602 0.95091 0.96037 0.84857 1.21891 0.95169 0.93548 0.84935 0.90232 1.45710 1.73989 1.10804 1.04964 1.20714 0.75117 0.88909 0.84808 1.90628 1.50500 1.16889 1.85974 1.21766 1.07843 0.97986 0.89620 1.21464 1.01345 0.95294 0.90309 1.22117 0.93874 1.00543 1.04707 1.22120 0.95114 0.99768 1.04692 1.20503 0.73462 0.79725 0.85500 1.93165 1.53607 1.72619 1.96673 1.93154 1.96031 1.74381 1.53019 1.93171 1.49910 1.77486 1.96029 0.90492 0.90645 0.93302 0.95909 0.94892 0.93652 0.97659 0.97659 0.74597 0.86179 0.84559 0.89449 0.91293 0.90483 0.91795 0.91044 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.16 71.98 0.66 -2.05 16 2 C -0.09 -2.62 3.16 -9.60 -0.03 -2.65 16 3 H 0.10 2.40 8.00 -2.39 -0.02 2.38 16 4 C 0.13 5.24 6.85 86.73 0.59 5.84 16 5 N -0.63 -32.29 3.33 -691.97 -2.30 -34.59 16 6 C -0.36 -20.70 9.97 84.03 0.84 -19.86 16 7 H 0.06 3.62 8.02 -2.91 -0.02 3.60 16 8 C -0.07 -4.31 4.96 84.86 0.42 -3.89 16 9 N -0.93 -58.84 12.86 21.65 0.28 -58.56 16 10 Si 1.11 53.12 30.03 68.60 2.06 55.18 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 13 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 14 C 0.15 7.23 5.02 86.86 0.44 7.67 16 15 C 0.15 5.14 2.77 46.39 0.13 5.27 16 16 H 0.08 3.00 7.63 -2.39 -0.02 2.99 16 17 N -0.70 -17.72 5.23 -435.97 -2.28 -20.00 16 18 C 0.52 13.59 7.24 87.66 0.63 14.22 16 19 O -0.56 -19.40 11.09 -3.04 -0.03 -19.43 16 20 C -0.13 -2.38 4.53 29.85 0.14 -2.24 16 21 C -0.08 -1.67 0.33 -52.18 -0.02 -1.69 16 22 C -0.16 -3.12 7.93 71.98 0.57 -2.55 16 23 C -0.16 -3.90 7.93 71.98 0.57 -3.33 16 24 C 0.46 8.98 2.22 71.98 0.16 9.14 16 25 F -0.18 -3.24 16.27 44.97 0.73 -2.50 16 26 F -0.18 -3.90 16.28 44.97 0.73 -3.16 16 27 F -0.18 -3.78 16.28 44.97 0.73 -3.05 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.05 1.14 8.07 -2.39 -0.02 1.12 16 31 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.03 1.29 7.77 -2.39 -0.02 1.27 16 33 H 0.25 16.17 6.43 -92.71 -0.60 15.57 16 34 H 0.00 0.28 7.81 -2.39 -0.02 0.26 16 35 H 0.01 0.29 7.02 -2.39 -0.02 0.27 16 36 H 0.42 7.31 8.52 -92.71 -0.79 6.52 16 37 H 0.12 1.88 7.80 -2.39 -0.02 1.86 16 38 H 0.14 1.60 7.80 -2.39 -0.02 1.58 16 39 H 0.09 2.20 5.51 -2.38 -0.01 2.19 16 40 H 0.07 1.31 7.80 -2.39 -0.02 1.29 16 41 H 0.08 1.26 7.80 -2.39 -0.02 1.24 16 42 H 0.06 1.50 7.80 -2.39 -0.02 1.48 16 43 H 0.07 1.60 7.80 -2.39 -0.02 1.58 16 44 H 0.08 2.54 5.51 -2.38 -0.01 2.52 16 Total: -1.00 -73.55 356.30 5.42 -68.13 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.40 Total: 14.09 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 5.10 Total: 3.90 kcal Atomic # 7 Polarization: -108.85 SS G_CDS: -4.30 Total: -113.15 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.03 Total: -19.43 kcal Atomic # 9 Polarization: -10.91 SS G_CDS: 2.20 Total: -8.71 kcal Atomic # 14 Polarization: 53.12 SS G_CDS: 2.06 Total: 55.18 kcal Total: -73.55 5.42 -68.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210684377.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.948 kcal (2) G-P(sol) polarization free energy of solvation -73.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds