Wall clock time and date at job start Tue Mar 31 2020 16:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.88143 * 2 1 4 4 C 1.54910 * 111.00110 * 236.12039 * 2 1 3 5 5 N 1.47419 * 104.83132 * 204.91308 * 4 2 1 6 6 C 1.34782 * 125.64850 * 204.09309 * 5 4 2 7 7 O 1.21279 * 119.99781 * 353.22492 * 6 5 4 8 8 C 1.50696 * 119.99931 * 173.21920 * 6 5 4 9 9 C 1.53000 * 109.47321 * 295.71543 * 8 6 5 10 10 C 1.53004 * 109.47195 * 55.71580 * 8 6 5 11 11 C 1.52999 * 109.47409 * 175.71375 * 8 6 5 12 12 C 1.52995 * 109.47526 * 186.40873 * 11 8 6 13 13 F 1.39899 * 109.46982 * 66.59479 * 12 11 8 14 14 F 1.39905 * 109.46986 * 186.59470 * 12 11 8 15 15 F 1.39901 * 109.47306 * 306.59767 * 12 11 8 16 16 C 1.47023 * 108.70599 * 24.12792 * 5 4 2 17 17 C 1.54324 * 107.40003 * 358.86513 * 16 5 4 18 18 H 1.08998 * 110.72554 * 96.24411 * 17 16 5 19 19 N 1.46501 * 110.72269 * 219.51916 * 17 16 5 20 20 C 1.36938 * 119.99980 * 273.54852 * 19 17 16 21 21 H 1.08001 * 119.99718 * 359.97438 * 20 19 17 22 22 C 1.38806 * 119.99693 * 179.97438 * 20 19 17 23 23 N 1.31627 * 119.99668 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 120.00510 * 359.97438 * 22 20 19 25 25 H 1.48493 * 109.47138 * 89.99844 * 24 22 20 26 26 H 1.48501 * 109.46861 * 210.00121 * 24 22 20 27 27 H 1.48503 * 109.46491 * 330.00011 * 24 22 20 28 28 H 1.08997 * 109.47028 * 182.42997 * 1 2 3 29 29 H 1.09011 * 109.46823 * 302.42394 * 1 2 3 30 30 H 1.08994 * 109.47797 * 62.42791 * 1 2 3 31 31 H 1.08999 * 110.36479 * 86.07358 * 4 2 1 32 32 H 1.08996 * 110.46107 * 323.80416 * 4 2 1 33 33 H 1.08999 * 109.47200 * 52.18395 * 9 8 6 34 34 H 1.09001 * 109.47089 * 172.18341 * 9 8 6 35 35 H 1.09003 * 109.47430 * 292.17886 * 9 8 6 36 36 H 1.08997 * 109.46783 * 60.23201 * 10 8 6 37 37 H 1.08999 * 109.47064 * 180.23438 * 10 8 6 38 38 H 1.08996 * 109.46909 * 300.23336 * 10 8 6 39 39 H 1.09003 * 109.46864 * 306.41393 * 11 8 6 40 40 H 1.09008 * 109.46725 * 66.40495 * 11 8 6 41 41 H 1.09001 * 109.88121 * 118.35493 * 16 5 4 42 42 H 1.09001 * 109.88301 * 239.37013 * 16 5 4 43 43 H 0.97005 * 119.99857 * 93.53959 * 19 17 16 44 44 H 0.96997 * 119.99599 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0852 -0.8062 -1.2007 5 7 3.4270 -1.2427 -0.7739 6 6 4.4476 -1.5609 -1.5948 7 8 4.2669 -1.6186 -2.7927 8 6 5.8131 -1.8450 -1.0242 9 6 6.3619 -0.5801 -0.3610 10 6 5.7089 -2.9621 0.0160 11 6 6.7550 -2.2811 -2.1483 12 6 8.0926 -2.7221 -1.5507 13 9 7.9053 -3.8849 -0.7957 14 9 9.0027 -2.9773 -2.5822 15 9 8.5929 -1.7073 -0.7277 16 6 3.4675 -1.2743 0.6954 17 6 2.0880 -0.8069 1.2052 18 1 1.4484 -1.6615 1.4258 19 7 2.2343 0.0506 2.3840 20 6 2.3119 -0.5082 3.6318 21 1 2.2648 -1.5810 3.7469 22 6 2.4510 0.3043 4.7486 23 7 2.5251 -0.2328 5.9480 24 14 2.5332 2.1599 4.5495 25 1 1.1620 2.7260 4.6160 26 1 3.3610 2.7383 5.6382 27 1 3.1419 2.4901 3.2358 28 1 -0.3633 -1.0267 0.0436 29 1 -0.3633 0.5511 0.8676 30 1 -0.3634 0.4756 -0.9109 31 1 2.1558 -0.1712 -2.0838 32 1 1.4524 -1.6698 -1.4050 33 1 5.6267 -0.1909 0.3433 34 1 7.2831 -0.8190 0.1704 35 1 6.5670 0.1706 -1.1242 36 1 5.3219 -3.8644 -0.4574 37 1 6.6959 -3.1647 0.4317 38 1 5.0347 -2.6531 0.8147 39 1 6.3089 -3.1127 -2.6939 40 1 6.9189 -1.4460 -2.8294 41 1 3.6651 -2.2897 1.0390 42 1 4.2445 -0.6021 1.0594 43 1 2.2763 1.0142 2.2806 44 1 2.6227 0.3350 6.7284 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216226473.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:34 Heat of formation + Delta-G solvation = -161.551883 kcal Electronic energy + Delta-G solvation = -29394.528711 eV Core-core repulsion = 24932.864873 eV Total energy + Delta-G solvation = -4461.663838 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.38430 -47.82991 -47.80973 -40.55154 -38.03552 -35.98263 -34.30064 -32.63506 -31.14930 -29.67684 -28.12971 -27.49906 -26.40373 -24.58619 -23.74764 -22.38415 -20.92780 -20.29176 -19.29279 -18.76422 -18.45365 -17.63543 -17.08595 -16.40754 -16.19585 -15.54868 -15.04801 -14.91380 -14.67230 -14.45681 -14.40764 -14.24470 -14.19671 -13.91469 -13.76951 -13.56527 -13.25767 -13.20629 -12.69321 -12.63135 -12.50234 -12.26691 -12.07979 -11.89711 -11.69662 -11.60055 -11.33809 -11.26684 -11.14873 -11.05051 -10.66420 -10.61484 -10.43176 -10.02773 -9.73628 -9.66526 -9.07195 -8.47451 -7.46635 -5.90706 -3.29239 2.52447 2.61333 3.04354 3.27493 3.30475 3.37326 3.66314 3.81504 3.89412 4.35303 4.46366 4.54224 4.62822 4.77177 4.93005 4.95157 4.98447 5.24841 5.32363 5.36335 5.45568 5.46508 5.59116 5.62545 5.66259 5.69004 5.72315 5.78163 5.79682 5.96662 5.99282 6.10107 6.17523 6.25960 6.37256 6.42061 6.42282 6.68166 7.60416 7.82842 8.14794 8.27783 9.03955 9.76245 9.93954 11.26789 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.014263 B = 0.004021 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.621948 B = 6962.133865 C = 8177.068378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.118 4.118 3 H 0.081 0.919 4 C 0.115 3.885 5 N -0.607 5.607 6 C 0.544 3.456 7 O -0.553 6.553 8 C -0.075 4.075 9 C -0.171 4.171 10 C -0.185 4.185 11 C -0.142 4.142 12 C 0.454 3.546 13 F -0.177 7.177 14 F -0.186 7.186 15 F -0.176 7.176 16 C 0.059 3.941 17 C 0.182 3.818 18 H 0.075 0.925 19 N -0.735 5.735 20 C -0.255 4.255 21 H 0.093 0.907 22 C 0.012 3.988 23 N -0.927 5.927 24 Si 0.882 3.118 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.277 1.277 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.364 0.636 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.279 -3.026 -15.900 17.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.138 4.138 3 H 0.100 0.900 4 C -0.008 4.008 5 N -0.340 5.340 6 C 0.332 3.668 7 O -0.432 6.432 8 C -0.078 4.078 9 C -0.228 4.228 10 C -0.242 4.242 11 C -0.181 4.181 12 C 0.400 3.600 13 F -0.159 7.159 14 F -0.167 7.167 15 F -0.157 7.157 16 C -0.066 4.066 17 C 0.070 3.930 18 H 0.093 0.907 19 N -0.377 5.377 20 C -0.384 4.384 21 H 0.110 0.890 22 C -0.184 4.184 23 N -0.574 5.574 24 Si 0.712 3.288 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.203 1.203 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.198 0.802 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.269 -3.239 -16.312 17.773 hybrid contribution 0.400 1.266 0.134 1.334 sum 6.669 -1.974 -16.178 17.610 Atomic orbital electron populations 1.21620 0.93596 1.02234 1.01771 1.22711 0.96568 0.99642 0.94835 0.90045 1.22254 0.82802 0.98184 0.97514 1.48388 1.11800 1.65722 1.08065 1.19807 0.84873 0.76351 0.85745 1.90673 1.84192 1.53295 1.15007 1.20586 0.92401 0.99116 0.95723 1.22508 1.03633 0.94984 1.01685 1.22769 1.05490 0.96717 0.99196 1.22731 0.89901 1.06239 0.99195 1.20583 0.87957 0.75122 0.76297 1.93143 1.95092 1.50728 1.76924 1.93186 1.70346 1.94270 1.58933 1.93102 1.89341 1.59816 1.73479 1.23764 1.03080 1.02207 0.77585 1.21292 0.91910 0.93807 0.85998 0.90666 1.42702 1.88610 1.04063 1.02321 1.19045 1.43735 0.94010 0.81624 0.88959 1.24665 1.01336 0.97326 0.95100 1.69696 1.55968 1.34347 0.97377 0.86607 0.77877 0.87234 0.77093 1.20936 1.21628 1.20306 0.92392 0.91542 0.93014 0.90933 0.91349 0.90383 0.88996 0.92006 0.91770 0.89929 0.88960 0.86619 0.86739 0.90512 0.90006 0.80240 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 9.30 37.16 0.35 -1.29 16 2 C -0.12 -1.60 3.26 -88.34 -0.29 -1.89 16 3 H 0.08 1.15 8.01 -51.93 -0.42 0.73 16 4 C 0.12 1.51 6.35 -2.53 -0.02 1.50 16 5 N -0.61 -8.59 3.31 -170.53 -0.56 -9.15 16 6 C 0.54 7.83 6.57 -10.99 -0.07 7.75 16 7 O -0.55 -9.24 16.25 5.56 0.09 -9.15 16 8 C -0.08 -0.90 0.52 -155.66 -0.08 -0.98 16 9 C -0.17 -2.02 7.64 37.16 0.28 -1.73 16 10 C -0.19 -2.17 7.07 37.16 0.26 -1.90 16 11 C -0.14 -1.49 3.88 -26.73 -0.10 -1.60 16 12 C 0.45 4.78 2.88 37.16 0.11 4.89 16 13 F -0.18 -1.96 13.99 2.25 0.03 -1.93 16 14 F -0.19 -2.00 17.32 2.25 0.04 -1.96 16 15 F -0.18 -1.94 13.66 2.25 0.03 -1.91 16 16 C 0.06 0.88 4.83 -3.06 -0.01 0.87 16 17 C 0.18 3.00 3.08 -65.96 -0.20 2.79 16 18 H 0.08 1.28 8.00 -51.93 -0.42 0.87 16 19 N -0.74 -15.26 4.98 -51.52 -0.26 -15.52 16 20 C -0.25 -6.48 10.46 -15.06 -0.16 -6.64 16 21 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 22 C 0.01 0.34 5.50 -17.43 -0.10 0.24 16 23 N -0.93 -27.45 13.97 55.49 0.78 -26.67 16 24 Si 0.88 20.63 27.74 -169.99 -4.71 15.91 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.28 -6.05 6.52 56.52 0.37 -5.68 16 28 H 0.06 0.67 8.11 -51.93 -0.42 0.25 16 29 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 32 H 0.07 0.85 8.04 -51.93 -0.42 0.43 16 33 H 0.08 1.02 5.09 -51.93 -0.26 0.75 16 34 H 0.09 1.04 5.42 -51.93 -0.28 0.75 16 35 H 0.06 0.68 8.11 -51.93 -0.42 0.26 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.93 5.54 -51.93 -0.29 0.64 16 38 H 0.09 1.17 3.97 -51.93 -0.21 0.96 16 39 H 0.12 1.18 7.97 -51.93 -0.41 0.77 16 40 H 0.11 1.13 8.12 -51.92 -0.42 0.71 16 41 H 0.08 1.13 5.70 -51.93 -0.30 0.84 16 42 H 0.08 1.31 5.40 -51.93 -0.28 1.03 16 43 H 0.36 7.54 5.58 -40.82 -0.23 7.31 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 345.26 15.07 5.20 5.20 Total: -1.00 -29.32 345.26 -5.45 -34.77 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -6.05 Total: 8.40 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -0.03 Total: 2.01 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.05 Total: -51.35 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.10 Total: -5.81 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.71 Total: 15.91 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.32 -5.45 -34.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216226473.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.786 kcal (2) G-P(sol) polarization free energy of solvation -29.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds