Wall clock time and date at job start Tue Mar 31 2020 16:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.88143 * 2 1 4 4 C 1.54910 * 111.00110 * 236.12039 * 2 1 3 5 5 N 1.47419 * 104.83132 * 204.91308 * 4 2 1 6 6 C 1.34782 * 125.64850 * 204.09309 * 5 4 2 7 7 O 1.21279 * 119.99781 * 353.22492 * 6 5 4 8 8 C 1.50696 * 119.99931 * 173.21920 * 6 5 4 9 9 C 1.53000 * 109.47321 * 295.71543 * 8 6 5 10 10 C 1.53004 * 109.47195 * 55.71580 * 8 6 5 11 11 C 1.52999 * 109.47409 * 175.71375 * 8 6 5 12 12 C 1.52995 * 109.47526 * 186.40873 * 11 8 6 13 13 F 1.39899 * 109.46982 * 66.59479 * 12 11 8 14 14 F 1.39905 * 109.46986 * 186.59470 * 12 11 8 15 15 F 1.39901 * 109.47306 * 306.59767 * 12 11 8 16 16 C 1.47023 * 108.70599 * 24.12792 * 5 4 2 17 17 C 1.54324 * 107.40003 * 358.86513 * 16 5 4 18 18 H 1.08998 * 110.72554 * 96.24411 * 17 16 5 19 19 N 1.46501 * 110.72269 * 219.51916 * 17 16 5 20 20 C 1.36938 * 119.99980 * 273.54852 * 19 17 16 21 21 H 1.08001 * 119.99718 * 359.97438 * 20 19 17 22 22 C 1.38806 * 119.99693 * 179.97438 * 20 19 17 23 23 N 1.31627 * 119.99668 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 120.00510 * 359.97438 * 22 20 19 25 25 H 1.48493 * 109.47138 * 89.99844 * 24 22 20 26 26 H 1.48501 * 109.46861 * 210.00121 * 24 22 20 27 27 H 1.48503 * 109.46491 * 330.00011 * 24 22 20 28 28 H 1.08997 * 109.47028 * 182.42997 * 1 2 3 29 29 H 1.09011 * 109.46823 * 302.42394 * 1 2 3 30 30 H 1.08994 * 109.47797 * 62.42791 * 1 2 3 31 31 H 1.08999 * 110.36479 * 86.07358 * 4 2 1 32 32 H 1.08996 * 110.46107 * 323.80416 * 4 2 1 33 33 H 1.08999 * 109.47200 * 52.18395 * 9 8 6 34 34 H 1.09001 * 109.47089 * 172.18341 * 9 8 6 35 35 H 1.09003 * 109.47430 * 292.17886 * 9 8 6 36 36 H 1.08997 * 109.46783 * 60.23201 * 10 8 6 37 37 H 1.08999 * 109.47064 * 180.23438 * 10 8 6 38 38 H 1.08996 * 109.46909 * 300.23336 * 10 8 6 39 39 H 1.09003 * 109.46864 * 306.41393 * 11 8 6 40 40 H 1.09008 * 109.46725 * 66.40495 * 11 8 6 41 41 H 1.09001 * 109.88121 * 118.35493 * 16 5 4 42 42 H 1.09001 * 109.88301 * 239.37013 * 16 5 4 43 43 H 0.97005 * 119.99857 * 93.53959 * 19 17 16 44 44 H 0.96997 * 119.99599 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0852 -0.8062 -1.2007 5 7 3.4270 -1.2427 -0.7739 6 6 4.4476 -1.5609 -1.5948 7 8 4.2669 -1.6186 -2.7927 8 6 5.8131 -1.8450 -1.0242 9 6 6.3619 -0.5801 -0.3610 10 6 5.7089 -2.9621 0.0160 11 6 6.7550 -2.2811 -2.1483 12 6 8.0926 -2.7221 -1.5507 13 9 7.9053 -3.8849 -0.7957 14 9 9.0027 -2.9773 -2.5822 15 9 8.5929 -1.7073 -0.7277 16 6 3.4675 -1.2743 0.6954 17 6 2.0880 -0.8069 1.2052 18 1 1.4484 -1.6615 1.4258 19 7 2.2343 0.0506 2.3840 20 6 2.3119 -0.5082 3.6318 21 1 2.2648 -1.5810 3.7469 22 6 2.4510 0.3043 4.7486 23 7 2.5251 -0.2328 5.9480 24 14 2.5332 2.1599 4.5495 25 1 1.1620 2.7260 4.6160 26 1 3.3610 2.7383 5.6382 27 1 3.1419 2.4901 3.2358 28 1 -0.3633 -1.0267 0.0436 29 1 -0.3633 0.5511 0.8676 30 1 -0.3634 0.4756 -0.9109 31 1 2.1558 -0.1712 -2.0838 32 1 1.4524 -1.6698 -1.4050 33 1 5.6267 -0.1909 0.3433 34 1 7.2831 -0.8190 0.1704 35 1 6.5670 0.1706 -1.1242 36 1 5.3219 -3.8644 -0.4574 37 1 6.6959 -3.1647 0.4317 38 1 5.0347 -2.6531 0.8147 39 1 6.3089 -3.1127 -2.6939 40 1 6.9189 -1.4460 -2.8294 41 1 3.6651 -2.2897 1.0390 42 1 4.2445 -0.6021 1.0594 43 1 2.2763 1.0142 2.2806 44 1 2.6227 0.3350 6.7284 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216226473.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:33 Heat of formation + Delta-G solvation = -178.993707 kcal Electronic energy + Delta-G solvation = -29395.285045 eV Core-core repulsion = 24932.864873 eV Total energy + Delta-G solvation = -4462.420173 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -51.24280 -48.68504 -48.67347 -41.69316 -39.26495 -37.03358 -35.96577 -33.95924 -32.87614 -30.59045 -29.54315 -28.47871 -27.45490 -25.92505 -25.01513 -23.59068 -22.17707 -21.60318 -20.31049 -19.62163 -19.49096 -19.40119 -17.98509 -17.61073 -17.37196 -16.64844 -16.43701 -15.97581 -15.85922 -15.55985 -15.42827 -15.36400 -15.10958 -14.93014 -14.83318 -14.77895 -14.66830 -14.29772 -14.21862 -13.80713 -13.59067 -13.27467 -13.18635 -13.15780 -12.92523 -12.85836 -12.57840 -12.36588 -12.30808 -12.15933 -12.10265 -11.89776 -11.82965 -11.70497 -11.33349 -10.99244 -10.73885 -9.66123 -9.32500 -7.98838 -5.33772 1.41836 1.43920 1.47015 1.51009 1.61774 1.99751 2.51251 2.78438 2.91565 3.05206 3.27358 3.32252 3.52774 3.61215 3.70790 3.75675 3.83469 3.97632 4.13356 4.25019 4.37195 4.38695 4.50336 4.59032 4.62766 4.68912 4.73585 4.76500 4.78392 4.90951 4.93078 5.07804 5.09014 5.20834 5.24586 5.31144 5.36183 5.49491 5.81327 6.24434 6.44209 6.99850 7.10118 7.84015 8.02332 9.22004 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.014263 B = 0.004021 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.621948 B = 6962.133865 C = 8177.068378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.105 4.105 3 H 0.082 0.918 4 C 0.116 3.884 5 N -0.607 5.607 6 C 0.544 3.456 7 O -0.574 6.574 8 C -0.072 4.072 9 C -0.168 4.168 10 C -0.182 4.182 11 C -0.137 4.137 12 C 0.459 3.541 13 F -0.181 7.181 14 F -0.186 7.186 15 F -0.178 7.178 16 C 0.070 3.930 17 C 0.172 3.828 18 H 0.069 0.931 19 N -0.737 5.737 20 C -0.228 4.228 21 H 0.064 0.936 22 C -0.055 4.055 23 N -0.981 5.981 24 Si 0.946 3.054 25 H -0.281 1.281 26 H -0.302 1.302 27 H -0.250 1.250 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.367 0.633 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.436 -2.233 -18.073 19.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.125 4.125 3 H 0.100 0.900 4 C -0.006 4.006 5 N -0.339 5.339 6 C 0.333 3.667 7 O -0.455 6.455 8 C -0.075 4.075 9 C -0.225 4.225 10 C -0.238 4.238 11 C -0.176 4.176 12 C 0.406 3.594 13 F -0.162 7.162 14 F -0.167 7.167 15 F -0.160 7.160 16 C -0.055 4.055 17 C 0.062 3.938 18 H 0.087 0.913 19 N -0.379 5.379 20 C -0.358 4.358 21 H 0.082 0.918 22 C -0.247 4.247 23 N -0.631 5.631 24 Si 0.774 3.226 25 H -0.207 1.207 26 H -0.229 1.229 27 H -0.175 1.175 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.201 0.799 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.419 -2.453 -18.557 19.789 hybrid contribution 0.333 0.908 0.732 1.213 sum 6.752 -1.545 -17.825 19.124 Atomic orbital electron populations 1.21609 0.92272 1.02670 1.02378 1.22630 0.97593 0.99142 0.93158 0.89971 1.22327 0.82365 0.98620 0.97317 1.48397 1.12376 1.65618 1.07482 1.20139 0.85465 0.75701 0.85400 1.90665 1.84623 1.54311 1.15864 1.20577 0.91495 0.99308 0.96168 1.22489 1.03374 0.95008 1.01628 1.22732 1.05498 0.96801 0.98801 1.22701 0.89420 1.06763 0.98698 1.20522 0.87891 0.74903 0.76132 1.93138 1.95099 1.50937 1.77029 1.93188 1.70350 1.94260 1.58925 1.93096 1.89382 1.59924 1.73585 1.23451 1.01614 1.02145 0.78262 1.21477 0.92854 0.93713 0.85731 0.91271 1.42629 1.88702 1.04612 1.01934 1.18998 1.40615 0.92800 0.83434 0.91801 1.25383 1.02576 1.01963 0.94789 1.69870 1.58994 1.35911 0.98312 0.85555 0.77753 0.81584 0.77723 1.20684 1.22916 1.17482 0.91926 0.92902 0.90607 0.90240 0.90311 0.91686 0.88467 0.91222 0.91326 0.89427 0.90097 0.86179 0.85868 0.90309 0.90648 0.79876 0.93459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.30 71.98 0.67 -2.19 16 2 C -0.11 -2.63 3.26 -9.31 -0.03 -2.66 16 3 H 0.08 2.08 8.01 -2.39 -0.02 2.06 16 4 C 0.12 2.76 6.35 86.86 0.55 3.31 16 5 N -0.61 -16.02 3.31 -811.81 -2.68 -18.71 16 6 C 0.54 14.61 6.57 87.65 0.58 15.18 16 7 O -0.57 -18.00 16.25 -3.03 -0.05 -18.05 16 8 C -0.07 -1.61 0.52 -52.93 -0.03 -1.64 16 9 C -0.17 -3.68 7.64 71.98 0.55 -3.13 16 10 C -0.18 -4.01 7.07 71.98 0.51 -3.50 16 11 C -0.14 -2.61 3.88 30.59 0.12 -2.49 16 12 C 0.46 8.83 2.88 71.98 0.21 9.04 16 13 F -0.18 -3.70 13.99 44.97 0.63 -3.07 16 14 F -0.19 -3.67 17.32 44.97 0.78 -2.89 16 15 F -0.18 -3.62 13.66 44.97 0.61 -3.00 16 16 C 0.07 2.03 4.83 86.73 0.42 2.45 16 17 C 0.17 5.47 3.08 46.27 0.14 5.61 16 18 H 0.07 2.30 8.00 -2.39 -0.02 2.28 16 19 N -0.74 -29.80 4.98 -316.92 -1.58 -31.38 16 20 C -0.23 -11.65 10.46 84.03 0.88 -10.78 16 21 H 0.06 3.59 8.06 -2.91 -0.02 3.57 16 22 C -0.06 -3.02 5.50 84.86 0.47 -2.56 16 23 N -0.98 -59.64 13.97 21.65 0.30 -59.33 16 24 Si 0.95 42.46 27.74 68.60 1.90 44.37 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 27 H -0.25 -9.98 6.52 99.48 0.65 -9.33 16 28 H 0.06 1.30 8.11 -2.39 -0.02 1.28 16 29 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 1.84 8.11 -2.39 -0.02 1.82 16 32 H 0.08 1.74 8.04 -2.39 -0.02 1.72 16 33 H 0.06 1.60 5.09 -2.39 -0.01 1.59 16 34 H 0.10 2.03 5.42 -2.39 -0.01 2.02 16 35 H 0.07 1.40 8.11 -2.39 -0.02 1.38 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.09 1.86 5.54 -2.39 -0.01 1.84 16 38 H 0.08 1.98 3.97 -2.39 -0.01 1.97 16 39 H 0.12 2.22 7.97 -2.39 -0.02 2.20 16 40 H 0.12 2.15 8.12 -2.38 -0.02 2.14 16 41 H 0.08 2.27 5.70 -2.39 -0.01 2.26 16 42 H 0.08 2.33 5.40 -2.39 -0.01 2.32 16 43 H 0.37 14.47 5.58 -92.70 -0.52 13.95 16 44 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -62.62 345.26 5.41 -57.21 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: 0.46 Total: 28.22 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 5.03 Total: 6.64 kcal Atomic # 7 Polarization: -105.46 SS G_CDS: -3.96 Total: -109.42 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.05 Total: -18.05 kcal Atomic # 9 Polarization: -10.99 SS G_CDS: 2.02 Total: -8.97 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.90 Total: 44.37 kcal Total: -62.62 5.41 -57.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216226473.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.780 kcal (2) G-P(sol) polarization free energy of solvation -62.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds