Wall clock time and date at job start Tue Mar 31 2020 16:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.88737 * 2 1 4 4 C 1.54914 * 111.00205 * 236.12212 * 2 1 3 5 5 N 1.47426 * 104.82992 * 204.91932 * 4 2 1 6 6 C 1.34777 * 125.64500 * 204.16642 * 5 4 2 7 7 O 1.21275 * 120.00167 * 359.97438 * 6 5 4 8 8 C 1.50694 * 119.99872 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.47301 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47100 * 299.99887 * 9 8 6 11 11 C 1.52998 * 109.47097 * 60.00032 * 9 8 6 12 12 C 1.53001 * 109.47222 * 180.02562 * 9 8 6 13 13 F 1.39899 * 109.47649 * 60.00024 * 12 9 8 14 14 F 1.39903 * 109.46920 * 180.02562 * 12 9 8 15 15 F 1.39900 * 109.46816 * 299.99791 * 12 9 8 16 16 C 1.47018 * 108.70517 * 24.12623 * 5 4 2 17 17 C 1.54325 * 107.40412 * 358.86539 * 16 5 4 18 18 H 1.09000 * 110.72188 * 96.24097 * 17 16 5 19 19 N 1.46495 * 110.72250 * 219.52320 * 17 16 5 20 20 C 1.36934 * 119.99717 * 273.54393 * 19 17 16 21 21 H 1.08002 * 120.00471 * 359.97438 * 20 19 17 22 22 C 1.38816 * 119.99836 * 180.02562 * 20 19 17 23 23 N 1.31613 * 120.00160 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99860 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47550 * 89.99710 * 24 22 20 26 26 H 1.48503 * 109.46790 * 209.99816 * 24 22 20 27 27 H 1.48504 * 109.47100 * 329.99312 * 24 22 20 28 28 H 1.08997 * 109.47294 * 182.42358 * 1 2 3 29 29 H 1.08997 * 109.47279 * 302.43037 * 1 2 3 30 30 H 1.09006 * 109.47100 * 62.42832 * 1 2 3 31 31 H 1.08999 * 110.37121 * 86.07667 * 4 2 1 32 32 H 1.09001 * 110.45739 * 323.80279 * 4 2 1 33 33 H 1.08997 * 109.47569 * 299.99781 * 8 6 5 34 34 H 1.09007 * 109.47441 * 59.99852 * 8 6 5 35 35 H 1.09002 * 109.47052 * 59.99701 * 10 9 8 36 36 H 1.08997 * 109.47415 * 179.97438 * 10 9 8 37 37 H 1.08999 * 109.47456 * 300.00143 * 10 9 8 38 38 H 1.08993 * 109.47489 * 60.00009 * 11 9 8 39 39 H 1.09007 * 109.47072 * 180.02562 * 11 9 8 40 40 H 1.09000 * 109.47059 * 299.99672 * 11 9 8 41 41 H 1.09002 * 109.88241 * 118.36067 * 16 5 4 42 42 H 1.09000 * 109.88049 * 239.37196 * 16 5 4 43 43 H 0.96997 * 120.00433 * 93.54551 * 19 17 16 44 44 H 0.97005 * 120.00291 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8062 -1.2007 5 7 3.4271 -1.2428 -0.7739 6 6 4.4480 -1.5597 -1.5947 7 8 4.3014 -1.4970 -2.7969 8 6 5.7717 -1.9920 -1.0186 9 6 6.7497 -2.2916 -2.1564 10 6 6.1849 -3.4113 -3.0328 11 6 6.9486 -1.0326 -3.0028 12 6 8.0934 -2.7311 -1.5715 13 9 7.9113 -3.8824 -0.7979 14 9 8.9879 -3.0045 -2.6120 15 9 8.6101 -1.7075 -0.7699 16 6 3.4674 -1.2745 0.6954 17 6 2.0879 -0.8070 1.2052 18 1 1.4482 -1.6616 1.4256 19 7 2.2342 0.0505 2.3840 20 6 2.3116 -0.5083 3.6317 21 1 2.2644 -1.5811 3.7469 22 6 2.4498 0.3042 4.7487 23 7 2.5068 1.6116 4.6085 24 14 2.5561 -0.4581 6.4508 25 1 3.9774 -0.7327 6.7823 26 1 1.9872 0.4814 7.4503 27 1 1.7882 -1.7290 6.4728 28 1 -0.3634 -1.0267 0.0435 29 1 -0.3634 0.5511 0.8674 30 1 -0.3633 0.4757 -0.9110 31 1 2.1559 -0.1712 -2.0838 32 1 1.4524 -1.6698 -1.4050 33 1 6.1739 -1.1945 -0.3939 34 1 5.6301 -2.8892 -0.4160 35 1 5.2274 -3.0987 -3.4495 36 1 6.8814 -3.6245 -3.8437 37 1 6.0432 -4.3083 -2.4299 38 1 7.3509 -0.2349 -2.3785 39 1 7.6450 -1.2462 -3.8137 40 1 5.9911 -0.7200 -3.4196 41 1 3.6650 -2.2899 1.0391 42 1 4.2444 -0.6023 1.0595 43 1 2.2762 1.0140 2.2807 44 1 2.6037 2.1794 5.3890 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216623073.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:36 Heat of formation + Delta-G solvation = -185.736282 kcal Electronic energy + Delta-G solvation = -28848.872798 eV Core-core repulsion = 24386.160245 eV Total energy + Delta-G solvation = -4462.712553 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.23233 -47.69592 -47.67480 -40.29584 -38.20335 -35.91994 -34.14950 -32.66354 -30.80046 -28.91197 -27.56563 -27.51911 -26.30641 -25.70930 -24.03429 -21.76268 -20.76011 -20.03714 -19.05100 -18.43473 -18.28702 -17.62064 -17.18151 -16.40545 -16.08465 -15.48535 -15.07095 -14.79179 -14.68377 -14.20675 -14.11330 -13.87748 -13.86497 -13.81333 -13.72095 -13.60216 -13.41304 -13.21489 -12.97805 -12.77003 -12.51096 -12.10694 -12.04818 -11.67544 -11.48039 -11.42463 -11.34448 -11.29212 -11.18512 -11.04076 -10.79754 -10.66511 -10.31607 -10.03565 -9.82909 -9.58844 -9.05951 -8.42935 -7.16203 -5.90842 -3.22159 2.55533 2.63654 3.09184 3.35850 3.41785 3.43117 3.66834 3.89083 3.92873 4.45140 4.48540 4.62988 4.63243 4.80255 5.00735 5.07850 5.14076 5.32623 5.36338 5.49354 5.50934 5.55708 5.63355 5.67626 5.68562 5.72137 5.75960 5.83500 5.91791 6.11608 6.14077 6.17201 6.19880 6.29135 6.40799 6.47534 6.54241 6.79022 7.57415 7.67228 8.20493 8.26616 9.38693 9.91699 10.26403 11.30926 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.013159 B = 0.003625 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.294534 B = 7723.092735 C = 9253.670434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.084 0.916 4 C 0.114 3.886 5 N -0.608 5.608 6 C 0.536 3.464 7 O -0.546 6.546 8 C -0.137 4.137 9 C -0.084 4.084 10 C -0.159 4.159 11 C -0.159 4.159 12 C 0.455 3.545 13 F -0.183 7.183 14 F -0.182 7.182 15 F -0.182 7.182 16 C 0.068 3.932 17 C 0.178 3.822 18 H 0.067 0.933 19 N -0.711 5.711 20 C -0.251 4.251 21 H 0.072 0.928 22 C -0.006 4.006 23 N -0.928 5.928 24 Si 0.907 3.093 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.281 1.281 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.107 0.893 41 H 0.060 0.940 42 H 0.075 0.925 43 H 0.387 0.613 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.591 -7.381 -14.872 17.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.102 0.898 4 C -0.008 4.008 5 N -0.341 5.341 6 C 0.325 3.675 7 O -0.427 6.427 8 C -0.177 4.177 9 C -0.086 4.086 10 C -0.216 4.216 11 C -0.216 4.216 12 C 0.400 3.600 13 F -0.164 7.164 14 F -0.164 7.164 15 F -0.163 7.163 16 C -0.058 4.058 17 C 0.065 3.935 18 H 0.084 0.916 19 N -0.351 5.351 20 C -0.382 4.382 21 H 0.090 0.910 22 C -0.203 4.203 23 N -0.575 5.575 24 Si 0.738 3.262 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.206 1.206 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.125 0.875 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.222 0.778 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.594 -7.462 -15.320 17.936 hybrid contribution 0.618 -0.188 1.353 1.499 sum 6.211 -7.651 -13.967 17.094 Atomic orbital electron populations 1.21602 0.93802 1.01867 1.01804 1.22673 0.96372 0.99816 0.94540 0.89805 1.22269 0.82588 0.98169 0.97807 1.48530 1.11994 1.65282 1.08255 1.19738 0.84483 0.77190 0.86066 1.90538 1.82983 1.54759 1.14377 1.21701 0.93275 1.04846 0.97836 1.21509 0.89209 1.00555 0.97290 1.22174 1.04466 0.95748 0.99179 1.22179 1.05661 0.94332 0.99457 1.20656 0.88246 0.74965 0.76085 1.93166 1.95389 1.51472 1.76400 1.93150 1.71064 1.93885 1.58273 1.93179 1.88755 1.59499 1.74859 1.23437 1.03697 1.01441 0.77231 1.21281 0.91434 0.93839 0.86897 0.91550 1.42348 1.86865 1.05307 1.00576 1.19228 1.43424 0.91935 0.83580 0.90958 1.24758 1.02173 0.95330 0.98014 1.69653 1.56237 1.02330 1.29329 0.86205 0.77731 0.78059 0.84247 1.21563 1.21692 1.20629 0.92764 0.91410 0.93151 0.90834 0.91550 0.87534 0.87740 0.87484 0.91708 0.92077 0.91961 0.91711 0.87472 0.92114 0.90622 0.77835 0.93285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 9.30 37.16 0.35 -1.39 16 2 C -0.11 -1.66 3.26 -88.33 -0.29 -1.95 16 3 H 0.08 1.31 8.01 -51.93 -0.42 0.89 16 4 C 0.11 1.54 6.38 -2.53 -0.02 1.52 16 5 N -0.61 -8.70 3.33 -170.52 -0.57 -9.26 16 6 C 0.54 7.42 7.26 -10.99 -0.08 7.34 16 7 O -0.55 -8.24 11.60 5.56 0.06 -8.17 16 8 C -0.14 -1.63 3.72 -27.89 -0.10 -1.73 16 9 C -0.08 -0.94 0.33 -154.51 -0.05 -0.99 16 10 C -0.16 -1.69 7.93 37.16 0.29 -1.39 16 11 C -0.16 -1.75 7.93 37.16 0.29 -1.46 16 12 C 0.45 5.32 2.22 37.16 0.08 5.40 16 13 F -0.18 -2.22 16.28 2.25 0.04 -2.18 16 14 F -0.18 -2.13 16.28 2.25 0.04 -2.09 16 15 F -0.18 -2.28 16.28 2.25 0.04 -2.24 16 16 C 0.07 1.07 6.23 -3.07 -0.02 1.05 16 17 C 0.18 3.09 3.08 -65.96 -0.20 2.89 16 18 H 0.07 1.17 8.00 -51.93 -0.42 0.75 16 19 N -0.71 -15.96 5.18 -51.52 -0.27 -16.23 16 20 C -0.25 -6.37 9.98 -15.06 -0.15 -6.52 16 21 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 22 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 23 N -0.93 -26.44 13.06 55.49 0.72 -25.71 16 24 Si 0.91 21.20 29.55 -169.99 -5.02 16.18 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H 0.05 0.66 8.11 -51.93 -0.42 0.24 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.98 8.04 -51.93 -0.42 0.56 16 32 H 0.07 0.83 8.04 -51.93 -0.42 0.41 16 33 H 0.11 1.27 7.80 -51.93 -0.41 0.86 16 34 H 0.10 1.16 7.80 -51.93 -0.41 0.76 16 35 H 0.11 1.28 5.51 -51.93 -0.29 1.00 16 36 H 0.06 0.62 7.80 -51.93 -0.41 0.22 16 37 H 0.06 0.61 7.80 -51.93 -0.41 0.21 16 38 H 0.06 0.67 7.80 -51.93 -0.41 0.26 16 39 H 0.06 0.64 7.80 -51.93 -0.41 0.24 16 40 H 0.11 1.33 5.51 -51.93 -0.29 1.04 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.08 1.31 8.03 -51.93 -0.42 0.89 16 43 H 0.39 9.39 7.72 -40.82 -0.32 9.07 16 44 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 360.33 15.07 5.43 5.43 Total: -1.00 -27.68 360.33 -6.15 -33.84 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -6.64 Total: 7.94 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 0.01 Total: 2.50 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -0.11 Total: -51.21 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.06 Total: -8.17 kcal Atomic # 9 Polarization: -6.62 SS G_CDS: 0.11 Total: -6.51 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -27.68 -6.15 -33.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216623073.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.900 kcal (2) G-P(sol) polarization free energy of solvation -27.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds