Wall clock time and date at job start Tue Mar 31 2020 15:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 119.99875 * 2 1 4 4 O 1.45194 * 109.47397 * 134.99839 * 3 2 1 5 5 C 1.34633 * 117.00443 * 179.97438 * 4 3 2 6 6 O 1.21516 * 119.99862 * 0.02562 * 5 4 3 7 7 N 1.34770 * 120.00423 * 179.97438 * 5 4 3 8 8 C 1.47649 * 125.81368 * 0.02778 * 7 5 4 9 9 C 1.54987 * 104.85291 * 203.98876 * 8 7 5 10 10 C 1.55326 * 101.66845 * 323.39075 * 9 8 7 11 11 C 1.46236 * 125.81502 * 179.97438 * 7 5 4 12 12 C 1.53884 * 110.90649 * 299.84932 * 11 7 5 13 13 C 1.54634 * 101.59730 * 144.74270 * 12 11 7 14 14 N 1.46846 * 105.50636 * 335.22763 * 13 12 11 15 15 C 1.46499 * 124.37028 * 196.87659 * 14 13 12 16 16 C 1.52994 * 109.47094 * 270.01986 * 15 14 13 17 17 C 1.50704 * 109.47458 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99454 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00233 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99752 * 180.02562 * 19 17 16 21 21 Si 1.86792 * 120.00072 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47410 * 89.99904 * 21 19 17 23 23 H 1.48501 * 109.47323 * 209.99974 * 21 19 17 24 24 H 1.48507 * 109.47354 * 330.00026 * 21 19 17 25 25 C 1.34653 * 111.26211 * 16.87345 * 14 13 12 26 26 O 1.21280 * 125.07638 * 179.12577 * 25 14 13 27 27 H 1.08001 * 120.00325 * 0.02562 * 1 2 3 28 28 H 1.08005 * 119.99859 * 180.02562 * 1 2 3 29 29 H 1.08001 * 120.00325 * 179.97438 * 2 1 3 30 30 H 1.08995 * 109.47028 * 14.99421 * 3 2 1 31 31 H 1.09000 * 109.46784 * 254.99730 * 3 2 1 32 32 H 1.09003 * 110.36330 * 85.14471 * 8 7 5 33 33 H 1.08999 * 110.36483 * 322.83288 * 8 7 5 34 34 H 1.08997 * 110.98549 * 81.49207 * 9 8 7 35 35 H 1.09003 * 110.98529 * 205.29495 * 9 8 7 36 36 H 1.09003 * 110.75647 * 153.19729 * 10 9 8 37 37 H 1.08996 * 110.76301 * 276.58711 * 10 9 8 38 38 H 1.08999 * 111.00098 * 262.82168 * 12 11 7 39 39 H 1.09004 * 111.00079 * 26.66593 * 12 11 7 40 40 H 1.09001 * 110.24581 * 216.21309 * 13 12 11 41 41 H 1.09004 * 110.31780 * 94.27175 * 13 12 11 42 42 H 1.09001 * 109.47284 * 30.01905 * 15 14 13 43 43 H 1.09004 * 109.47274 * 150.02316 * 15 14 13 44 44 H 1.09005 * 109.47479 * 300.00103 * 16 15 14 45 45 H 1.09000 * 109.47436 * 60.00332 * 16 15 14 46 46 H 0.97007 * 119.99693 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1437 1.2404 0.9680 5 6 3.9194 2.3338 1.0924 6 8 3.6994 3.3155 0.4109 7 7 4.9393 2.3398 1.9733 8 6 5.3201 1.2238 2.8619 9 6 6.0720 1.8931 4.0404 10 6 6.8390 3.0334 3.3166 11 6 5.8580 3.4525 2.2112 12 6 6.6232 3.8170 0.9268 13 6 6.7441 5.3526 1.0623 14 7 5.6290 5.7595 1.9268 15 6 5.1346 7.1333 2.0473 16 6 5.8878 7.8498 3.1699 17 6 5.3796 9.2631 3.2935 18 1 4.5973 9.6150 2.6372 19 6 5.9133 10.1070 4.2443 20 7 5.4695 11.3402 4.3524 21 14 7.2668 9.4986 5.3788 22 1 8.5896 9.7651 4.7587 23 1 7.1782 10.2084 6.6802 24 1 7.1087 8.0386 5.5996 25 6 5.1196 4.7070 2.5945 26 8 4.2031 4.7617 3.3869 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3854 2.1161 0.2659 31 1 2.4755 1.4868 -0.9927 32 1 5.9771 0.5293 2.3383 33 1 4.4313 0.7068 3.2237 34 1 5.3715 2.2964 4.7716 35 1 6.7639 1.1936 4.5095 36 1 7.0312 3.8626 3.9976 37 1 7.7689 2.6614 2.8867 38 1 7.6067 3.3475 0.9115 39 1 6.0493 3.5471 0.0403 40 1 6.6552 5.8257 0.0844 41 1 7.6953 5.6181 1.5238 42 1 5.2955 7.6611 1.1073 43 1 4.0692 7.1172 2.2773 44 1 5.7269 7.3220 4.1100 45 1 6.9531 7.8660 2.9400 46 1 5.8453 11.9340 5.0211 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274345703.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:58 Heat of formation + Delta-G solvation = -77.087441 kcal Electronic energy + Delta-G solvation = -28385.626032 eV Core-core repulsion = 24469.481587 eV Total energy + Delta-G solvation = -3916.144445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 19.04 seconds Orbital eigenvalues (eV) -41.47745 -39.90551 -37.72372 -36.47122 -36.04397 -34.32560 -33.65171 -32.05705 -31.83999 -29.54370 -27.94435 -27.03248 -25.31037 -24.35685 -22.71239 -21.86205 -21.46923 -20.48046 -20.06818 -18.98092 -17.98084 -17.25172 -16.96931 -16.67630 -16.12934 -15.76465 -15.55784 -15.10296 -14.71288 -14.23178 -14.14999 -13.81672 -13.61378 -13.47959 -13.38286 -13.03267 -12.90306 -12.82878 -12.63866 -12.53714 -12.23844 -11.90992 -11.57988 -11.52059 -11.50396 -11.34357 -11.03466 -10.98957 -10.84691 -10.56358 -10.43388 -9.98927 -9.92657 -9.86332 -9.69781 -9.25993 -8.67882 -8.54319 -8.12345 -6.04832 -4.03555 1.45941 2.09000 2.71262 2.94873 3.29763 3.37791 3.42901 3.43300 3.79148 4.19284 4.23403 4.36483 4.45237 4.53835 4.65484 4.70913 4.78820 4.90571 4.99419 5.02426 5.18385 5.26916 5.29237 5.36725 5.41001 5.43469 5.54751 5.64578 5.66931 5.72618 5.85360 5.94339 6.00794 6.03034 6.11555 6.19064 6.26968 6.37547 6.62919 6.85254 7.17394 7.26330 7.36443 7.65061 7.77047 8.16168 8.49376 8.59016 8.98744 9.56901 11.08385 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.017654 B = 0.003307 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.619665 B = 8463.952410 C = 9155.471956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.158 4.158 3 C 0.114 3.886 4 O -0.364 6.364 5 C 0.668 3.332 6 O -0.557 6.557 7 N -0.582 5.582 8 C 0.106 3.894 9 C -0.133 4.133 10 C -0.111 4.111 11 C 0.149 3.851 12 C -0.138 4.138 13 C 0.105 3.895 14 N -0.606 5.606 15 C 0.139 3.861 16 C -0.024 4.024 17 C -0.520 4.520 18 H 0.074 0.926 19 C 0.069 3.931 20 N -0.901 5.901 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.266 1.266 25 C 0.520 3.480 26 O -0.520 6.520 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.120 0.880 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.020 0.980 45 H 0.013 0.987 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.779 -27.238 -8.006 28.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.176 4.176 3 C 0.040 3.960 4 O -0.278 6.278 5 C 0.422 3.578 6 O -0.445 6.445 7 N -0.322 5.322 8 C -0.016 4.016 9 C -0.171 4.171 10 C -0.150 4.150 11 C 0.060 3.940 12 C -0.177 4.177 13 C -0.019 4.019 14 N -0.339 5.339 15 C 0.019 3.981 16 C -0.062 4.062 17 C -0.559 4.559 18 H 0.092 0.908 19 C -0.132 4.132 20 N -0.540 5.540 21 Si 0.708 3.292 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.191 1.191 25 C 0.304 3.696 26 O -0.395 6.395 27 H 0.120 0.880 28 H 0.127 0.873 29 H 0.138 0.862 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.038 0.962 45 H 0.031 0.969 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.048 -26.662 -7.809 27.802 hybrid contribution 0.644 -0.028 0.483 0.805 sum 1.692 -26.690 -7.326 27.729 Atomic orbital electron populations 1.23931 0.95408 1.02758 0.98320 1.22669 0.95655 0.97591 1.01717 1.21978 0.86165 0.96729 0.91175 1.86214 1.42581 1.39190 1.59861 1.17403 0.78910 0.81526 0.79912 1.91052 1.71831 1.34251 1.47331 1.46636 1.29638 1.16223 1.39693 1.22429 1.00081 0.88779 0.90312 1.22878 0.99580 0.97416 0.97233 1.22574 0.96669 0.99864 0.95843 1.21152 0.89328 0.86292 0.97193 1.23020 1.01054 0.95982 0.97624 1.22048 0.90526 0.93605 0.95689 1.48461 1.33410 1.09029 1.43048 1.21591 0.99169 0.76963 1.00351 1.19901 0.95501 0.96446 0.94348 1.20970 1.21836 0.94095 1.18954 0.90793 1.24978 0.96680 0.94672 0.96911 1.69911 1.42922 1.05961 1.35191 0.86763 0.82430 0.79541 0.80496 1.20270 1.21290 1.19057 1.20299 0.83198 0.85405 0.80713 1.90691 1.28743 1.85451 1.34628 0.88003 0.87304 0.86220 0.90452 0.90124 0.90769 0.89875 0.89660 0.89052 0.88923 0.88924 0.88880 0.89064 0.90099 0.90823 0.90888 0.90627 0.96181 0.96876 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 14.31 29.02 0.42 -0.73 16 2 C -0.16 -1.28 9.90 -36.02 -0.36 -1.63 16 3 C 0.11 1.23 5.89 36.01 0.21 1.44 16 4 O -0.36 -4.76 9.75 -40.30 -0.39 -5.16 16 5 C 0.67 10.40 8.03 54.05 0.43 10.84 16 6 O -0.56 -10.35 14.66 -19.28 -0.28 -10.64 16 7 N -0.58 -7.95 2.90 -163.08 -0.47 -8.43 16 8 C 0.11 1.02 6.95 -2.36 -0.02 1.00 16 9 C -0.13 -1.21 7.09 -24.45 -0.17 -1.38 16 10 C -0.11 -1.16 6.08 -25.18 -0.15 -1.32 16 11 C 0.15 2.08 0.72 -132.42 -0.10 1.98 16 12 C -0.14 -1.62 6.19 -25.41 -0.16 -1.77 16 13 C 0.11 1.44 7.36 -2.99 -0.02 1.42 16 14 N -0.61 -11.43 2.94 -172.50 -0.51 -11.93 16 15 C 0.14 3.04 5.88 -4.05 -0.02 3.02 16 16 C -0.02 -0.59 4.36 -27.88 -0.12 -0.71 16 17 C -0.52 -15.21 9.66 -34.44 -0.33 -15.54 16 18 H 0.07 2.30 7.99 -52.48 -0.42 1.88 16 19 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 20 N -0.90 -28.22 13.96 55.43 0.77 -27.44 16 21 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.27 -6.56 6.54 56.52 0.37 -6.19 16 25 C 0.52 10.11 5.88 -11.12 -0.07 10.05 16 26 O -0.52 -12.29 17.62 5.56 0.10 -12.19 16 27 H 0.10 0.68 7.90 -52.49 -0.41 0.27 16 28 H 0.11 0.55 8.06 -52.48 -0.42 0.12 16 29 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 30 H 0.08 0.90 7.86 -51.93 -0.41 0.49 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.78 8.06 -51.93 -0.42 0.36 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 1.11 7.82 -51.93 -0.41 0.70 16 37 H 0.09 0.66 7.44 -51.93 -0.39 0.28 16 38 H 0.09 0.75 7.44 -51.93 -0.39 0.36 16 39 H 0.09 1.18 6.74 -51.93 -0.35 0.83 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 43 H 0.08 1.81 7.94 -51.93 -0.41 1.39 16 44 H 0.02 0.53 7.20 -51.93 -0.37 0.16 16 45 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 46 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 379.19 15.07 5.71 5.71 Total: -1.00 -37.79 379.19 -7.63 -45.42 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -7.34 Total: -1.47 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -0.55 Total: 8.61 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.21 Total: -47.81 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.58 Total: -27.98 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.79 -7.63 -45.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274345703.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.667 kcal (2) G-P(sol) polarization free energy of solvation -37.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 19.04 seconds