Wall clock time and date at job start Tue Mar 31 2020 15:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 119.99875 * 2 1 4 4 O 1.45194 * 109.47397 * 134.99839 * 3 2 1 5 5 C 1.34633 * 117.00443 * 179.97438 * 4 3 2 6 6 O 1.21516 * 119.99862 * 0.02562 * 5 4 3 7 7 N 1.34770 * 120.00423 * 179.97438 * 5 4 3 8 8 C 1.47649 * 125.81368 * 0.02778 * 7 5 4 9 9 C 1.54987 * 104.85291 * 203.98876 * 8 7 5 10 10 C 1.55326 * 101.66845 * 323.39075 * 9 8 7 11 11 C 1.46236 * 125.81502 * 179.97438 * 7 5 4 12 12 C 1.53884 * 110.90649 * 299.84932 * 11 7 5 13 13 C 1.54634 * 101.59730 * 144.74270 * 12 11 7 14 14 N 1.46846 * 105.50636 * 335.22763 * 13 12 11 15 15 C 1.46499 * 124.37028 * 196.87659 * 14 13 12 16 16 C 1.52994 * 109.47094 * 270.01986 * 15 14 13 17 17 C 1.50704 * 109.47458 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99454 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00233 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99752 * 180.02562 * 19 17 16 21 21 Si 1.86792 * 120.00072 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47410 * 89.99904 * 21 19 17 23 23 H 1.48501 * 109.47323 * 209.99974 * 21 19 17 24 24 H 1.48507 * 109.47354 * 330.00026 * 21 19 17 25 25 C 1.34653 * 111.26211 * 16.87345 * 14 13 12 26 26 O 1.21280 * 125.07638 * 179.12577 * 25 14 13 27 27 H 1.08001 * 120.00325 * 0.02562 * 1 2 3 28 28 H 1.08005 * 119.99859 * 180.02562 * 1 2 3 29 29 H 1.08001 * 120.00325 * 179.97438 * 2 1 3 30 30 H 1.08995 * 109.47028 * 14.99421 * 3 2 1 31 31 H 1.09000 * 109.46784 * 254.99730 * 3 2 1 32 32 H 1.09003 * 110.36330 * 85.14471 * 8 7 5 33 33 H 1.08999 * 110.36483 * 322.83288 * 8 7 5 34 34 H 1.08997 * 110.98549 * 81.49207 * 9 8 7 35 35 H 1.09003 * 110.98529 * 205.29495 * 9 8 7 36 36 H 1.09003 * 110.75647 * 153.19729 * 10 9 8 37 37 H 1.08996 * 110.76301 * 276.58711 * 10 9 8 38 38 H 1.08999 * 111.00098 * 262.82168 * 12 11 7 39 39 H 1.09004 * 111.00079 * 26.66593 * 12 11 7 40 40 H 1.09001 * 110.24581 * 216.21309 * 13 12 11 41 41 H 1.09004 * 110.31780 * 94.27175 * 13 12 11 42 42 H 1.09001 * 109.47284 * 30.01905 * 15 14 13 43 43 H 1.09004 * 109.47274 * 150.02316 * 15 14 13 44 44 H 1.09005 * 109.47479 * 300.00103 * 16 15 14 45 45 H 1.09000 * 109.47436 * 60.00332 * 16 15 14 46 46 H 0.97007 * 119.99693 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1437 1.2404 0.9680 5 6 3.9194 2.3338 1.0924 6 8 3.6994 3.3155 0.4109 7 7 4.9393 2.3398 1.9733 8 6 5.3201 1.2238 2.8619 9 6 6.0720 1.8931 4.0404 10 6 6.8390 3.0334 3.3166 11 6 5.8580 3.4525 2.2112 12 6 6.6232 3.8170 0.9268 13 6 6.7441 5.3526 1.0623 14 7 5.6290 5.7595 1.9268 15 6 5.1346 7.1333 2.0473 16 6 5.8878 7.8498 3.1699 17 6 5.3796 9.2631 3.2935 18 1 4.5973 9.6150 2.6372 19 6 5.9133 10.1070 4.2443 20 7 5.4695 11.3402 4.3524 21 14 7.2668 9.4986 5.3788 22 1 8.5896 9.7651 4.7587 23 1 7.1782 10.2084 6.6802 24 1 7.1087 8.0386 5.5996 25 6 5.1196 4.7070 2.5945 26 8 4.2031 4.7617 3.3869 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3854 2.1161 0.2659 31 1 2.4755 1.4868 -0.9927 32 1 5.9771 0.5293 2.3383 33 1 4.4313 0.7068 3.2237 34 1 5.3715 2.2964 4.7716 35 1 6.7639 1.1936 4.5095 36 1 7.0312 3.8626 3.9976 37 1 7.7689 2.6614 2.8867 38 1 7.6067 3.3475 0.9115 39 1 6.0493 3.5471 0.0403 40 1 6.6552 5.8257 0.0844 41 1 7.6953 5.6181 1.5238 42 1 5.2955 7.6611 1.1073 43 1 4.0692 7.1172 2.2773 44 1 5.7269 7.3220 4.1100 45 1 6.9531 7.8660 2.9400 46 1 5.8453 11.9340 5.0211 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274345703.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:57 Heat of formation + Delta-G solvation = -103.632274 kcal Electronic energy + Delta-G solvation = -28386.777102 eV Core-core repulsion = 24469.481587 eV Total energy + Delta-G solvation = -3917.295515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.61827 -41.08207 -38.87719 -37.58603 -37.54188 -35.63229 -35.01399 -33.78521 -32.82266 -31.17826 -29.02293 -27.84132 -27.12831 -25.41218 -23.73461 -23.35245 -22.63151 -21.58164 -21.09480 -20.23034 -19.12307 -19.04463 -18.34418 -17.76151 -17.25000 -17.03877 -16.91357 -16.29762 -15.95247 -15.85310 -15.23460 -15.03413 -14.80788 -14.77017 -14.59927 -14.43134 -14.21945 -14.00165 -13.77829 -13.59513 -13.46391 -13.30370 -12.96306 -12.87439 -12.35972 -12.28475 -12.20788 -12.16567 -12.02035 -12.00033 -11.88302 -11.79529 -11.59593 -11.55647 -11.03311 -10.82410 -10.51457 -9.83665 -9.67281 -8.35338 -6.41553 0.59084 1.27502 1.30026 1.34911 1.46698 1.55166 1.60308 2.04721 2.31889 2.87332 2.99118 3.17573 3.32085 3.45979 3.70231 3.81143 3.90283 3.97211 4.06652 4.16614 4.18432 4.22481 4.40240 4.43250 4.48751 4.63395 4.67731 4.69242 4.75776 4.76454 4.85137 4.87565 4.95916 5.05215 5.08137 5.13433 5.22198 5.23812 5.27551 5.44383 5.52308 5.63815 5.66490 6.14934 6.18274 6.23309 6.64156 7.02965 7.10493 7.23443 8.81319 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.017654 B = 0.003307 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.619665 B = 8463.952410 C = 9155.471956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.170 4.170 3 C 0.109 3.891 4 O -0.359 6.359 5 C 0.659 3.341 6 O -0.600 6.600 7 N -0.583 5.583 8 C 0.101 3.899 9 C -0.128 4.128 10 C -0.107 4.107 11 C 0.148 3.852 12 C -0.122 4.122 13 C 0.094 3.906 14 N -0.615 5.615 15 C 0.149 3.851 16 C -0.008 4.008 17 C -0.538 4.538 18 H 0.033 0.967 19 C 0.008 3.992 20 N -0.947 5.947 21 Si 0.955 3.045 22 H -0.251 1.251 23 H -0.282 1.282 24 H -0.258 1.258 25 C 0.500 3.500 26 O -0.581 6.581 27 H 0.097 0.903 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.135 0.865 36 H 0.074 0.926 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.038 0.962 44 H 0.001 0.999 45 H 0.036 0.964 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.345 -30.895 -8.026 32.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.188 4.188 3 C 0.035 3.965 4 O -0.273 6.273 5 C 0.414 3.586 6 O -0.490 6.490 7 N -0.323 5.323 8 C -0.019 4.019 9 C -0.165 4.165 10 C -0.145 4.145 11 C 0.060 3.940 12 C -0.161 4.161 13 C -0.028 4.028 14 N -0.347 5.347 15 C 0.027 3.973 16 C -0.047 4.047 17 C -0.576 4.576 18 H 0.052 0.948 19 C -0.190 4.190 20 N -0.587 5.587 21 Si 0.777 3.223 22 H -0.176 1.176 23 H -0.207 1.207 24 H -0.183 1.183 25 C 0.287 3.713 26 O -0.461 6.461 27 H 0.116 0.884 28 H 0.152 0.848 29 H 0.155 0.845 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.132 0.868 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.153 0.847 36 H 0.093 0.907 37 H 0.161 0.839 38 H 0.165 0.835 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.119 0.881 42 H 0.104 0.896 43 H 0.056 0.944 44 H 0.020 0.980 45 H 0.054 0.946 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.647 -30.368 -7.858 31.710 hybrid contribution -0.650 1.172 0.444 1.412 sum 3.997 -29.196 -7.414 30.386 Atomic orbital electron populations 1.24177 0.95083 1.03792 0.96177 1.22652 0.95932 0.96634 1.03570 1.22170 0.85563 0.98011 0.90793 1.86230 1.42669 1.38057 1.60338 1.17738 0.79370 0.81483 0.80038 1.91013 1.73037 1.35772 1.49228 1.46886 1.28922 1.17203 1.39327 1.22780 1.00859 0.88076 0.90197 1.22912 0.99536 0.97722 0.96369 1.22741 0.97611 0.99666 0.94488 1.21338 0.89300 0.83767 0.99631 1.23083 1.03095 0.94340 0.95536 1.22476 0.89523 0.95362 0.95390 1.48583 1.34763 1.07554 1.43802 1.21147 0.96855 0.79383 0.99876 1.19698 0.96716 0.93746 0.94500 1.21265 1.21201 0.96503 1.18667 0.94837 1.26004 0.99638 0.94647 0.98670 1.70061 1.44750 1.07516 1.36326 0.85595 0.79515 0.79134 0.78018 1.17559 1.20747 1.18260 1.21510 0.82649 0.87592 0.79546 1.90635 1.31474 1.86707 1.37239 0.88430 0.84780 0.84530 0.92341 0.89954 0.86808 0.90204 0.92953 0.84682 0.90701 0.83873 0.83489 0.90571 0.89228 0.88102 0.89590 0.94371 0.98023 0.94600 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 14.31 67.79 0.97 -0.96 16 2 C -0.17 -2.59 9.90 25.65 0.25 -2.33 16 3 C 0.11 2.41 5.89 71.24 0.42 2.83 16 4 O -0.36 -9.41 9.75 -55.42 -0.54 -9.95 16 5 C 0.66 20.72 8.03 129.79 1.04 21.76 16 6 O -0.60 -23.24 14.66 19.79 0.29 -22.95 16 7 N -0.58 -15.18 2.90 -900.29 -2.61 -17.79 16 8 C 0.10 1.63 6.95 86.84 0.60 2.23 16 9 C -0.13 -1.90 7.09 32.07 0.23 -1.68 16 10 C -0.11 -1.82 6.08 31.60 0.19 -1.63 16 11 C 0.15 3.85 0.72 3.36 0.00 3.85 16 12 C -0.12 -2.44 6.19 31.45 0.19 -2.25 16 13 C 0.09 2.35 7.36 86.87 0.64 2.99 16 14 N -0.62 -23.34 2.94 -818.13 -2.41 -25.74 16 15 C 0.15 6.81 5.88 86.38 0.51 7.32 16 16 C -0.01 -0.42 4.36 29.85 0.13 -0.29 16 17 C -0.54 -32.73 9.66 25.60 0.25 -32.48 16 18 H 0.03 2.23 7.99 -2.91 -0.02 2.21 16 19 C 0.01 0.48 5.47 84.65 0.46 0.94 16 20 N -0.95 -60.91 13.96 21.45 0.30 -60.61 16 21 Si 0.95 45.56 27.47 68.60 1.88 47.44 16 22 H -0.25 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 24 H -0.26 -11.94 6.54 99.48 0.65 -11.29 16 25 C 0.50 19.87 5.88 87.62 0.52 20.38 16 26 O -0.58 -29.18 17.62 -3.03 -0.05 -29.23 16 27 H 0.10 1.28 7.90 -2.91 -0.02 1.26 16 28 H 0.13 1.01 8.06 -2.91 -0.02 0.99 16 29 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 30 H 0.06 1.48 7.86 -2.39 -0.02 1.46 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 1.34 8.06 -2.39 -0.02 1.32 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 1.59 7.82 -2.39 -0.02 1.57 16 37 H 0.14 1.03 7.44 -2.39 -0.02 1.01 16 38 H 0.15 1.38 7.44 -2.39 -0.02 1.36 16 39 H 0.08 1.81 6.74 -2.39 -0.02 1.79 16 40 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 42 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16 43 H 0.04 1.98 7.94 -2.38 -0.02 1.96 16 44 H 0.00 0.08 7.20 -2.38 -0.02 0.06 16 45 H 0.04 1.65 7.57 -2.39 -0.02 1.63 16 46 H 0.27 16.00 8.31 -92.70 -0.77 15.23 16 Total: -1.00 -90.57 379.19 4.18 -86.39 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.90 Total: 11.76 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: 6.41 Total: 20.69 kcal Atomic # 7 Polarization: -99.43 SS G_CDS: -4.72 Total: -104.15 kcal Atomic # 8 Polarization: -61.83 SS G_CDS: -0.30 Total: -62.13 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.88 Total: 47.44 kcal Total: -90.57 4.18 -86.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274345703.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.238 kcal (2) G-P(sol) polarization free energy of solvation -90.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds