Wall clock time and date at job start Tue Mar 31 2020 15:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 120.00129 * 2 1 4 4 O 1.45202 * 109.46859 * 134.99952 * 3 2 1 5 5 C 1.34638 * 116.99776 * 179.97438 * 4 3 2 6 6 O 1.21513 * 119.99956 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99672 * 180.27362 * 5 4 3 8 8 C 1.47136 * 125.73534 * 359.42407 * 7 5 4 9 9 C 1.54345 * 107.22674 * 179.55681 * 8 7 5 10 10 C 1.55416 * 103.08670 * 338.17910 * 9 8 7 11 11 H 1.09000 * 112.31650 * 153.81163 * 10 9 8 12 12 C 1.46926 * 125.73014 * 179.72503 * 7 5 4 13 13 H 1.08998 * 109.82378 * 84.78712 * 12 7 5 14 14 C 1.52320 * 110.83179 * 323.26872 * 12 7 5 15 15 C 1.52982 * 109.48501 * 306.87446 * 14 12 7 16 16 C 1.50309 * 109.17852 * 308.11095 * 15 14 12 17 17 O 1.21281 * 118.57728 * 201.50141 * 16 15 14 18 18 N 1.33124 * 122.84647 * 21.47815 * 16 15 14 19 19 C 1.46507 * 117.26494 * 179.88672 * 18 16 15 20 20 C 1.52994 * 109.47173 * 89.99812 * 19 18 16 21 21 C 1.50694 * 109.47283 * 180.02562 * 20 19 18 22 22 H 1.07999 * 120.00306 * 359.97438 * 21 20 19 23 23 C 1.37880 * 120.00198 * 180.02562 * 21 20 19 24 24 N 1.31516 * 119.99884 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00040 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.47191 * 90.00129 * 25 23 21 27 27 H 1.48500 * 109.47138 * 210.00444 * 25 23 21 28 28 H 1.48507 * 109.47089 * 330.00132 * 25 23 21 29 29 H 1.07991 * 120.00373 * 179.97438 * 1 2 3 30 30 H 1.08006 * 119.99609 * 0.02562 * 1 2 3 31 31 H 1.08006 * 119.99609 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.47259 * 14.99826 * 3 2 1 33 33 H 1.09004 * 109.46840 * 254.99606 * 3 2 1 34 34 H 1.09001 * 109.88472 * 299.08620 * 8 7 5 35 35 H 1.08998 * 109.88958 * 60.27886 * 8 7 5 36 36 H 1.08998 * 110.83720 * 219.69112 * 9 8 7 37 37 H 1.09003 * 110.50370 * 96.50809 * 9 8 7 38 38 H 1.09008 * 109.47166 * 66.87727 * 14 12 7 39 39 H 1.08999 * 109.46873 * 186.87010 * 14 12 7 40 40 H 1.09002 * 109.51558 * 68.01889 * 15 14 12 41 41 H 1.08996 * 109.52045 * 188.19567 * 15 14 12 42 42 H 1.09001 * 109.47047 * 209.99607 * 19 18 16 43 43 H 1.09003 * 109.46680 * 329.99984 * 19 18 16 44 44 H 1.09003 * 109.47486 * 300.00631 * 20 19 18 45 45 H 1.09005 * 109.47284 * 59.99947 * 20 19 18 46 46 H 0.97007 * 119.99781 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1439 1.2402 0.9680 5 6 3.9196 2.3335 1.0924 6 8 3.6996 3.3153 0.4110 7 7 4.9433 2.3372 1.9691 8 6 5.3177 1.2259 2.8577 9 6 6.5504 1.6827 3.6665 10 6 7.1435 2.8215 2.7909 11 1 7.7115 3.5426 3.3788 12 6 5.8690 3.4541 2.2025 13 1 5.4355 4.1495 2.9213 14 6 6.1781 4.1825 0.9010 15 6 6.6605 3.1758 -0.1450 16 6 7.7791 2.3573 0.4364 17 8 8.5444 1.7995 -0.3213 18 7 7.9665 2.2186 1.7471 19 6 9.0947 1.3901 2.1798 20 6 10.3410 2.2645 2.3314 21 6 11.5016 1.4122 2.7758 22 1 11.3640 0.3528 2.9347 23 6 12.7389 1.9850 2.9807 24 7 13.7517 1.2412 3.3690 25 14 12.9769 3.8173 2.7066 26 1 12.7058 4.5464 3.9716 27 1 14.3743 4.0760 2.2757 28 1 12.0396 4.2863 1.6544 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3856 2.1161 0.2659 33 1 2.4756 1.4867 -0.9927 34 1 4.4930 0.9969 3.5327 35 1 5.5702 0.3464 2.2654 36 1 7.2661 0.8679 3.7758 37 1 6.2473 2.0642 4.6416 38 1 5.2772 4.6785 0.5394 39 1 6.9562 4.9253 1.0764 40 1 5.8368 2.5195 -0.4259 41 1 7.0189 3.7090 -1.0255 42 1 8.8582 0.9255 3.1370 43 1 9.2826 0.6154 1.4364 44 1 10.5775 2.7292 1.3742 45 1 10.1530 3.0393 3.0747 46 1 14.6223 1.6441 3.5128 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274346139.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:47 Heat of formation + Delta-G solvation = -76.546691 kcal Electronic energy + Delta-G solvation = -28606.784720 eV Core-core repulsion = 24690.663723 eV Total energy + Delta-G solvation = -3916.120996 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.52734 -40.04726 -38.17365 -36.72144 -35.06422 -34.49794 -33.73419 -32.85449 -31.20986 -29.69564 -28.62405 -27.03722 -25.32904 -24.41237 -22.94076 -21.92880 -21.23124 -20.54840 -20.13173 -18.31644 -17.96225 -17.43660 -16.98224 -16.87715 -16.47874 -16.07404 -15.51908 -15.22885 -14.63784 -14.42158 -14.25204 -14.08732 -13.69017 -13.64688 -13.22687 -13.06709 -12.94600 -12.75760 -12.65606 -12.54878 -12.20343 -11.84277 -11.61026 -11.54314 -11.33071 -11.17955 -11.06245 -11.04019 -10.91504 -10.47647 -10.40585 -10.01561 -9.93388 -9.79398 -9.35219 -9.12492 -8.96864 -8.54121 -8.24975 -6.05091 -4.03362 1.41686 2.08221 2.59322 3.03357 3.29422 3.30570 3.38627 3.44424 3.63052 4.14062 4.26144 4.45434 4.45928 4.61668 4.64006 4.68286 4.82004 4.95327 4.97397 5.02873 5.05371 5.28875 5.29918 5.34565 5.40500 5.47577 5.55439 5.62386 5.73935 5.80577 5.88242 5.92518 5.99041 6.06220 6.10747 6.16006 6.22643 6.36896 6.63357 6.69290 7.20177 7.23169 7.39145 7.76256 7.89361 8.04614 8.49415 8.58822 8.98433 9.57204 11.08096 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.024759 B = 0.003107 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.640184 B = 9009.078824 C = 9210.002047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.157 4.157 3 C 0.115 3.885 4 O -0.364 6.364 5 C 0.668 3.332 6 O -0.567 6.567 7 N -0.596 5.596 8 C 0.108 3.892 9 C -0.149 4.149 10 C 0.136 3.864 11 H 0.113 0.887 12 C 0.149 3.851 13 H 0.097 0.903 14 C -0.135 4.135 15 C -0.126 4.126 16 C 0.513 3.487 17 O -0.546 6.546 18 N -0.596 5.596 19 C 0.114 3.886 20 C -0.020 4.020 21 C -0.518 4.518 22 H 0.073 0.927 23 C 0.069 3.931 24 N -0.902 5.902 25 Si 0.880 3.120 26 H -0.278 1.278 27 H -0.288 1.288 28 H -0.266 1.266 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.121 0.879 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.021 0.979 45 H 0.010 0.990 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.698 2.456 -0.853 26.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.176 4.176 3 C 0.040 3.960 4 O -0.278 6.278 5 C 0.423 3.577 6 O -0.456 6.456 7 N -0.338 5.338 8 C -0.015 4.015 9 C -0.187 4.187 10 C 0.031 3.969 11 H 0.131 0.869 12 C 0.047 3.953 13 H 0.114 0.886 14 C -0.173 4.173 15 C -0.166 4.166 16 C 0.301 3.699 17 O -0.423 6.423 18 N -0.329 5.329 19 C -0.006 4.006 20 C -0.058 4.058 21 C -0.556 4.556 22 H 0.091 0.909 23 C -0.133 4.133 24 N -0.541 5.541 25 Si 0.707 3.293 26 H -0.204 1.204 27 H -0.214 1.214 28 H -0.191 1.191 29 H 0.127 0.873 30 H 0.118 0.882 31 H 0.139 0.861 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.121 0.879 37 H 0.109 0.891 38 H 0.120 0.880 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.116 0.884 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.039 0.961 45 H 0.028 0.972 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -26.338 2.444 -1.533 26.496 hybrid contribution 0.210 0.926 -0.074 0.953 sum -26.128 3.370 -1.606 26.393 Atomic orbital electron populations 1.23900 0.95343 1.02663 0.98705 1.22713 0.95669 0.97819 1.01349 1.21968 0.86040 0.96579 0.91376 1.86272 1.42678 1.39256 1.59623 1.17430 0.79167 0.81552 0.79528 1.90966 1.72684 1.34607 1.47391 1.47037 1.29046 1.17923 1.39754 1.22085 0.97359 0.89563 0.92454 1.23264 0.96779 1.00197 0.98474 1.22111 0.89967 0.95404 0.89410 0.86945 1.21720 0.87532 0.87599 0.98420 0.88568 1.21795 1.03669 0.98276 0.93566 1.21548 0.97261 0.98241 0.99545 1.19984 0.86029 0.81798 0.82075 1.90742 1.46138 1.48235 1.57234 1.47443 1.30356 1.50238 1.04814 1.21769 0.84974 0.94208 0.99695 1.19816 0.93308 0.95946 0.96776 1.20961 0.92690 0.96442 1.45507 0.90899 1.24979 0.95877 0.97937 0.94477 1.69911 1.01291 1.35770 1.47097 0.86778 0.77486 0.86124 0.78911 1.20350 1.21357 1.19053 0.87299 0.88151 0.86093 0.90585 0.90059 0.90723 0.90982 0.87900 0.89063 0.87988 0.90002 0.89426 0.88444 0.91018 0.90007 0.96066 0.97218 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.95 14.31 29.01 0.42 -0.54 16 2 C -0.16 -1.14 9.90 -36.03 -0.36 -1.50 16 3 C 0.11 1.04 5.89 36.01 0.21 1.25 16 4 O -0.36 -4.17 9.81 -40.32 -0.40 -4.57 16 5 C 0.67 8.43 7.11 54.06 0.38 8.81 16 6 O -0.57 -8.04 13.37 -19.28 -0.26 -8.29 16 7 N -0.60 -6.76 2.82 -170.02 -0.48 -7.24 16 8 C 0.11 1.05 6.87 -2.99 -0.02 1.03 16 9 C -0.15 -1.41 6.38 -24.74 -0.16 -1.57 16 10 C 0.14 1.61 3.69 -66.43 -0.25 1.36 16 11 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 12 C 0.15 1.60 3.26 -67.54 -0.22 1.38 16 13 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 14 C -0.14 -1.60 4.95 -27.09 -0.13 -1.74 16 15 C -0.13 -1.83 5.59 -28.08 -0.16 -1.99 16 16 C 0.51 9.30 7.45 -11.91 -0.09 9.21 16 17 O -0.55 -12.46 16.17 5.56 0.09 -12.37 16 18 N -0.60 -9.72 2.52 -165.10 -0.42 -10.14 16 19 C 0.11 2.24 4.85 -4.04 -0.02 2.22 16 20 C -0.02 -0.48 4.35 -27.89 -0.12 -0.60 16 21 C -0.52 -14.67 9.66 -34.44 -0.33 -15.00 16 22 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 23 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 24 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 25 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.27 -6.58 6.54 56.52 0.37 -6.21 16 29 H 0.11 0.46 8.06 -52.49 -0.42 0.04 16 30 H 0.10 0.48 7.90 -52.48 -0.41 0.07 16 31 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 32 H 0.08 0.64 7.86 -51.93 -0.41 0.24 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.10 1.08 5.89 -51.93 -0.31 0.78 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.10 1.24 6.27 -51.92 -0.33 0.91 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.09 1.31 6.11 -51.93 -0.32 1.00 16 41 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 42 H 0.07 1.24 5.90 -51.93 -0.31 0.94 16 43 H 0.08 1.81 7.13 -51.93 -0.37 1.44 16 44 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 45 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 46 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 365.97 15.07 5.52 5.52 Total: -1.00 -35.38 365.97 -7.81 -43.19 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -7.03 Total: -0.64 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -0.94 Total: 4.26 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: -0.12 Total: -44.42 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.56 Total: -25.23 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.38 -7.81 -43.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274346139.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.356 kcal (2) G-P(sol) polarization free energy of solvation -35.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds