Wall clock time and date at job start Tue Mar 31 2020 15:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 120.00129 * 2 1 4 4 O 1.45202 * 109.46859 * 134.99952 * 3 2 1 5 5 C 1.34638 * 116.99776 * 179.97438 * 4 3 2 6 6 O 1.21513 * 119.99956 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99672 * 180.27362 * 5 4 3 8 8 C 1.47136 * 125.73534 * 359.42407 * 7 5 4 9 9 C 1.54345 * 107.22674 * 179.55681 * 8 7 5 10 10 C 1.55416 * 103.08670 * 338.17910 * 9 8 7 11 11 H 1.09000 * 112.31650 * 153.81163 * 10 9 8 12 12 C 1.46926 * 125.73014 * 179.72503 * 7 5 4 13 13 H 1.08998 * 109.82378 * 84.78712 * 12 7 5 14 14 C 1.52320 * 110.83179 * 323.26872 * 12 7 5 15 15 C 1.52982 * 109.48501 * 306.87446 * 14 12 7 16 16 C 1.50309 * 109.17852 * 308.11095 * 15 14 12 17 17 O 1.21281 * 118.57728 * 201.50141 * 16 15 14 18 18 N 1.33124 * 122.84647 * 21.47815 * 16 15 14 19 19 C 1.46507 * 117.26494 * 179.88672 * 18 16 15 20 20 C 1.52994 * 109.47173 * 89.99812 * 19 18 16 21 21 C 1.50694 * 109.47283 * 180.02562 * 20 19 18 22 22 H 1.07999 * 120.00306 * 359.97438 * 21 20 19 23 23 C 1.37880 * 120.00198 * 180.02562 * 21 20 19 24 24 N 1.31516 * 119.99884 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00040 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.47191 * 90.00129 * 25 23 21 27 27 H 1.48500 * 109.47138 * 210.00444 * 25 23 21 28 28 H 1.48507 * 109.47089 * 330.00132 * 25 23 21 29 29 H 1.07991 * 120.00373 * 179.97438 * 1 2 3 30 30 H 1.08006 * 119.99609 * 0.02562 * 1 2 3 31 31 H 1.08006 * 119.99609 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.47259 * 14.99826 * 3 2 1 33 33 H 1.09004 * 109.46840 * 254.99606 * 3 2 1 34 34 H 1.09001 * 109.88472 * 299.08620 * 8 7 5 35 35 H 1.08998 * 109.88958 * 60.27886 * 8 7 5 36 36 H 1.08998 * 110.83720 * 219.69112 * 9 8 7 37 37 H 1.09003 * 110.50370 * 96.50809 * 9 8 7 38 38 H 1.09008 * 109.47166 * 66.87727 * 14 12 7 39 39 H 1.08999 * 109.46873 * 186.87010 * 14 12 7 40 40 H 1.09002 * 109.51558 * 68.01889 * 15 14 12 41 41 H 1.08996 * 109.52045 * 188.19567 * 15 14 12 42 42 H 1.09001 * 109.47047 * 209.99607 * 19 18 16 43 43 H 1.09003 * 109.46680 * 329.99984 * 19 18 16 44 44 H 1.09003 * 109.47486 * 300.00631 * 20 19 18 45 45 H 1.09005 * 109.47284 * 59.99947 * 20 19 18 46 46 H 0.97007 * 119.99781 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1439 1.2402 0.9680 5 6 3.9196 2.3335 1.0924 6 8 3.6996 3.3153 0.4110 7 7 4.9433 2.3372 1.9691 8 6 5.3177 1.2259 2.8577 9 6 6.5504 1.6827 3.6665 10 6 7.1435 2.8215 2.7909 11 1 7.7115 3.5426 3.3788 12 6 5.8690 3.4541 2.2025 13 1 5.4355 4.1495 2.9213 14 6 6.1781 4.1825 0.9010 15 6 6.6605 3.1758 -0.1450 16 6 7.7791 2.3573 0.4364 17 8 8.5444 1.7995 -0.3213 18 7 7.9665 2.2186 1.7471 19 6 9.0947 1.3901 2.1798 20 6 10.3410 2.2645 2.3314 21 6 11.5016 1.4122 2.7758 22 1 11.3640 0.3528 2.9347 23 6 12.7389 1.9850 2.9807 24 7 13.7517 1.2412 3.3690 25 14 12.9769 3.8173 2.7066 26 1 12.7058 4.5464 3.9716 27 1 14.3743 4.0760 2.2757 28 1 12.0396 4.2863 1.6544 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3856 2.1161 0.2659 33 1 2.4756 1.4867 -0.9927 34 1 4.4930 0.9969 3.5327 35 1 5.5702 0.3464 2.2654 36 1 7.2661 0.8679 3.7758 37 1 6.2473 2.0642 4.6416 38 1 5.2772 4.6785 0.5394 39 1 6.9562 4.9253 1.0764 40 1 5.8368 2.5195 -0.4259 41 1 7.0189 3.7090 -1.0255 42 1 8.8582 0.9255 3.1370 43 1 9.2826 0.6154 1.4364 44 1 10.5775 2.7292 1.3742 45 1 10.1530 3.0393 3.0747 46 1 14.6223 1.6441 3.5128 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274346139.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:46 Heat of formation + Delta-G solvation = -99.765189 kcal Electronic energy + Delta-G solvation = -28607.791549 eV Core-core repulsion = 24690.663723 eV Total energy + Delta-G solvation = -3917.127826 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 9.67 seconds Orbital eigenvalues (eV) -42.55850 -41.11731 -39.32901 -37.67342 -36.51749 -35.30576 -34.85278 -34.57288 -32.54690 -31.25647 -29.61350 -27.72003 -27.07382 -25.39015 -24.16440 -22.99746 -22.69383 -21.47017 -20.95697 -19.42338 -19.14769 -18.85114 -18.10569 -17.85837 -17.71378 -17.35130 -16.75012 -16.39721 -16.06858 -15.50561 -15.30695 -15.18748 -14.90435 -14.78058 -14.55619 -14.32801 -14.13329 -14.01885 -13.68992 -13.61716 -13.56085 -13.07701 -12.85479 -12.71595 -12.38566 -12.21480 -12.15055 -12.07230 -12.06073 -11.90877 -11.89645 -11.60517 -11.50937 -11.43345 -10.76490 -10.60654 -10.47228 -9.84482 -9.69670 -8.30062 -6.34001 0.75103 1.32036 1.37554 1.42325 1.48606 1.60550 1.68227 2.00233 2.35255 2.83499 3.05355 3.26125 3.42506 3.52840 3.73205 3.86908 3.93596 4.02445 4.04664 4.20366 4.24595 4.28895 4.35038 4.47289 4.49606 4.59580 4.65029 4.70471 4.76832 4.80890 4.86862 4.88717 4.95256 5.03707 5.10542 5.16099 5.22712 5.33126 5.39499 5.50751 5.58183 5.65292 5.68140 6.24758 6.31528 6.52529 6.72534 7.14016 7.17421 7.30609 8.86309 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.024759 B = 0.003107 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.640184 B = 9009.078824 C = 9210.002047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.179 4.179 3 C 0.112 3.888 4 O -0.371 6.371 5 C 0.663 3.337 6 O -0.588 6.588 7 N -0.598 5.598 8 C 0.108 3.892 9 C -0.139 4.139 10 C 0.123 3.877 11 H 0.135 0.865 12 C 0.151 3.849 13 H 0.134 0.866 14 C -0.129 4.129 15 C -0.116 4.116 16 C 0.506 3.494 17 O -0.605 6.605 18 N -0.587 5.587 19 C 0.128 3.872 20 C -0.010 4.010 21 C -0.527 4.527 22 H 0.038 0.962 23 C 0.008 3.992 24 N -0.947 5.947 25 Si 0.949 3.051 26 H -0.252 1.252 27 H -0.287 1.287 28 H -0.263 1.263 29 H 0.126 0.874 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.052 0.948 36 H 0.091 0.909 37 H 0.129 0.871 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.046 0.954 44 H -0.005 1.005 45 H 0.034 0.966 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.147 4.647 0.897 29.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.198 4.198 3 C 0.038 3.962 4 O -0.285 6.285 5 C 0.418 3.582 6 O -0.479 6.479 7 N -0.339 5.339 8 C -0.014 4.014 9 C -0.177 4.177 10 C 0.020 3.980 11 H 0.152 0.848 12 C 0.050 3.950 13 H 0.152 0.848 14 C -0.167 4.167 15 C -0.156 4.156 16 C 0.296 3.704 17 O -0.487 6.487 18 N -0.318 5.318 19 C 0.005 3.995 20 C -0.048 4.048 21 C -0.566 4.566 22 H 0.056 0.944 23 C -0.189 4.189 24 N -0.588 5.588 25 Si 0.773 3.227 26 H -0.176 1.176 27 H -0.213 1.213 28 H -0.187 1.187 29 H 0.144 0.856 30 H 0.128 0.872 31 H 0.137 0.863 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.116 0.884 35 H 0.071 0.929 36 H 0.109 0.891 37 H 0.148 0.852 38 H 0.122 0.878 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.064 0.936 44 H 0.013 0.987 45 H 0.052 0.948 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -28.836 4.639 0.266 29.208 hybrid contribution 0.909 0.117 -0.641 1.118 sum -27.927 4.756 -0.375 28.331 Atomic orbital electron populations 1.24148 0.94720 1.03957 0.95806 1.22656 0.96229 0.96891 1.03975 1.22131 0.85619 0.97893 0.90553 1.86280 1.43142 1.38893 1.60170 1.17600 0.79501 0.81555 0.79520 1.90943 1.73386 1.35339 1.48197 1.47146 1.28659 1.18532 1.39572 1.22164 0.98432 0.88512 0.92326 1.23272 0.95895 0.98874 0.99625 1.22601 0.90093 0.96723 0.88583 0.84797 1.21889 0.86968 0.87751 0.98438 0.84834 1.21784 1.03940 0.97693 0.93267 1.21468 0.95463 0.98274 1.00406 1.20657 0.86149 0.81305 0.82325 1.90712 1.48495 1.50671 1.58870 1.47444 1.29617 1.49365 1.05342 1.21361 0.84975 0.93189 0.99958 1.19668 0.93429 0.96142 0.95586 1.21282 0.94607 0.95571 1.45112 0.94409 1.25931 0.95522 1.03271 0.94208 1.70056 1.01991 1.38143 1.48598 0.85681 0.77302 0.79921 0.79830 1.17581 1.21322 1.18716 0.85592 0.87188 0.86284 0.90060 0.90889 0.88419 0.92946 0.89092 0.85235 0.87841 0.88681 0.90076 0.88450 0.88373 0.93565 0.98659 0.94796 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 14.31 67.78 0.97 -0.42 16 2 C -0.18 -2.44 9.90 25.64 0.25 -2.18 16 3 C 0.11 1.97 5.89 71.24 0.42 2.39 16 4 O -0.37 -8.22 9.81 -55.47 -0.54 -8.77 16 5 C 0.66 15.84 7.11 129.79 0.92 16.76 16 6 O -0.59 -15.94 13.37 19.80 0.26 -15.68 16 7 N -0.60 -12.15 2.82 -922.24 -2.60 -14.75 16 8 C 0.11 1.84 6.87 86.71 0.60 2.44 16 9 C -0.14 -2.13 6.38 31.88 0.20 -1.93 16 10 C 0.12 2.48 3.69 46.25 0.17 2.66 16 11 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 12 C 0.15 2.70 3.26 45.01 0.15 2.85 16 13 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 14 C -0.13 -2.74 4.95 30.36 0.15 -2.59 16 15 C -0.12 -3.32 5.59 29.72 0.17 -3.16 16 16 C 0.51 18.50 7.45 87.79 0.65 19.15 16 17 O -0.61 -28.91 16.17 -3.03 -0.05 -28.96 16 18 N -0.59 -18.57 2.52 -795.58 -2.01 -20.58 16 19 C 0.13 5.02 4.85 86.38 0.42 5.44 16 20 C -0.01 -0.47 4.35 29.84 0.13 -0.34 16 21 C -0.53 -30.50 9.66 25.60 0.25 -30.25 16 22 H 0.04 2.38 7.99 -2.91 -0.02 2.35 16 23 C 0.01 0.46 5.47 84.65 0.46 0.93 16 24 N -0.95 -59.58 13.96 21.45 0.30 -59.28 16 25 Si 0.95 44.96 27.47 68.60 1.88 46.85 16 26 H -0.25 -10.85 7.11 99.48 0.71 -10.14 16 27 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 28 H -0.26 -12.23 6.54 99.48 0.65 -11.58 16 29 H 0.13 0.75 8.06 -2.92 -0.02 0.72 16 30 H 0.11 0.81 7.90 -2.91 -0.02 0.78 16 31 H 0.12 1.62 8.06 -2.91 -0.02 1.60 16 32 H 0.08 1.30 7.86 -2.39 -0.02 1.29 16 33 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.09 1.68 5.89 -2.39 -0.01 1.66 16 37 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.10 2.26 6.27 -2.38 -0.01 2.25 16 39 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.08 2.45 6.11 -2.39 -0.01 2.43 16 41 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 42 H 0.10 3.33 5.90 -2.39 -0.01 3.31 16 43 H 0.05 2.15 7.13 -2.39 -0.02 2.13 16 44 H 0.00 -0.26 7.20 -2.39 -0.02 -0.28 16 45 H 0.03 1.45 7.57 -2.38 -0.02 1.43 16 46 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 Total: -1.00 -80.47 365.97 4.08 -76.40 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.92 Total: 13.02 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 5.91 Total: 11.75 kcal Atomic # 7 Polarization: -90.30 SS G_CDS: -4.31 Total: -94.61 kcal Atomic # 8 Polarization: -53.07 SS G_CDS: -0.33 Total: -53.40 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.85 kcal Total: -80.47 4.08 -76.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274346139.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.369 kcal (2) G-P(sol) polarization free energy of solvation -80.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.67 seconds