Wall clock time and date at job start Tue Mar 31 2020 15:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00186 * 2 1 4 4 O 1.45199 * 109.46928 * 135.00095 * 3 2 1 5 5 C 1.34642 * 116.99961 * 179.97438 * 4 3 2 6 6 O 1.21515 * 119.99602 * 0.02562 * 5 4 3 7 7 N 1.34772 * 120.00111 * 179.97438 * 5 4 3 8 8 C 1.47539 * 125.67126 * 359.70446 * 7 5 4 9 9 C 1.55387 * 104.85372 * 155.99146 * 8 7 5 10 10 C 1.53896 * 101.34199 * 36.06641 * 9 8 7 11 11 C 1.53373 * 111.15335 * 205.16184 * 10 9 8 12 12 C 1.54762 * 101.43968 * 214.91475 * 11 10 9 13 13 N 1.46905 * 105.53788 * 24.29479 * 12 11 10 14 14 C 1.46501 * 124.37843 * 163.24322 * 13 12 11 15 15 C 1.53003 * 109.46873 * 90.00417 * 14 13 12 16 16 C 1.50694 * 109.47151 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00215 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99894 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99829 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 120.00202 * 359.97438 * 18 16 15 21 21 H 1.48493 * 109.47296 * 90.00035 * 20 18 16 22 22 H 1.48505 * 109.47366 * 210.00255 * 20 18 16 23 23 H 1.48507 * 109.47044 * 330.00069 * 20 18 16 24 24 C 1.34843 * 111.24915 * 343.23070 * 13 12 11 25 25 O 1.21278 * 125.18542 * 181.15873 * 24 13 12 26 26 C 1.47346 * 125.67089 * 180.02562 * 7 5 4 27 27 H 1.07994 * 119.99999 * 180.02562 * 1 2 3 28 28 H 1.08003 * 119.99469 * 359.97438 * 1 2 3 29 29 H 1.08002 * 119.99954 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47152 * 15.00128 * 3 2 1 31 31 H 1.09001 * 109.46980 * 255.00228 * 3 2 1 32 32 H 1.09007 * 110.33730 * 274.97000 * 8 7 5 33 33 H 1.08996 * 110.34164 * 37.22064 * 8 7 5 34 34 H 1.08997 * 111.24994 * 277.99109 * 9 8 7 35 35 H 1.09003 * 110.95157 * 154.01271 * 9 8 7 36 36 H 1.08998 * 111.02682 * 332.95055 * 11 10 9 37 37 H 1.08994 * 111.02991 * 96.86977 * 11 10 9 38 38 H 1.08992 * 110.23368 * 143.31594 * 12 11 10 39 39 H 1.09001 * 110.23163 * 265.19803 * 12 11 10 40 40 H 1.09003 * 109.47123 * 210.00281 * 14 13 12 41 41 H 1.08994 * 109.46791 * 330.00797 * 14 13 12 42 42 H 1.09000 * 109.47221 * 300.00382 * 15 14 13 43 43 H 1.09003 * 109.47150 * 59.99950 * 15 14 13 44 44 H 0.96999 * 120.00227 * 179.97438 * 19 18 16 45 45 H 1.08993 * 109.97190 * 301.30857 * 26 7 5 46 46 H 1.09005 * 109.96704 * 62.53978 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1439 1.2402 0.9680 5 6 3.9197 2.3335 1.0924 6 8 3.6996 3.3153 0.4110 7 7 4.9396 2.3395 1.9733 8 6 5.3131 1.2246 2.8646 9 6 6.8163 1.4558 3.1832 10 6 6.8775 2.9918 3.2558 11 6 8.2891 3.5048 2.9452 12 6 8.3846 4.7297 3.8863 13 7 7.4296 4.4677 4.9714 14 6 7.4259 5.1693 6.2575 15 6 6.5327 6.4077 6.1603 16 6 6.5294 7.1297 7.4830 17 1 7.1063 6.7437 8.3104 18 6 5.7890 8.2825 7.6373 19 7 5.7857 8.9124 8.7918 20 14 4.7906 8.9498 6.2065 21 1 3.4260 8.3651 6.2397 22 1 4.6984 10.4281 6.3140 23 1 5.4537 8.5869 4.9282 24 6 6.5565 3.4983 4.6305 25 8 5.6500 3.0971 5.3291 26 6 5.8629 3.4628 2.2113 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5399 0.9354 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3856 2.1161 0.2660 31 1 2.4755 1.4868 -0.9927 32 1 4.7202 1.2554 3.7788 33 1 5.1767 0.2705 2.3555 34 1 7.4525 1.0764 2.3837 35 1 7.0853 1.0080 4.1400 36 1 9.0413 2.7576 3.1984 37 1 8.3750 3.8058 1.9012 38 1 9.3944 4.8200 4.2864 39 1 8.1090 5.6385 3.3511 40 1 7.0432 4.5052 7.0325 41 1 8.4421 5.4731 6.5084 42 1 6.9153 7.0717 5.3852 43 1 5.5164 6.1039 5.9092 44 1 5.2652 9.7236 8.9003 45 1 6.3759 3.7255 1.2862 46 1 5.3117 4.3242 2.5886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274346375.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:42 Heat of formation + Delta-G solvation = -81.961340 kcal Electronic energy + Delta-G solvation = -27644.972849 eV Core-core repulsion = 23728.617056 eV Total energy + Delta-G solvation = -3916.355793 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.36734 -40.27131 -37.82666 -36.49604 -36.20736 -34.37564 -33.95653 -32.49758 -30.79990 -29.50967 -28.42921 -27.05232 -25.50200 -24.64073 -22.91773 -21.81935 -20.89865 -20.44713 -20.35317 -18.94811 -18.12102 -17.25391 -17.06145 -16.98072 -16.26048 -15.73315 -15.54536 -15.15285 -14.92137 -14.26051 -14.18197 -13.95780 -13.80700 -13.45302 -13.25003 -13.19474 -12.92818 -12.77620 -12.73959 -12.56458 -12.45070 -12.13904 -11.77871 -11.60587 -11.54234 -11.19291 -11.09264 -11.02624 -10.97990 -10.71091 -10.45269 -10.14542 -9.90134 -9.84625 -9.44182 -9.24652 -8.93848 -8.56921 -8.25424 -6.08229 -4.07494 1.45724 2.13082 2.67406 2.73482 3.31449 3.31641 3.38514 3.41923 3.71545 4.02774 4.13264 4.26219 4.43324 4.50101 4.59310 4.66938 4.76475 4.96473 5.01857 5.08504 5.13440 5.19671 5.26239 5.36576 5.37512 5.40038 5.52310 5.54981 5.61544 5.66852 5.82956 5.84057 5.87491 5.93715 6.08370 6.09435 6.22762 6.25553 6.54660 6.73809 7.13409 7.24462 7.27678 7.53539 7.72442 8.10012 8.41918 8.47533 8.94406 9.53820 11.04732 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.013113 B = 0.003198 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.841894 B = 8752.135565 C =10014.153262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.159 4.159 3 C 0.114 3.886 4 O -0.363 6.363 5 C 0.667 3.333 6 O -0.572 6.572 7 N -0.600 5.600 8 C 0.104 3.896 9 C -0.106 4.106 10 C -0.114 4.114 11 C -0.117 4.117 12 C 0.098 3.902 13 N -0.613 5.613 14 C 0.137 3.863 15 C -0.025 4.025 16 C -0.522 4.522 17 H 0.074 0.926 18 C 0.071 3.929 19 N -0.900 5.900 20 Si 0.880 3.120 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.267 1.267 24 C 0.526 3.474 25 O -0.518 6.518 26 C 0.154 3.846 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.017 0.983 43 H 0.015 0.985 44 H 0.264 0.736 45 H 0.086 0.914 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.507 -19.323 -19.576 27.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C 0.040 3.960 4 O -0.278 6.278 5 C 0.422 3.578 6 O -0.462 6.462 7 N -0.340 5.340 8 C -0.019 4.019 9 C -0.144 4.144 10 C -0.119 4.119 11 C -0.155 4.155 12 C -0.026 4.026 13 N -0.346 5.346 14 C 0.017 3.983 15 C -0.063 4.063 16 C -0.560 4.560 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.539 5.539 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.191 1.191 24 C 0.312 3.688 25 O -0.394 6.394 26 C 0.032 3.968 27 H 0.127 0.873 28 H 0.119 0.881 29 H 0.138 0.862 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.036 0.964 43 H 0.034 0.966 44 H 0.074 0.926 45 H 0.104 0.896 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.761 -19.039 -19.317 27.133 hybrid contribution -0.645 0.689 -0.668 1.156 sum 0.116 -18.350 -19.985 27.131 Atomic orbital electron populations 1.23924 0.95394 1.02747 0.98357 1.22679 0.95669 0.97649 1.01670 1.21975 0.86153 0.96720 0.91197 1.86245 1.42577 1.39168 1.59760 1.17390 0.79147 0.81487 0.79773 1.91013 1.72525 1.34716 1.47907 1.47080 1.29870 1.17864 1.39233 1.22539 0.95480 0.89401 0.94430 1.22616 0.95951 0.92349 1.03524 1.21597 0.96929 0.98078 0.95253 1.22570 0.94168 0.97873 1.00892 1.22161 0.94112 0.97861 0.88427 1.48707 1.31645 1.37273 1.16971 1.21618 1.01111 0.94469 0.81070 1.19901 0.95213 0.92958 0.98266 1.20940 1.29901 1.08655 0.96534 0.90772 1.24966 0.96079 0.96477 0.95584 1.69901 1.41585 1.18638 1.23745 0.86785 0.81119 0.77941 0.83471 1.20208 1.21267 1.19146 1.19953 0.81862 0.79966 0.87062 1.90720 1.30497 1.61032 1.57128 1.21606 0.89188 0.88475 0.97491 0.87276 0.88059 0.86164 0.90524 0.90151 0.89715 0.89956 0.89375 0.88896 0.89130 0.88809 0.90002 0.90873 0.90475 0.90799 0.96442 0.96620 0.92614 0.89635 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 14.31 29.01 0.42 -0.67 16 2 C -0.16 -1.23 9.90 -36.02 -0.36 -1.58 16 3 C 0.11 1.15 5.89 36.01 0.21 1.36 16 4 O -0.36 -4.59 9.74 -40.33 -0.39 -4.98 16 5 C 0.67 9.85 8.62 54.05 0.47 10.31 16 6 O -0.57 -9.95 16.46 -19.28 -0.32 -10.27 16 7 N -0.60 -7.99 3.34 -176.43 -0.59 -8.57 16 8 C 0.10 1.14 6.69 -2.21 -0.01 1.13 16 9 C -0.11 -0.97 5.89 -25.00 -0.15 -1.12 16 10 C -0.11 -1.31 0.66 -155.33 -0.10 -1.41 16 11 C -0.12 -0.96 6.26 -25.61 -0.16 -1.12 16 12 C 0.10 1.09 7.37 -2.89 -0.02 1.07 16 13 N -0.61 -9.90 2.95 -172.55 -0.51 -10.41 16 14 C 0.14 2.69 5.88 -4.04 -0.02 2.67 16 15 C -0.03 -0.61 4.36 -27.88 -0.12 -0.73 16 16 C -0.52 -14.88 9.66 -34.44 -0.33 -15.21 16 17 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 18 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 19 N -0.90 -27.89 13.96 55.43 0.77 -27.11 16 20 Si 0.88 22.41 27.47 -169.99 -4.67 17.74 16 21 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 23 H -0.27 -6.54 6.54 56.52 0.37 -6.17 16 24 C 0.53 8.67 6.64 -11.30 -0.08 8.60 16 25 O -0.52 -10.65 16.76 5.56 0.09 -10.55 16 26 C 0.15 1.97 6.14 -3.56 -0.02 1.94 16 27 H 0.11 0.53 8.06 -52.49 -0.42 0.10 16 28 H 0.10 0.62 7.90 -52.48 -0.41 0.20 16 29 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.08 0.80 7.86 -51.93 -0.41 0.39 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.08 1.11 7.63 -51.92 -0.40 0.71 16 33 H 0.08 0.74 8.04 -51.93 -0.42 0.32 16 34 H 0.09 0.58 8.06 -51.93 -0.42 0.16 16 35 H 0.09 0.85 8.00 -51.93 -0.42 0.43 16 36 H 0.09 0.58 7.94 -51.93 -0.41 0.16 16 37 H 0.09 0.57 7.43 -51.93 -0.39 0.19 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.62 7.96 -51.93 -0.41 1.21 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 43 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 44 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 45 H 0.09 0.92 7.41 -51.93 -0.38 0.53 16 46 H 0.08 1.19 7.84 -51.93 -0.41 0.79 16 LS Contribution 380.99 15.07 5.74 5.74 Total: -1.00 -36.42 380.99 -7.61 -44.04 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -7.36 Total: -2.85 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -0.38 Total: 7.23 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: -0.32 Total: -46.09 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.62 Total: -25.81 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.67 Total: 17.74 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.42 -7.61 -44.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274346375.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.924 kcal (2) G-P(sol) polarization free energy of solvation -36.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds