Wall clock time and date at job start Tue Mar 31 2020 15:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00186 * 2 1 4 4 O 1.45199 * 109.46928 * 135.00095 * 3 2 1 5 5 C 1.34642 * 116.99961 * 179.97438 * 4 3 2 6 6 O 1.21515 * 119.99602 * 0.02562 * 5 4 3 7 7 N 1.34772 * 120.00111 * 179.97438 * 5 4 3 8 8 C 1.47539 * 125.67126 * 359.70446 * 7 5 4 9 9 C 1.55387 * 104.85372 * 155.99146 * 8 7 5 10 10 C 1.53896 * 101.34199 * 36.06641 * 9 8 7 11 11 C 1.53373 * 111.15335 * 205.16184 * 10 9 8 12 12 C 1.54762 * 101.43968 * 214.91475 * 11 10 9 13 13 N 1.46905 * 105.53788 * 24.29479 * 12 11 10 14 14 C 1.46501 * 124.37843 * 163.24322 * 13 12 11 15 15 C 1.53003 * 109.46873 * 90.00417 * 14 13 12 16 16 C 1.50694 * 109.47151 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00215 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99894 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99829 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 120.00202 * 359.97438 * 18 16 15 21 21 H 1.48493 * 109.47296 * 90.00035 * 20 18 16 22 22 H 1.48505 * 109.47366 * 210.00255 * 20 18 16 23 23 H 1.48507 * 109.47044 * 330.00069 * 20 18 16 24 24 C 1.34843 * 111.24915 * 343.23070 * 13 12 11 25 25 O 1.21278 * 125.18542 * 181.15873 * 24 13 12 26 26 C 1.47346 * 125.67089 * 180.02562 * 7 5 4 27 27 H 1.07994 * 119.99999 * 180.02562 * 1 2 3 28 28 H 1.08003 * 119.99469 * 359.97438 * 1 2 3 29 29 H 1.08002 * 119.99954 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47152 * 15.00128 * 3 2 1 31 31 H 1.09001 * 109.46980 * 255.00228 * 3 2 1 32 32 H 1.09007 * 110.33730 * 274.97000 * 8 7 5 33 33 H 1.08996 * 110.34164 * 37.22064 * 8 7 5 34 34 H 1.08997 * 111.24994 * 277.99109 * 9 8 7 35 35 H 1.09003 * 110.95157 * 154.01271 * 9 8 7 36 36 H 1.08998 * 111.02682 * 332.95055 * 11 10 9 37 37 H 1.08994 * 111.02991 * 96.86977 * 11 10 9 38 38 H 1.08992 * 110.23368 * 143.31594 * 12 11 10 39 39 H 1.09001 * 110.23163 * 265.19803 * 12 11 10 40 40 H 1.09003 * 109.47123 * 210.00281 * 14 13 12 41 41 H 1.08994 * 109.46791 * 330.00797 * 14 13 12 42 42 H 1.09000 * 109.47221 * 300.00382 * 15 14 13 43 43 H 1.09003 * 109.47150 * 59.99950 * 15 14 13 44 44 H 0.96999 * 120.00227 * 179.97438 * 19 18 16 45 45 H 1.08993 * 109.97190 * 301.30857 * 26 7 5 46 46 H 1.09005 * 109.96704 * 62.53978 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1439 1.2402 0.9680 5 6 3.9197 2.3335 1.0924 6 8 3.6996 3.3153 0.4110 7 7 4.9396 2.3395 1.9733 8 6 5.3131 1.2246 2.8646 9 6 6.8163 1.4558 3.1832 10 6 6.8775 2.9918 3.2558 11 6 8.2891 3.5048 2.9452 12 6 8.3846 4.7297 3.8863 13 7 7.4296 4.4677 4.9714 14 6 7.4259 5.1693 6.2575 15 6 6.5327 6.4077 6.1603 16 6 6.5294 7.1297 7.4830 17 1 7.1063 6.7437 8.3104 18 6 5.7890 8.2825 7.6373 19 7 5.7857 8.9124 8.7918 20 14 4.7906 8.9498 6.2065 21 1 3.4260 8.3651 6.2397 22 1 4.6984 10.4281 6.3140 23 1 5.4537 8.5869 4.9282 24 6 6.5565 3.4983 4.6305 25 8 5.6500 3.0971 5.3291 26 6 5.8629 3.4628 2.2113 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5399 0.9354 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3856 2.1161 0.2660 31 1 2.4755 1.4868 -0.9927 32 1 4.7202 1.2554 3.7788 33 1 5.1767 0.2705 2.3555 34 1 7.4525 1.0764 2.3837 35 1 7.0853 1.0080 4.1400 36 1 9.0413 2.7576 3.1984 37 1 8.3750 3.8058 1.9012 38 1 9.3944 4.8200 4.2864 39 1 8.1090 5.6385 3.3511 40 1 7.0432 4.5052 7.0325 41 1 8.4421 5.4731 6.5084 42 1 6.9153 7.0717 5.3852 43 1 5.5164 6.1039 5.9092 44 1 5.2652 9.7236 8.9003 45 1 6.3759 3.7255 1.2862 46 1 5.3117 4.3242 2.5886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274346375.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:41 Heat of formation + Delta-G solvation = -106.889017 kcal Electronic energy + Delta-G solvation = -27646.053795 eV Core-core repulsion = 23728.617056 eV Total energy + Delta-G solvation = -3917.436738 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.41464 -41.35289 -38.88555 -37.60126 -37.48378 -35.73732 -35.00479 -34.17198 -32.22177 -30.70226 -29.43950 -27.86825 -27.14132 -25.70177 -23.91508 -23.25272 -22.02512 -21.67777 -21.03009 -20.12571 -19.15062 -19.10001 -18.24921 -18.00006 -17.29964 -17.16055 -16.59905 -16.28321 -16.05103 -15.99794 -15.10641 -15.07743 -14.84039 -14.74634 -14.59943 -14.40481 -14.12333 -13.99257 -13.74496 -13.69705 -13.52824 -13.23833 -13.04815 -13.00028 -12.60828 -12.37632 -12.19544 -12.12098 -12.00699 -11.89893 -11.85440 -11.77860 -11.71184 -11.54016 -10.85731 -10.64905 -10.50419 -9.96692 -9.61312 -8.37570 -6.41557 0.67166 1.26566 1.29048 1.37418 1.39042 1.50088 1.56752 2.09264 2.27054 2.82779 2.97652 3.15758 3.23746 3.39717 3.79432 3.83106 3.92163 3.99555 4.18658 4.20484 4.26162 4.31370 4.35929 4.44523 4.49732 4.51271 4.56435 4.68237 4.76707 4.77255 4.81738 4.88846 4.97775 5.02854 5.11945 5.12682 5.16817 5.20233 5.27240 5.46115 5.54584 5.64082 5.71524 6.16858 6.20684 6.25008 6.65036 7.01977 7.15415 7.23813 8.78624 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.013113 B = 0.003198 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.841894 B = 8752.135565 C =10014.153262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.173 4.173 3 C 0.108 3.892 4 O -0.363 6.363 5 C 0.662 3.338 6 O -0.606 6.606 7 N -0.601 5.601 8 C 0.099 3.901 9 C -0.093 4.093 10 C -0.105 4.105 11 C -0.098 4.098 12 C 0.085 3.915 13 N -0.619 5.619 14 C 0.148 3.852 15 C -0.016 4.016 16 C -0.530 4.530 17 H 0.044 0.956 18 C 0.014 3.986 19 N -0.943 5.943 20 Si 0.942 3.058 21 H -0.281 1.281 22 H -0.274 1.274 23 H -0.250 1.250 24 C 0.511 3.489 25 O -0.573 6.573 26 C 0.151 3.849 27 H 0.131 0.869 28 H 0.102 0.898 29 H 0.132 0.868 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.106 0.894 34 H 0.131 0.869 35 H 0.094 0.906 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.052 0.948 41 H 0.094 0.906 42 H 0.028 0.972 43 H -0.008 1.008 44 H 0.268 0.732 45 H 0.115 0.885 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.086 -20.907 -22.744 31.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.191 4.191 3 C 0.034 3.966 4 O -0.277 6.277 5 C 0.417 3.583 6 O -0.498 6.498 7 N -0.342 5.342 8 C -0.022 4.022 9 C -0.131 4.131 10 C -0.109 4.109 11 C -0.135 4.135 12 C -0.036 4.036 13 N -0.351 5.351 14 C 0.026 3.974 15 C -0.055 4.055 16 C -0.569 4.569 17 H 0.062 0.938 18 C -0.184 4.184 19 N -0.583 5.583 20 Si 0.766 3.234 21 H -0.207 1.207 22 H -0.199 1.199 23 H -0.173 1.173 24 C 0.299 3.701 25 O -0.452 6.452 26 C 0.029 3.971 27 H 0.149 0.851 28 H 0.120 0.880 29 H 0.150 0.850 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.125 0.875 34 H 0.150 0.850 35 H 0.113 0.887 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.124 0.876 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.113 0.887 42 H 0.046 0.954 43 H 0.010 0.990 44 H 0.077 0.923 45 H 0.132 0.868 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.383 -20.643 -22.510 30.635 hybrid contribution -1.204 1.163 0.418 1.726 sum 1.179 -19.480 -22.092 29.477 Atomic orbital electron populations 1.24171 0.95039 1.03838 0.96150 1.22668 0.96019 0.96824 1.03605 1.22202 0.85558 0.97981 0.90842 1.86261 1.42822 1.38213 1.60378 1.17622 0.79421 0.81500 0.79780 1.90976 1.73485 1.35950 1.49439 1.47265 1.29484 1.18633 1.38774 1.22653 0.96688 0.89811 0.93058 1.22711 0.94882 0.90356 1.05176 1.21545 0.98541 0.99693 0.91114 1.22699 0.92058 0.96808 1.01936 1.22574 0.93919 0.99583 0.87546 1.48786 1.32843 1.36630 1.16797 1.21173 1.00888 0.92412 0.82902 1.19762 0.95011 0.94696 0.95983 1.21279 1.29056 1.08848 0.97667 0.93756 1.25844 0.97351 0.96998 0.98249 1.70025 1.42911 1.19451 1.25900 0.85794 0.79077 0.77788 0.80763 1.20729 1.19875 1.17328 1.20951 0.80793 0.79563 0.88777 1.90683 1.32654 1.62687 1.59216 1.21717 0.89166 0.87302 0.98894 0.85128 0.88011 0.84982 0.91549 0.89764 0.92782 0.87545 0.85040 0.88736 0.85951 0.85458 0.87616 0.90867 0.92920 0.88742 0.95383 0.98969 0.92275 0.86756 0.94299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 14.31 67.78 0.97 -0.78 16 2 C -0.17 -2.47 9.90 25.65 0.25 -2.22 16 3 C 0.11 2.16 5.89 71.24 0.42 2.57 16 4 O -0.36 -9.06 9.74 -55.51 -0.54 -9.60 16 5 C 0.66 19.40 8.62 129.79 1.12 20.52 16 6 O -0.61 -21.25 16.46 19.79 0.33 -20.93 16 7 N -0.60 -15.45 3.34 -942.51 -3.15 -18.59 16 8 C 0.10 2.05 6.69 87.00 0.58 2.63 16 9 C -0.09 -1.38 5.89 31.72 0.19 -1.20 16 10 C -0.10 -2.12 0.66 -52.71 -0.03 -2.16 16 11 C -0.10 -1.09 6.26 31.32 0.20 -0.89 16 12 C 0.09 1.61 7.37 86.90 0.64 2.25 16 13 N -0.62 -19.33 2.95 -818.19 -2.41 -21.75 16 14 C 0.15 5.87 5.88 86.38 0.51 6.37 16 15 C -0.02 -0.79 4.36 29.85 0.13 -0.66 16 16 C -0.53 -31.14 9.66 25.60 0.25 -30.89 16 17 H 0.04 2.79 7.99 -2.91 -0.02 2.77 16 18 C 0.01 0.81 5.47 84.65 0.46 1.27 16 19 N -0.94 -59.87 13.96 21.45 0.30 -59.57 16 20 Si 0.94 46.69 27.47 68.60 1.88 48.57 16 21 H -0.28 -14.10 7.11 99.48 0.71 -13.40 16 22 H -0.27 -12.91 7.11 99.48 0.71 -12.21 16 23 H -0.25 -11.56 6.54 99.48 0.65 -10.91 16 24 C 0.51 16.70 6.64 87.42 0.58 17.28 16 25 O -0.57 -24.55 16.76 -3.02 -0.05 -24.60 16 26 C 0.15 3.61 6.14 86.23 0.53 4.14 16 27 H 0.13 0.93 8.06 -2.91 -0.02 0.90 16 28 H 0.10 1.13 7.90 -2.91 -0.02 1.11 16 29 H 0.13 1.55 8.06 -2.91 -0.02 1.53 16 30 H 0.07 1.43 7.86 -2.39 -0.02 1.41 16 31 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.05 1.45 7.63 -2.38 -0.02 1.43 16 33 H 0.11 1.66 8.04 -2.39 -0.02 1.64 16 34 H 0.13 0.91 8.06 -2.39 -0.02 0.89 16 35 H 0.09 1.45 8.00 -2.39 -0.02 1.43 16 36 H 0.12 0.71 7.94 -2.39 -0.02 0.70 16 37 H 0.13 0.71 7.43 -2.39 -0.02 0.69 16 38 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.05 2.31 7.96 -2.39 -0.02 2.30 16 41 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 42 H 0.03 1.31 7.20 -2.39 -0.02 1.29 16 43 H -0.01 -0.43 7.57 -2.39 -0.02 -0.45 16 44 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 45 H 0.11 2.07 7.41 -2.39 -0.02 2.06 16 46 H 0.04 1.22 7.84 -2.38 -0.02 1.20 16 Total: -1.00 -85.06 380.99 4.05 -81.00 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 0.90 Total: 7.22 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 6.79 Total: 18.24 kcal Atomic # 7 Polarization: -94.65 SS G_CDS: -5.26 Total: -99.91 kcal Atomic # 8 Polarization: -54.86 SS G_CDS: -0.27 Total: -55.13 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 1.88 Total: 48.57 kcal Total: -85.06 4.05 -81.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274346375.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.885 kcal (2) G-P(sol) polarization free energy of solvation -85.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds