Wall clock time and date at job start Tue Mar 31 2020 15:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47286 * 2 1 4 4 O 1.42896 * 109.46820 * 120.00163 * 2 1 3 5 5 C 1.42904 * 113.99926 * 149.99986 * 4 2 1 6 6 C 1.53004 * 109.47101 * 179.97438 * 5 4 2 7 7 N 1.46504 * 109.47013 * 65.00303 * 6 5 4 8 8 C 1.34776 * 119.99835 * 180.02562 * 7 6 5 9 9 O 1.21586 * 120.00194 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99844 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00093 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47192 * 180.02562 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.98024 * 12 11 10 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46814 * 90.00164 * 22 20 18 24 24 H 1.48501 * 109.47378 * 210.00272 * 22 20 18 25 25 H 1.48503 * 109.47143 * 330.00397 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99825 * 12 11 10 27 27 H 1.09001 * 109.47200 * 300.00116 * 1 2 3 28 28 H 1.09005 * 109.47052 * 59.99964 * 1 2 3 29 29 H 1.09003 * 109.47392 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47200 * 239.99884 * 2 1 3 31 31 H 1.08995 * 109.47205 * 299.99965 * 3 2 1 32 32 H 1.09001 * 109.47096 * 59.99820 * 3 2 1 33 33 H 1.09003 * 109.47271 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47265 * 59.99810 * 5 4 2 35 35 H 1.08998 * 109.46992 * 299.99387 * 5 4 2 36 36 H 1.08997 * 109.47025 * 305.00051 * 6 5 4 37 37 H 1.08995 * 109.46911 * 184.99783 * 6 5 4 38 38 H 0.97005 * 119.99925 * 359.97438 * 7 6 5 39 39 H 0.97004 * 119.99718 * 0.02562 * 10 8 7 40 40 H 1.09002 * 109.46490 * 60.00223 * 11 10 8 41 41 H 1.08992 * 109.46880 * 300.00477 * 11 10 8 42 42 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 43 43 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 44 44 H 1.08001 * 120.03256 * 180.31909 * 15 14 13 45 45 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 46 46 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0062 -0.6737 1.1667 5 6 3.2659 -1.3246 0.9886 6 6 3.6759 -2.0082 2.2946 7 7 2.7262 -3.0800 2.6038 8 6 2.8883 -3.8239 3.7159 9 8 3.8230 -3.6059 4.4622 10 7 2.0143 -4.8096 4.0006 11 6 2.1908 -5.6187 5.2091 12 6 1.0890 -6.6433 5.2931 13 6 -0.0899 -6.3380 5.9493 14 6 -1.1030 -7.2757 6.0289 15 6 -0.9432 -8.5183 5.4474 16 6 0.2411 -8.8298 4.7929 17 8 0.4035 -10.0524 4.2256 18 6 -0.5717 -10.9593 4.4361 19 1 -1.4696 -10.6740 4.9640 20 6 -0.4218 -12.2582 3.9747 21 7 0.6722 -12.6058 3.3321 22 14 -1.7727 -13.5149 4.2669 23 1 -2.7294 -13.4861 3.1315 24 1 -1.1737 -14.8694 4.3754 25 1 -2.4889 -13.1880 5.5261 26 6 1.2573 -7.8860 4.7152 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4424 0.0005 34 1 4.0199 -0.5875 0.7125 35 1 3.1808 -2.0708 0.1987 36 1 3.6749 -1.2773 3.1031 37 1 4.6756 -2.4288 2.1862 38 1 1.9802 -3.2537 2.0085 39 1 1.2688 -4.9838 3.4049 40 1 2.1549 -4.9732 6.0868 41 1 3.1552 -6.1250 5.1697 42 1 -0.2192 -5.3652 6.4004 43 1 -2.0220 -7.0345 6.5423 44 1 -1.7369 -9.2484 5.5055 45 1 0.7772 -13.5146 3.0096 46 1 2.1782 -8.1240 4.2037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330435231.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:57 Heat of formation + Delta-G solvation = -88.815699 kcal Electronic energy + Delta-G solvation = -25859.666040 eV Core-core repulsion = 21943.013020 eV Total energy + Delta-G solvation = -3916.653020 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.98592 -39.10735 -38.73284 -36.84457 -35.18762 -34.33549 -32.91609 -32.32784 -30.86591 -29.35784 -28.83664 -27.61630 -25.83787 -25.02245 -22.84160 -21.73990 -21.69489 -20.94744 -20.74450 -18.58394 -17.62935 -17.39000 -16.99777 -16.45758 -15.72034 -15.46372 -15.25749 -15.07160 -14.64611 -14.47861 -14.43773 -14.06803 -13.74134 -13.60677 -13.42865 -13.24950 -12.93325 -12.80367 -12.62477 -12.48693 -12.35939 -12.05453 -11.87580 -11.66771 -11.57119 -11.36823 -11.09965 -10.92457 -10.80465 -10.68454 -10.47481 -10.18685 -9.97366 -9.40176 -9.24689 -8.88936 -8.70613 -8.23479 -7.31722 -6.48705 -4.08171 1.89167 2.28216 2.89517 3.10254 3.11490 3.16111 3.20811 3.33929 3.92897 4.30195 4.39966 4.56598 4.61605 4.67950 4.77523 4.83094 4.96169 4.96830 5.07999 5.17118 5.20966 5.31158 5.37006 5.43105 5.52972 5.55817 5.61639 5.76903 5.80438 5.80961 5.87550 5.96886 6.09168 6.26931 6.41445 6.57367 6.61774 6.83276 6.83539 6.96781 7.02895 7.21424 7.29014 7.36727 7.72455 7.95488 8.10290 8.69208 8.96697 9.65706 10.69087 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016097 B = 0.002029 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.055870 B =13799.097538 C =14268.478582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.080 3.920 3 C -0.175 4.175 4 O -0.379 6.379 5 C 0.049 3.951 6 C 0.144 3.856 7 N -0.744 5.744 8 C 0.704 3.296 9 O -0.598 6.598 10 N -0.736 5.736 11 C 0.187 3.813 12 C -0.072 4.072 13 C -0.194 4.194 14 C -0.077 4.077 15 C -0.226 4.226 16 C 0.150 3.850 17 O -0.177 6.177 18 C -0.393 4.393 19 H 0.092 0.908 20 C 0.039 3.961 21 N -0.861 5.861 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.170 4.170 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.399 0.601 39 H 0.399 0.601 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.127 0.873 45 H 0.270 0.730 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.482 22.683 -6.627 23.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.022 3.978 3 C -0.233 4.233 4 O -0.299 6.299 5 C -0.028 4.028 6 C 0.019 3.981 7 N -0.401 5.401 8 C 0.403 3.597 9 O -0.477 6.477 10 N -0.391 5.391 11 C 0.064 3.936 12 C -0.073 4.073 13 C -0.213 4.213 14 C -0.095 4.095 15 C -0.245 4.245 16 C 0.096 3.904 17 O -0.080 6.080 18 C -0.469 4.469 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.496 5.496 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.202 1.202 25 H -0.192 1.192 26 C -0.190 4.190 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.233 0.767 39 H 0.233 0.767 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.145 0.855 45 H 0.080 0.920 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.554 22.567 -6.001 23.403 hybrid contribution -1.326 -0.807 -0.666 1.689 sum 0.228 21.761 -6.668 22.760 Atomic orbital electron populations 1.21869 0.93448 1.02939 1.02556 1.22099 0.95178 0.92427 0.88062 1.22302 1.01472 0.96855 1.02673 1.88001 1.36279 1.69955 1.35622 1.22834 0.86653 0.95864 0.97456 1.21166 0.92401 0.88618 0.95912 1.44988 1.32343 1.36737 1.26030 1.15936 0.82685 0.79551 0.81480 1.90908 1.33446 1.72519 1.50811 1.45240 1.30600 1.35517 1.27755 1.19989 0.96869 0.90516 0.86266 1.19290 0.94889 0.93690 0.99422 1.20497 0.94611 0.99600 1.06597 1.20747 0.97804 0.93169 0.97790 1.21236 0.99213 0.98335 1.05734 1.19330 0.92742 0.87220 0.91122 1.83982 1.44888 1.17031 1.62117 1.21320 0.97528 0.89433 1.38623 0.89051 1.25296 0.98009 0.96965 0.96246 1.70034 1.25476 1.19538 1.34546 0.85709 0.79428 0.79238 0.79038 1.19880 1.20230 1.19180 1.20097 0.99149 0.93024 1.06709 0.91716 0.91296 0.91815 0.92200 0.91680 0.91692 0.92517 0.91668 0.92468 0.90852 0.90162 0.76737 0.76746 0.91142 0.91057 0.87466 0.87303 0.85496 0.91973 0.86381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.56 37.16 0.36 -0.56 16 2 C 0.08 0.52 3.34 -26.74 -0.09 0.43 16 3 C -0.18 -0.98 9.53 37.15 0.35 -0.63 16 4 O -0.38 -3.24 9.93 -35.23 -0.35 -3.59 16 5 C 0.05 0.34 5.88 37.16 0.22 0.56 16 6 C 0.14 1.35 6.06 -4.04 -0.02 1.33 16 7 N -0.74 -8.18 5.51 -65.22 -0.36 -8.54 16 8 C 0.70 10.29 8.57 -86.91 -0.74 9.55 16 9 O -0.60 -10.98 16.34 5.29 0.09 -10.90 16 10 N -0.74 -10.16 5.55 -66.42 -0.37 -10.53 16 11 C 0.19 2.86 5.80 -5.19 -0.03 2.83 16 12 C -0.07 -1.24 5.25 -104.65 -0.55 -1.79 16 13 C -0.19 -3.21 9.70 -39.53 -0.38 -3.59 16 14 C -0.08 -1.35 10.04 -39.61 -0.40 -1.75 16 15 C -0.23 -4.73 9.17 -39.40 -0.36 -5.09 16 16 C 0.15 3.50 6.65 -39.11 -0.26 3.24 16 17 O -0.18 -4.94 9.76 0.05 0.00 -4.94 16 18 C -0.39 -10.77 9.49 30.89 0.29 -10.48 16 19 H 0.09 2.31 5.21 -52.49 -0.27 2.04 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -24.95 13.67 55.48 0.76 -24.19 16 22 Si 0.94 20.20 29.55 -169.99 -5.02 15.18 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 24 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 25 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 26 C -0.17 -3.46 9.65 -39.39 -0.38 -3.84 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.33 7.79 -51.93 -0.40 -0.07 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.30 7.87 -51.93 -0.41 -0.11 16 34 H 0.07 0.35 7.87 -51.93 -0.41 -0.05 16 35 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.40 3.62 8.49 -40.82 -0.35 3.27 16 39 H 0.40 4.87 8.48 -40.82 -0.35 4.53 16 40 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 41 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 42 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 43 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 44 H 0.13 2.67 5.64 -52.49 -0.30 2.37 16 45 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 46 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 390.87 15.07 5.89 5.89 Total: -1.00 -32.93 390.87 -8.57 -41.50 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -7.11 Total: 8.93 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -2.09 Total: -8.82 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: 0.03 Total: -43.26 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.26 Total: -19.42 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.93 -8.57 -41.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330435231.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.317 kcal (2) G-P(sol) polarization free energy of solvation -32.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds