Wall clock time and date at job start Tue Mar 31 2020 15:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47286 * 2 1 4 4 O 1.42896 * 109.46820 * 120.00163 * 2 1 3 5 5 C 1.42904 * 113.99926 * 149.99986 * 4 2 1 6 6 C 1.53004 * 109.47101 * 179.97438 * 5 4 2 7 7 N 1.46504 * 109.47013 * 65.00303 * 6 5 4 8 8 C 1.34776 * 119.99835 * 180.02562 * 7 6 5 9 9 O 1.21586 * 120.00194 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99844 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00093 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47192 * 180.02562 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.98024 * 12 11 10 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46814 * 90.00164 * 22 20 18 24 24 H 1.48501 * 109.47378 * 210.00272 * 22 20 18 25 25 H 1.48503 * 109.47143 * 330.00397 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99825 * 12 11 10 27 27 H 1.09001 * 109.47200 * 300.00116 * 1 2 3 28 28 H 1.09005 * 109.47052 * 59.99964 * 1 2 3 29 29 H 1.09003 * 109.47392 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47200 * 239.99884 * 2 1 3 31 31 H 1.08995 * 109.47205 * 299.99965 * 3 2 1 32 32 H 1.09001 * 109.47096 * 59.99820 * 3 2 1 33 33 H 1.09003 * 109.47271 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47265 * 59.99810 * 5 4 2 35 35 H 1.08998 * 109.46992 * 299.99387 * 5 4 2 36 36 H 1.08997 * 109.47025 * 305.00051 * 6 5 4 37 37 H 1.08995 * 109.46911 * 184.99783 * 6 5 4 38 38 H 0.97005 * 119.99925 * 359.97438 * 7 6 5 39 39 H 0.97004 * 119.99718 * 0.02562 * 10 8 7 40 40 H 1.09002 * 109.46490 * 60.00223 * 11 10 8 41 41 H 1.08992 * 109.46880 * 300.00477 * 11 10 8 42 42 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 43 43 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 44 44 H 1.08001 * 120.03256 * 180.31909 * 15 14 13 45 45 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 46 46 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0062 -0.6737 1.1667 5 6 3.2659 -1.3246 0.9886 6 6 3.6759 -2.0082 2.2946 7 7 2.7262 -3.0800 2.6038 8 6 2.8883 -3.8239 3.7159 9 8 3.8230 -3.6059 4.4622 10 7 2.0143 -4.8096 4.0006 11 6 2.1908 -5.6187 5.2091 12 6 1.0890 -6.6433 5.2931 13 6 -0.0899 -6.3380 5.9493 14 6 -1.1030 -7.2757 6.0289 15 6 -0.9432 -8.5183 5.4474 16 6 0.2411 -8.8298 4.7929 17 8 0.4035 -10.0524 4.2256 18 6 -0.5717 -10.9593 4.4361 19 1 -1.4696 -10.6740 4.9640 20 6 -0.4218 -12.2582 3.9747 21 7 0.6722 -12.6058 3.3321 22 14 -1.7727 -13.5149 4.2669 23 1 -2.7294 -13.4861 3.1315 24 1 -1.1737 -14.8694 4.3754 25 1 -2.4889 -13.1880 5.5261 26 6 1.2573 -7.8860 4.7152 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4424 0.0005 34 1 4.0199 -0.5875 0.7125 35 1 3.1808 -2.0708 0.1987 36 1 3.6749 -1.2773 3.1031 37 1 4.6756 -2.4288 2.1862 38 1 1.9802 -3.2537 2.0085 39 1 1.2688 -4.9838 3.4049 40 1 2.1549 -4.9732 6.0868 41 1 3.1552 -6.1250 5.1697 42 1 -0.2192 -5.3652 6.4004 43 1 -2.0220 -7.0345 6.5423 44 1 -1.7369 -9.2484 5.5055 45 1 0.7772 -13.5146 3.0096 46 1 2.1782 -8.1240 4.2037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330435231.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:56 Heat of formation + Delta-G solvation = -112.000942 kcal Electronic energy + Delta-G solvation = -25860.671427 eV Core-core repulsion = 21943.013020 eV Total energy + Delta-G solvation = -3917.658408 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.18781 -40.67164 -39.39304 -38.48840 -36.13995 -35.63198 -34.28222 -33.53928 -32.21574 -30.82223 -29.86081 -28.07293 -27.51488 -26.60836 -23.63486 -23.24229 -22.43511 -22.22158 -21.96962 -19.90010 -19.26771 -18.70035 -17.99094 -17.40934 -16.84334 -16.71193 -16.35932 -16.16879 -16.06965 -15.89454 -15.56030 -15.27254 -15.22818 -14.97669 -14.43598 -14.25604 -13.96898 -13.85976 -13.68595 -13.45209 -13.39442 -13.13405 -13.01484 -12.95926 -12.52987 -12.39010 -12.35448 -12.26833 -12.14412 -12.11194 -11.59363 -11.43246 -11.19970 -10.80617 -10.52437 -10.39100 -9.78017 -9.74864 -9.02956 -8.46465 -6.14920 0.37548 0.71048 1.36145 1.44819 1.53505 1.82106 2.15517 2.17970 2.68028 2.82322 3.13543 3.37323 3.46185 3.83666 3.87509 4.08899 4.10469 4.15244 4.24943 4.31993 4.33113 4.43912 4.47703 4.53955 4.58032 4.66847 4.73842 4.77458 4.86429 4.93083 4.97643 4.99633 5.02704 5.12455 5.26597 5.32285 5.35458 5.42273 5.50711 5.62975 5.71226 5.72948 5.97795 6.02662 6.17526 6.31852 6.98299 7.06859 7.56722 7.78693 8.76579 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016097 B = 0.002029 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.055870 B =13799.097538 C =14268.478582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.074 3.926 3 C -0.173 4.173 4 O -0.401 6.401 5 C 0.055 3.945 6 C 0.141 3.859 7 N -0.731 5.731 8 C 0.701 3.299 9 O -0.637 6.637 10 N -0.730 5.730 11 C 0.194 3.806 12 C -0.058 4.058 13 C -0.168 4.168 14 C -0.070 4.070 15 C -0.233 4.233 16 C 0.112 3.888 17 O -0.232 6.232 18 C -0.412 4.412 19 H 0.104 0.896 20 C -0.024 4.024 21 N -0.921 5.921 22 Si 1.018 2.982 23 H -0.263 1.263 24 H -0.274 1.274 25 H -0.252 1.252 26 C -0.180 4.180 27 H 0.054 0.946 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.410 0.590 39 H 0.408 0.592 40 H 0.083 0.917 41 H 0.060 0.940 42 H 0.147 0.853 43 H 0.149 0.851 44 H 0.121 0.879 45 H 0.272 0.728 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.210 25.058 -6.288 25.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.017 3.983 3 C -0.231 4.231 4 O -0.321 6.321 5 C -0.021 4.021 6 C 0.017 3.983 7 N -0.387 5.387 8 C 0.400 3.600 9 O -0.519 6.519 10 N -0.386 5.386 11 C 0.070 3.930 12 C -0.058 4.058 13 C -0.187 4.187 14 C -0.088 4.088 15 C -0.253 4.253 16 C 0.061 3.939 17 O -0.139 6.139 18 C -0.488 4.488 19 H 0.121 0.879 20 C -0.222 4.222 21 N -0.559 5.559 22 Si 0.838 3.162 23 H -0.188 1.188 24 H -0.198 1.198 25 H -0.176 1.176 26 C -0.200 4.200 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.246 0.754 39 H 0.243 0.757 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.164 0.836 43 H 0.167 0.833 44 H 0.139 0.861 45 H 0.081 0.919 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.173 25.015 -5.679 25.652 hybrid contribution -0.757 -1.169 -0.694 1.556 sum -0.930 23.846 -6.373 24.701 Atomic orbital electron populations 1.21887 0.93393 1.02652 1.02859 1.22258 0.95299 0.92844 0.87866 1.22286 1.01647 0.96340 1.02814 1.87968 1.36850 1.70377 1.36924 1.22814 0.86788 0.96429 0.96097 1.21284 0.92282 0.87907 0.96854 1.44948 1.32724 1.36151 1.24872 1.16082 0.82177 0.79743 0.81950 1.90883 1.35033 1.73652 1.52341 1.45058 1.30853 1.35152 1.27503 1.19856 0.95550 0.90218 0.87403 1.19435 0.95786 0.92576 0.98031 1.20997 0.93133 1.00684 1.03854 1.21158 0.99550 0.91489 0.96558 1.21370 0.98138 0.99886 1.05884 1.19855 0.94714 0.86637 0.92652 1.83948 1.46083 1.18856 1.64975 1.21824 0.98050 0.90070 1.38872 0.87895 1.26591 1.00757 0.99002 0.95814 1.70185 1.28313 1.20191 1.37200 0.84587 0.76088 0.75895 0.79655 1.18757 1.19845 1.17582 1.20218 0.98393 0.93979 1.07361 0.92728 0.89702 0.92367 0.90920 0.90317 0.92777 0.92224 0.89790 0.91163 0.92239 0.90043 0.75440 0.75681 0.89896 0.92130 0.83557 0.83339 0.86114 0.91900 0.87437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.56 71.98 0.69 -0.91 16 2 C 0.07 0.82 3.34 30.59 0.10 0.92 16 3 C -0.17 -1.63 9.53 71.98 0.69 -0.94 16 4 O -0.40 -6.15 9.93 -148.98 -1.48 -7.63 16 5 C 0.06 0.66 5.88 71.98 0.42 1.08 16 6 C 0.14 2.48 6.06 86.38 0.52 3.00 16 7 N -0.73 -14.98 5.51 -478.53 -2.64 -17.61 16 8 C 0.70 19.61 8.57 179.05 1.53 21.14 16 9 O -0.64 -22.96 16.34 -3.99 -0.07 -23.03 16 10 N -0.73 -18.86 5.55 -482.30 -2.68 -21.54 16 11 C 0.19 5.57 5.80 85.63 0.50 6.07 16 12 C -0.06 -1.86 5.25 -19.88 -0.10 -1.97 16 13 C -0.17 -4.86 9.70 22.30 0.22 -4.65 16 14 C -0.07 -2.20 10.04 22.25 0.22 -1.98 16 15 C -0.23 -9.63 9.17 22.39 0.21 -9.42 16 16 C 0.11 5.38 6.65 22.58 0.15 5.53 16 17 O -0.23 -13.71 9.76 -22.74 -0.22 -13.93 16 18 C -0.41 -23.55 9.49 67.92 0.64 -22.90 16 19 H 0.10 5.35 5.21 -2.91 -0.02 5.33 16 20 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 21 N -0.92 -56.16 13.67 21.61 0.30 -55.87 16 22 Si 1.02 42.24 29.55 68.60 2.03 44.27 16 23 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.25 -9.67 7.11 99.48 0.71 -8.97 16 26 C -0.18 -7.42 9.65 22.39 0.22 -7.21 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.61 7.79 -2.39 -0.02 0.60 16 31 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.52 7.87 -2.39 -0.02 0.50 16 34 H 0.08 0.71 7.87 -2.39 -0.02 0.69 16 35 H 0.07 0.67 8.08 -2.39 -0.02 0.65 16 36 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.41 6.65 8.49 -92.70 -0.79 5.87 16 39 H 0.41 9.11 8.48 -92.71 -0.79 8.32 16 40 H 0.08 2.24 8.09 -2.39 -0.02 2.22 16 41 H 0.06 1.90 8.08 -2.39 -0.02 1.89 16 42 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 43 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 44 H 0.12 5.07 5.64 -2.91 -0.02 5.05 16 45 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 46 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -75.92 390.87 1.14 -74.78 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: -0.57 Total: 33.68 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 6.47 Total: -13.13 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -5.02 Total: -95.02 kcal Atomic # 8 Polarization: -42.82 SS G_CDS: -1.77 Total: -44.58 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -75.92 1.14 -74.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330435231.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.219 kcal (2) G-P(sol) polarization free energy of solvation -75.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds