Wall clock time and date at job start Tue Mar 31 2020 15:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50709 * 109.46745 * 2 1 4 4 O 1.21280 * 119.99776 * 0.02562 * 3 2 1 5 5 N 1.34772 * 119.99945 * 179.97438 * 3 2 1 6 6 C 1.46499 * 119.99997 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.47168 * 180.02562 * 6 5 3 8 8 H 1.09002 * 109.47074 * 59.99947 * 7 6 5 9 9 O 1.42907 * 109.46903 * 300.00200 * 7 6 5 10 10 C 1.52996 * 109.47320 * 180.02562 * 7 6 5 11 11 N 1.46896 * 109.47333 * 184.99838 * 10 7 6 12 12 C 1.46905 * 111.00155 * 179.97438 * 11 10 7 13 13 C 1.50698 * 109.47044 * 180.02562 * 12 11 10 14 14 C 1.38297 * 119.93202 * 90.00061 * 13 12 11 15 15 C 1.38101 * 120.07230 * 180.02562 * 14 13 12 16 16 C 1.38886 * 119.92536 * 359.97438 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47517 * 59.99414 * 22 20 18 24 24 H 1.48505 * 109.47332 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46989 * 299.99567 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38110 * 119.92772 * 359.48927 * 26 16 15 28 28 H 1.09003 * 109.46745 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47419 * 299.99554 * 1 2 3 30 30 H 1.09003 * 109.47110 * 60.00083 * 1 2 3 31 31 H 1.08996 * 109.47419 * 240.00446 * 2 1 3 32 32 H 1.08999 * 109.47193 * 119.99403 * 2 1 3 33 33 H 0.97003 * 119.99844 * 0.02562 * 5 3 2 34 34 H 1.08996 * 109.46742 * 60.00309 * 6 5 3 35 35 H 1.08994 * 109.47461 * 300.00069 * 6 5 3 36 36 H 0.96702 * 113.99920 * 299.99551 * 9 7 6 37 37 H 1.09008 * 109.47042 * 64.99795 * 10 7 6 38 38 H 1.09002 * 109.47027 * 304.99995 * 10 7 6 39 39 H 1.00900 * 111.00180 * 303.95828 * 11 10 7 40 40 H 1.09003 * 109.46647 * 59.99968 * 12 11 10 41 41 H 1.09004 * 109.46926 * 300.00194 * 12 11 10 42 42 H 1.07999 * 119.96698 * 0.02562 * 14 13 12 43 43 H 1.07992 * 120.03608 * 179.97438 * 15 14 13 44 44 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 46 46 H 1.07996 * 119.96227 * 180.23396 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6673 0.0005 6 6 3.8456 3.0485 0.0000 7 6 5.3756 3.0486 0.0001 8 1 5.7391 2.5344 -0.8897 9 8 5.8519 2.3754 1.1672 10 6 5.8856 4.4911 0.0001 11 7 7.3496 4.4929 -0.1204 12 6 7.8758 5.8645 -0.1244 13 6 9.3770 5.8262 -0.2498 14 6 9.9656 5.8431 -1.5011 15 6 11.3411 5.8075 -1.6194 16 6 12.1334 5.7553 -0.4800 17 8 13.4858 5.7207 -0.5929 18 6 14.0001 5.8554 -1.8320 19 1 13.3428 5.9016 -2.6875 20 6 15.3733 5.9346 -2.0077 21 7 16.1742 5.8788 -0.9655 22 14 16.0859 6.1219 -3.7242 23 1 15.5728 7.3721 -4.3396 24 1 17.5674 6.1834 -3.6412 25 1 15.6842 4.9595 -4.5565 26 6 11.5392 5.7331 0.7751 27 6 10.1633 5.7737 0.8868 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 3.9877 0.9300 0.0005 34 1 3.4818 3.5628 0.8895 35 1 3.4827 3.5618 -0.8904 36 1 5.5665 2.7793 1.9982 37 1 5.5971 4.9784 0.9315 38 1 5.4510 5.0301 -0.8417 39 1 7.7735 3.9447 0.6130 40 1 7.6010 6.3617 0.8059 41 1 7.4550 6.4126 -0.9674 42 1 9.3490 5.8842 -2.3868 43 1 11.8001 5.8204 -2.5969 44 1 17.1347 5.9338 -1.0885 45 1 12.1526 5.6879 1.6628 46 1 9.7008 5.7603 1.8626 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001420089081.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:02 Heat of formation + Delta-G solvation = -102.158832 kcal Electronic energy + Delta-G solvation = -25462.293131 eV Core-core repulsion = 21545.061509 eV Total energy + Delta-G solvation = -3917.231622 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.18426 -39.11884 -38.44714 -36.91481 -35.05934 -34.61540 -33.20664 -32.32798 -30.96137 -30.17131 -29.08789 -26.31588 -25.37862 -24.22822 -23.04392 -22.13300 -21.95811 -20.61202 -20.37341 -17.98695 -17.74002 -17.23264 -16.91316 -16.77592 -16.01896 -15.83870 -15.31983 -14.84152 -14.68098 -14.48115 -14.32608 -14.08449 -13.86761 -13.68601 -13.52278 -13.35647 -12.90696 -12.74102 -12.68115 -12.63623 -12.22472 -12.17097 -11.84139 -11.59479 -11.57079 -11.33190 -11.26744 -10.88758 -10.75979 -10.65097 -10.46566 -10.44569 -10.13130 -9.50169 -9.33849 -8.83874 -8.46100 -8.17341 -7.19402 -6.45462 -4.04314 2.21496 2.26949 2.27208 2.73679 3.13161 3.14008 3.16902 3.89489 3.96543 4.04083 4.31389 4.51352 4.57937 4.64453 4.67350 4.70949 4.81303 5.04282 5.09170 5.10309 5.23156 5.27626 5.31559 5.38572 5.40635 5.42345 5.50371 5.69150 5.73273 5.78980 5.81216 5.87348 5.99254 6.20730 6.42241 6.69104 6.88842 6.94060 7.07811 7.08452 7.18609 7.20865 7.37557 7.42367 7.45949 7.82434 7.84232 7.99561 9.00091 9.70026 10.72427 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.028174 B = 0.001647 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.591772 B =16991.689901 C =17311.771950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.145 4.145 3 C 0.509 3.491 4 O -0.544 6.544 5 N -0.725 5.725 6 C 0.088 3.912 7 C 0.097 3.903 8 H 0.116 0.884 9 O -0.555 6.555 10 C 0.030 3.970 11 N -0.680 5.680 12 C 0.119 3.881 13 C -0.187 4.187 14 C -0.048 4.048 15 C -0.236 4.236 16 C 0.156 3.844 17 O -0.178 6.178 18 C -0.392 4.392 19 H 0.092 0.908 20 C 0.040 3.960 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.194 4.194 27 C -0.068 4.068 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.407 0.593 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.374 0.626 37 H 0.032 0.968 38 H 0.082 0.918 39 H 0.349 0.651 40 H 0.027 0.973 41 H 0.070 0.930 42 H 0.107 0.893 43 H 0.126 0.874 44 H 0.270 0.730 45 H 0.116 0.884 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.280 -8.498 2.546 26.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.185 4.185 3 C 0.296 3.704 4 O -0.421 6.421 5 N -0.378 5.378 6 C -0.037 4.037 7 C 0.037 3.963 8 H 0.134 0.866 9 O -0.360 6.360 10 C -0.101 4.101 11 N -0.313 5.313 12 C -0.009 4.009 13 C -0.188 4.188 14 C -0.067 4.067 15 C -0.255 4.255 16 C 0.102 3.898 17 O -0.081 6.081 18 C -0.469 4.469 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.497 5.497 22 Si 0.766 3.234 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.213 4.213 27 C -0.086 4.086 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.242 0.758 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.221 0.779 37 H 0.050 0.950 38 H 0.100 0.900 39 H 0.168 0.832 40 H 0.046 0.954 41 H 0.088 0.912 42 H 0.125 0.875 43 H 0.144 0.856 44 H 0.080 0.920 45 H 0.134 0.866 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -25.132 -8.272 1.627 26.508 hybrid contribution 0.367 0.435 0.380 0.684 sum -24.765 -7.838 2.007 26.053 Atomic orbital electron populations 1.21531 0.92969 1.01656 1.03353 1.21637 0.98711 0.93610 1.04501 1.20861 0.81984 0.92013 0.75565 1.90711 1.55361 1.46669 1.49394 1.45927 1.07293 1.08878 1.75730 1.22029 0.94710 0.83789 1.03204 1.22265 0.90370 0.93596 0.90030 0.86615 1.86644 1.76825 1.56751 1.15796 1.22528 0.90667 0.95828 1.01045 1.60491 1.02944 1.13747 1.54100 1.20621 0.92177 0.88488 0.99630 1.19080 0.93282 1.13015 0.93470 1.20563 0.93809 0.96349 0.95989 1.21167 0.93662 1.11694 0.98972 1.19405 0.84911 0.92154 0.93316 1.83973 1.14408 1.77887 1.31824 1.21288 0.91082 1.52261 0.82239 0.89086 1.25289 0.95005 0.96521 0.99653 1.70027 1.04167 1.45866 1.29684 0.85782 0.78140 0.79214 0.80303 1.19505 1.20274 1.19485 1.20164 0.94144 1.11566 0.95436 1.20470 0.92704 0.98626 0.96847 0.92003 0.92014 0.91989 0.88818 0.88820 0.75835 0.91248 0.90404 0.77896 0.94978 0.89975 0.83177 0.95439 0.91191 0.87511 0.85591 0.91967 0.86610 0.87530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.20 37.16 0.34 -0.47 16 2 C -0.14 -0.74 6.42 -27.88 -0.18 -0.92 16 3 C 0.51 4.30 7.83 -10.98 -0.09 4.21 16 4 O -0.54 -6.85 15.98 5.56 0.09 -6.76 16 5 N -0.73 -4.87 5.45 -60.29 -0.33 -5.19 16 6 C 0.09 0.61 5.34 -4.04 -0.02 0.59 16 7 C 0.10 0.69 3.29 -26.73 -0.09 0.60 16 8 H 0.12 0.94 8.14 -51.93 -0.42 0.51 16 9 O -0.56 -4.13 12.60 -35.23 -0.44 -4.58 16 10 C 0.03 0.24 5.36 -3.83 -0.02 0.22 16 11 N -0.68 -7.77 6.49 -115.05 -0.75 -8.52 16 12 C 0.12 1.51 5.81 -4.97 -0.03 1.48 16 13 C -0.19 -3.11 5.40 -104.58 -0.56 -3.67 16 14 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16 15 C -0.24 -5.12 9.17 -39.39 -0.36 -5.48 16 16 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16 17 O -0.18 -5.08 9.76 0.05 0.00 -5.08 16 18 C -0.39 -10.97 9.49 30.89 0.29 -10.68 16 19 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 20 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 21 N -0.86 -25.25 13.67 55.48 0.76 -24.49 16 22 Si 0.94 20.47 29.55 -169.99 -5.02 15.44 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 26 C -0.19 -4.06 9.99 -39.39 -0.39 -4.46 16 27 C -0.07 -1.18 9.69 -39.60 -0.38 -1.56 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 30 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.41 2.06 8.35 -40.82 -0.34 1.72 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.37 1.76 9.05 45.56 0.41 2.17 16 37 H 0.03 0.24 8.14 -51.92 -0.42 -0.18 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.35 4.17 8.28 -39.29 -0.33 3.84 16 40 H 0.03 0.32 8.09 -51.93 -0.42 -0.10 16 41 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 42 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 43 H 0.13 2.75 5.64 -52.49 -0.30 2.45 16 44 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 46 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 390.15 15.07 5.88 5.88 Total: -1.00 -33.58 390.15 -8.34 -41.92 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -6.29 Total: 8.28 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -2.23 Total: -16.89 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: -0.32 Total: -38.20 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.35 Total: -16.43 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.58 -8.34 -41.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001420089081.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.244 kcal (2) G-P(sol) polarization free energy of solvation -33.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds