Wall clock time and date at job start Tue Mar 31 2020 15:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50709 * 109.46745 * 2 1 4 4 O 1.21280 * 119.99776 * 0.02562 * 3 2 1 5 5 N 1.34772 * 119.99945 * 179.97438 * 3 2 1 6 6 C 1.46499 * 119.99997 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.47168 * 180.02562 * 6 5 3 8 8 H 1.09002 * 109.47074 * 59.99947 * 7 6 5 9 9 O 1.42907 * 109.46903 * 300.00200 * 7 6 5 10 10 C 1.52996 * 109.47320 * 180.02562 * 7 6 5 11 11 N 1.46896 * 109.47333 * 184.99838 * 10 7 6 12 12 C 1.46905 * 111.00155 * 179.97438 * 11 10 7 13 13 C 1.50698 * 109.47044 * 180.02562 * 12 11 10 14 14 C 1.38297 * 119.93202 * 90.00061 * 13 12 11 15 15 C 1.38101 * 120.07230 * 180.02562 * 14 13 12 16 16 C 1.38886 * 119.92536 * 359.97438 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47517 * 59.99414 * 22 20 18 24 24 H 1.48505 * 109.47332 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46989 * 299.99567 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38110 * 119.92772 * 359.48927 * 26 16 15 28 28 H 1.09003 * 109.46745 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47419 * 299.99554 * 1 2 3 30 30 H 1.09003 * 109.47110 * 60.00083 * 1 2 3 31 31 H 1.08996 * 109.47419 * 240.00446 * 2 1 3 32 32 H 1.08999 * 109.47193 * 119.99403 * 2 1 3 33 33 H 0.97003 * 119.99844 * 0.02562 * 5 3 2 34 34 H 1.08996 * 109.46742 * 60.00309 * 6 5 3 35 35 H 1.08994 * 109.47461 * 300.00069 * 6 5 3 36 36 H 0.96702 * 113.99920 * 299.99551 * 9 7 6 37 37 H 1.09008 * 109.47042 * 64.99795 * 10 7 6 38 38 H 1.09002 * 109.47027 * 304.99995 * 10 7 6 39 39 H 1.00900 * 111.00180 * 303.95828 * 11 10 7 40 40 H 1.09003 * 109.46647 * 59.99968 * 12 11 10 41 41 H 1.09004 * 109.46926 * 300.00194 * 12 11 10 42 42 H 1.07999 * 119.96698 * 0.02562 * 14 13 12 43 43 H 1.07992 * 120.03608 * 179.97438 * 15 14 13 44 44 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 46 46 H 1.07996 * 119.96227 * 180.23396 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6673 0.0005 6 6 3.8456 3.0485 0.0000 7 6 5.3756 3.0486 0.0001 8 1 5.7391 2.5344 -0.8897 9 8 5.8519 2.3754 1.1672 10 6 5.8856 4.4911 0.0001 11 7 7.3496 4.4929 -0.1204 12 6 7.8758 5.8645 -0.1244 13 6 9.3770 5.8262 -0.2498 14 6 9.9656 5.8431 -1.5011 15 6 11.3411 5.8075 -1.6194 16 6 12.1334 5.7553 -0.4800 17 8 13.4858 5.7207 -0.5929 18 6 14.0001 5.8554 -1.8320 19 1 13.3428 5.9016 -2.6875 20 6 15.3733 5.9346 -2.0077 21 7 16.1742 5.8788 -0.9655 22 14 16.0859 6.1219 -3.7242 23 1 15.5728 7.3721 -4.3396 24 1 17.5674 6.1834 -3.6412 25 1 15.6842 4.9595 -4.5565 26 6 11.5392 5.7331 0.7751 27 6 10.1633 5.7737 0.8868 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 3.9877 0.9300 0.0005 34 1 3.4818 3.5628 0.8895 35 1 3.4827 3.5618 -0.8904 36 1 5.5665 2.7793 1.9982 37 1 5.5971 4.9784 0.9315 38 1 5.4510 5.0301 -0.8417 39 1 7.7735 3.9447 0.6130 40 1 7.6010 6.3617 0.8059 41 1 7.4550 6.4126 -0.9674 42 1 9.3490 5.8842 -2.3868 43 1 11.8001 5.8204 -2.5969 44 1 17.1347 5.9338 -1.0885 45 1 12.1526 5.6879 1.6628 46 1 9.7008 5.7603 1.8626 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001420089081.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:01 Heat of formation + Delta-G solvation = -129.496347 kcal Electronic energy + Delta-G solvation = -25463.478575 eV Core-core repulsion = 21545.061509 eV Total energy + Delta-G solvation = -3918.417066 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.85014 -40.75484 -39.22323 -38.41841 -36.08607 -35.26433 -34.27456 -33.69181 -32.00179 -31.74871 -30.16080 -27.66339 -26.79197 -25.13277 -23.86008 -23.59531 -22.72993 -21.93135 -21.15600 -19.82483 -18.82210 -18.30098 -17.88661 -17.39206 -16.80977 -16.51138 -16.37275 -16.22697 -16.00144 -15.79495 -15.47093 -15.38626 -14.90573 -14.70024 -14.66704 -14.40870 -14.29504 -14.04949 -13.57295 -13.50130 -13.16638 -13.12409 -12.90851 -12.71266 -12.63725 -12.40352 -12.30886 -12.14884 -12.05679 -12.02672 -11.93831 -11.20891 -11.16459 -10.83020 -10.76163 -10.12000 -9.75911 -9.33240 -8.88824 -8.46360 -6.14604 0.62119 0.69183 1.35379 1.45984 1.51583 1.65005 2.18169 2.18653 2.79600 3.10524 3.36190 3.49178 3.53817 3.81460 3.94524 4.01365 4.04996 4.10753 4.15599 4.22883 4.26435 4.27896 4.45073 4.53817 4.62202 4.65438 4.73463 4.75938 4.81619 4.85882 5.00333 5.06327 5.10929 5.11607 5.17107 5.30995 5.32157 5.44425 5.58149 5.73500 5.83138 6.03742 6.08598 6.26384 6.48945 6.54759 6.77810 6.98289 7.26202 7.79279 8.76606 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.028174 B = 0.001647 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.591772 B =16991.689901 C =17311.771950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.503 3.497 4 O -0.593 6.593 5 N -0.716 5.716 6 C 0.092 3.908 7 C 0.113 3.887 8 H 0.107 0.893 9 O -0.566 6.566 10 C 0.032 3.968 11 N -0.691 5.691 12 C 0.123 3.877 13 C -0.159 4.159 14 C -0.050 4.050 15 C -0.245 4.245 16 C 0.113 3.887 17 O -0.234 6.234 18 C -0.415 4.415 19 H 0.101 0.899 20 C -0.022 4.022 21 N -0.920 5.920 22 Si 1.018 2.982 23 H -0.258 1.258 24 H -0.271 1.271 25 H -0.258 1.258 26 C -0.206 4.206 27 C -0.059 4.059 28 H 0.083 0.917 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.416 0.584 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.387 0.613 37 H 0.048 0.952 38 H 0.087 0.913 39 H 0.347 0.653 40 H 0.048 0.952 41 H 0.082 0.918 42 H 0.136 0.864 43 H 0.116 0.884 44 H 0.272 0.728 45 H 0.112 0.888 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.080 -9.153 2.098 29.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.179 4.179 3 C 0.291 3.709 4 O -0.474 6.474 5 N -0.369 5.369 6 C -0.033 4.033 7 C 0.053 3.947 8 H 0.125 0.875 9 O -0.373 6.373 10 C -0.098 4.098 11 N -0.323 5.323 12 C -0.006 4.006 13 C -0.160 4.160 14 C -0.069 4.069 15 C -0.265 4.265 16 C 0.062 3.938 17 O -0.141 6.141 18 C -0.491 4.491 19 H 0.118 0.882 20 C -0.220 4.220 21 N -0.559 5.559 22 Si 0.837 3.163 23 H -0.182 1.182 24 H -0.196 1.196 25 H -0.182 1.182 26 C -0.225 4.225 27 C -0.077 4.077 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.253 0.747 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.236 0.764 37 H 0.066 0.934 38 H 0.105 0.895 39 H 0.166 0.834 40 H 0.066 0.934 41 H 0.100 0.900 42 H 0.154 0.846 43 H 0.134 0.866 44 H 0.081 0.919 45 H 0.130 0.870 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -27.981 -8.948 1.195 29.401 hybrid contribution 0.850 0.612 0.670 1.243 sum -27.130 -8.336 1.865 28.443 Atomic orbital electron populations 1.21538 0.93756 1.02528 1.01778 1.21693 0.97973 0.91665 1.06556 1.21489 0.81985 0.92912 0.74508 1.90690 1.56544 1.48318 1.51813 1.45893 1.07111 1.09183 1.74673 1.21943 0.94586 0.83947 1.02812 1.22021 0.90001 0.92881 0.89800 0.87472 1.86623 1.76986 1.57156 1.16509 1.22564 0.88507 0.96630 1.02077 1.60395 1.04867 1.12666 1.54391 1.20610 0.88843 0.89764 1.01339 1.19641 0.95890 1.08163 0.92337 1.20912 0.92448 0.95420 0.98108 1.21264 0.95214 1.12110 0.97871 1.19971 0.84081 0.94295 0.95417 1.83935 1.16743 1.81115 1.32263 1.21779 0.91926 1.52645 0.82757 0.88199 1.26580 0.95033 0.95903 1.04450 1.70176 1.04470 1.48736 1.32480 0.84658 0.77312 0.79841 0.74468 1.18206 1.19573 1.18188 1.20445 0.95971 1.11773 0.94318 1.20896 0.91032 0.96624 0.99195 0.89829 0.93580 0.93632 0.86649 0.86597 0.74657 0.91393 0.91120 0.76416 0.93433 0.89459 0.83428 0.93400 0.89959 0.84640 0.86587 0.91857 0.87000 0.83535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.20 71.98 0.66 -0.80 16 2 C -0.14 -1.12 6.42 29.85 0.19 -0.92 16 3 C 0.50 7.77 7.83 87.66 0.69 8.45 16 4 O -0.59 -14.74 15.98 -3.03 -0.05 -14.79 16 5 N -0.72 -8.12 5.45 -463.06 -2.52 -10.64 16 6 C 0.09 1.09 5.34 86.38 0.46 1.55 16 7 C 0.11 1.27 3.29 30.59 0.10 1.37 16 8 H 0.11 1.44 8.14 -2.39 -0.02 1.43 16 9 O -0.57 -6.68 12.60 -148.98 -1.88 -8.55 16 10 C 0.03 0.40 5.36 86.30 0.46 0.86 16 11 N -0.69 -12.95 6.49 -517.92 -3.36 -16.31 16 12 C 0.12 2.54 5.81 85.56 0.50 3.04 16 13 C -0.16 -4.74 5.40 -19.84 -0.11 -4.85 16 14 C -0.05 -1.73 9.69 22.25 0.22 -1.52 16 15 C -0.25 -10.78 9.17 22.39 0.21 -10.58 16 16 C 0.11 5.66 6.65 22.58 0.15 5.81 16 17 O -0.23 -14.26 9.76 -22.72 -0.22 -14.48 16 18 C -0.41 -24.43 9.49 67.92 0.64 -23.79 16 19 H 0.10 5.40 5.20 -2.91 -0.02 5.39 16 20 C -0.02 -1.27 5.49 84.84 0.47 -0.80 16 21 N -0.92 -56.81 13.67 21.62 0.30 -56.51 16 22 Si 1.02 43.06 29.55 68.60 2.03 45.08 16 23 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 25 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 26 C -0.21 -8.70 9.99 22.39 0.22 -8.48 16 27 C -0.06 -1.90 9.69 22.25 0.22 -1.68 16 28 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.04 0.62 8.10 -2.39 -0.02 0.60 16 30 H 0.04 0.62 8.10 -2.39 -0.02 0.60 16 31 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.42 3.12 8.35 -92.71 -0.77 2.35 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.39 2.37 9.05 -74.06 -0.67 1.70 16 37 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 38 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.35 6.89 8.28 -89.69 -0.74 6.15 16 40 H 0.05 0.85 8.09 -2.39 -0.02 0.83 16 41 H 0.08 1.59 8.08 -2.39 -0.02 1.57 16 42 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 43 H 0.12 5.22 5.64 -2.91 -0.02 5.20 16 44 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 45 H 0.11 4.70 8.06 -2.91 -0.02 4.67 16 46 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -78.92 390.15 -1.80 -80.72 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: -1.17 Total: 27.81 kcal Atomic # 6 Polarization: -37.41 SS G_CDS: 5.08 Total: -32.33 kcal Atomic # 7 Polarization: -77.88 SS G_CDS: -5.59 Total: -83.46 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -2.15 Total: -37.82 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -78.92 -1.80 -80.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001420089081.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.775 kcal (2) G-P(sol) polarization free energy of solvation -78.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds