Wall clock time and date at job start Tue Mar 31 2020 15:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47271 * 2 1 4 4 O 1.21275 * 119.99857 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99945 * 180.02562 * 3 2 1 6 6 C 1.46494 * 120.00133 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47459 * 179.97438 * 6 5 3 8 8 H 1.09002 * 109.46881 * 305.00041 * 7 6 5 9 9 O 1.42900 * 109.47085 * 64.99562 * 7 6 5 10 10 C 1.52996 * 109.47481 * 185.00084 * 7 6 5 11 11 N 1.46896 * 109.47333 * 179.97438 * 10 7 6 12 12 C 1.46905 * 111.00155 * 179.97438 * 11 10 7 13 13 C 1.50698 * 109.47044 * 180.02562 * 12 11 10 14 14 C 1.38297 * 119.93202 * 90.00061 * 13 12 11 15 15 C 1.38101 * 120.07230 * 180.02562 * 14 13 12 16 16 C 1.38886 * 119.92536 * 359.97438 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47517 * 59.99414 * 22 20 18 24 24 H 1.48505 * 109.47332 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46989 * 299.99567 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38110 * 119.92772 * 359.48927 * 26 16 15 28 28 H 1.09000 * 109.47429 * 300.00316 * 1 2 3 29 29 H 1.09006 * 109.47049 * 60.00116 * 1 2 3 30 30 H 1.09000 * 109.47345 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47060 * 239.99518 * 2 1 3 32 32 H 1.08996 * 109.46957 * 120.00042 * 2 1 3 33 33 H 0.97003 * 119.99391 * 359.97438 * 5 3 2 34 34 H 1.09000 * 109.46951 * 59.99410 * 6 5 3 35 35 H 1.09006 * 109.47002 * 299.99931 * 6 5 3 36 36 H 0.96700 * 113.99545 * 60.00697 * 9 7 6 37 37 H 1.09008 * 109.47042 * 59.99668 * 10 7 6 38 38 H 1.09002 * 109.47027 * 299.99867 * 10 7 6 39 39 H 1.00900 * 111.00180 * 303.95828 * 11 10 7 40 40 H 1.09003 * 109.46647 * 59.99968 * 12 11 10 41 41 H 1.09004 * 109.46926 * 300.00194 * 12 11 10 42 42 H 1.07999 * 119.96698 * 0.02562 * 14 13 12 43 43 H 1.07992 * 120.03608 * 179.97438 * 15 14 13 44 44 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 46 46 H 1.07996 * 119.96227 * 180.23396 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6670 -0.0005 6 6 3.8459 3.0482 -0.0011 7 6 5.3759 3.0482 -0.0010 8 1 5.7391 2.4591 0.8412 9 8 5.8523 2.4781 -1.2217 10 6 5.8859 4.4851 0.1242 11 7 7.3549 4.4851 0.1249 12 6 7.8814 5.8514 0.2433 13 6 9.3879 5.8112 0.2400 14 6 10.0778 5.8963 -0.9556 15 6 11.4583 5.8592 -0.9621 16 6 12.1537 5.7370 0.2339 17 8 13.5107 5.7008 0.2308 18 6 14.1258 5.9031 -0.9518 19 1 13.5414 6.0023 -1.8545 20 6 15.5089 5.9839 -1.0090 21 7 16.2209 5.8637 0.0907 22 14 16.3611 6.2650 -2.6473 23 1 15.9021 7.5515 -3.2298 24 1 17.8307 6.3127 -2.4392 25 1 16.0279 5.1546 -3.5754 26 6 11.4579 5.6465 1.4323 27 6 10.0775 5.6889 1.4325 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.9877 0.9296 -0.0005 34 1 3.4828 3.5623 0.8888 35 1 3.4822 3.5618 -0.8912 36 1 5.5671 2.9523 -2.0147 37 1 5.5225 4.9199 1.0554 38 1 5.5227 5.0742 -0.7179 39 1 7.7161 3.8932 0.8579 40 1 7.5314 6.2961 1.1749 41 1 7.5323 6.4495 -0.5985 42 1 9.5364 5.9918 -1.8852 43 1 11.9964 5.9253 -1.8960 44 1 17.1884 5.9198 0.0506 45 1 11.9958 5.5468 2.3635 46 1 9.5360 5.6224 2.3645 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001420089113.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:04 Heat of formation + Delta-G solvation = -127.858344 kcal Electronic energy + Delta-G solvation = -25465.909193 eV Core-core repulsion = 21547.563157 eV Total energy + Delta-G solvation = -3918.346036 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.83971 -40.75206 -39.15208 -38.39673 -36.09799 -35.25273 -34.27407 -33.68908 -31.98840 -31.74037 -30.11930 -27.66052 -26.78773 -25.11735 -23.86816 -23.59291 -22.76936 -21.91762 -21.15265 -19.82244 -18.81894 -18.28918 -17.87449 -17.35105 -16.72975 -16.47437 -16.32705 -16.22755 -16.00658 -15.72613 -15.51061 -15.41709 -14.97018 -14.67616 -14.63353 -14.42978 -14.27724 -14.07873 -13.56664 -13.38876 -13.21057 -13.12670 -12.91069 -12.70084 -12.63785 -12.39805 -12.30714 -12.14351 -12.04473 -12.02652 -11.91660 -11.16747 -11.14571 -10.80575 -10.73837 -10.12113 -9.75479 -9.28855 -8.87943 -8.46261 -6.14463 0.62463 0.69660 1.35477 1.46094 1.51660 1.64956 2.18589 2.18843 2.79725 3.10313 3.35664 3.53755 3.58390 3.81810 3.87731 4.03841 4.08051 4.11365 4.15948 4.22909 4.26332 4.27738 4.46413 4.54505 4.62636 4.65171 4.73266 4.76147 4.80550 4.85906 5.00273 5.06070 5.09403 5.11317 5.17257 5.31089 5.32516 5.44672 5.58395 5.73841 5.83621 6.03931 6.09109 6.26843 6.46942 6.54540 6.87783 6.98433 7.26132 7.79446 8.76714 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.029844 B = 0.001648 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.000023 B =16989.219127 C =17327.735292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.503 3.497 4 O -0.593 6.593 5 N -0.717 5.717 6 C 0.092 3.908 7 C 0.113 3.887 8 H 0.106 0.894 9 O -0.560 6.560 10 C 0.031 3.969 11 N -0.685 5.685 12 C 0.123 3.877 13 C -0.158 4.158 14 C -0.049 4.049 15 C -0.245 4.245 16 C 0.112 3.888 17 O -0.234 6.234 18 C -0.415 4.415 19 H 0.101 0.899 20 C -0.022 4.022 21 N -0.921 5.921 22 Si 1.018 2.982 23 H -0.258 1.258 24 H -0.271 1.271 25 H -0.258 1.258 26 C -0.206 4.206 27 C -0.060 4.060 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.416 0.584 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.385 0.615 37 H 0.050 0.950 38 H 0.083 0.917 39 H 0.343 0.657 40 H 0.047 0.953 41 H 0.081 0.919 42 H 0.135 0.865 43 H 0.116 0.884 44 H 0.272 0.728 45 H 0.112 0.888 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.141 -9.081 -0.979 29.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.179 4.179 3 C 0.291 3.709 4 O -0.474 6.474 5 N -0.369 5.369 6 C -0.033 4.033 7 C 0.053 3.947 8 H 0.124 0.876 9 O -0.366 6.366 10 C -0.099 4.099 11 N -0.317 5.317 12 C -0.005 4.005 13 C -0.159 4.159 14 C -0.068 4.068 15 C -0.265 4.265 16 C 0.062 3.938 17 O -0.141 6.141 18 C -0.491 4.491 19 H 0.118 0.882 20 C -0.220 4.220 21 N -0.559 5.559 22 Si 0.837 3.163 23 H -0.182 1.182 24 H -0.196 1.196 25 H -0.182 1.182 26 C -0.225 4.225 27 C -0.078 4.078 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.253 0.747 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.234 0.766 37 H 0.069 0.931 38 H 0.102 0.898 39 H 0.161 0.839 40 H 0.065 0.935 41 H 0.100 0.900 42 H 0.153 0.847 43 H 0.134 0.866 44 H 0.081 0.919 45 H 0.130 0.870 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -28.005 -8.886 -1.012 29.399 hybrid contribution 0.818 0.623 0.100 1.033 sum -27.187 -8.263 -0.912 28.429 Atomic orbital electron populations 1.21538 0.93767 1.02527 1.01773 1.21691 0.97970 0.91669 1.06564 1.21488 0.81998 0.92910 0.74501 1.90688 1.56557 1.48319 1.51803 1.45908 1.07116 1.09178 1.74687 1.21970 0.94700 0.83910 1.02750 1.21984 0.89888 0.94041 0.88782 0.87604 1.86600 1.77258 1.56852 1.15894 1.22587 0.88151 0.96942 1.02216 1.60362 1.06744 1.10340 1.54212 1.20608 0.88663 0.90079 1.01165 1.19637 0.95945 1.08005 0.92352 1.20903 0.91843 0.95433 0.98610 1.21263 0.95894 1.12024 0.97282 1.19972 0.84080 0.94340 0.95392 1.83934 1.15170 1.80232 1.34740 1.21776 0.90752 1.51736 0.84823 0.88217 1.26579 0.95805 0.96034 1.03550 1.70176 1.07061 1.48606 1.30034 0.84659 0.76969 0.79765 0.74896 1.18202 1.19568 1.18192 1.20444 0.95127 1.11736 0.95220 1.20901 0.91547 0.96666 0.98696 0.93585 0.93641 0.89827 0.86675 0.86552 0.74687 0.91064 0.91538 0.76608 0.93149 0.89842 0.83914 0.93453 0.90026 0.84706 0.86635 0.91861 0.87011 0.83489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.20 71.98 0.66 -0.80 16 2 C -0.14 -1.11 6.42 29.85 0.19 -0.91 16 3 C 0.50 7.74 7.83 87.66 0.69 8.43 16 4 O -0.59 -14.73 15.98 -3.01 -0.05 -14.78 16 5 N -0.72 -8.04 5.50 -463.07 -2.55 -10.59 16 6 C 0.09 1.08 5.31 86.38 0.46 1.54 16 7 C 0.11 1.25 3.21 30.59 0.10 1.35 16 8 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 9 O -0.56 -8.04 13.15 -148.98 -1.96 -9.99 16 10 C 0.03 0.38 5.35 86.30 0.46 0.84 16 11 N -0.69 -12.60 6.36 -517.92 -3.29 -15.89 16 12 C 0.12 2.52 5.81 85.56 0.50 3.02 16 13 C -0.16 -4.69 5.40 -19.84 -0.11 -4.80 16 14 C -0.05 -1.70 9.69 22.25 0.22 -1.48 16 15 C -0.25 -10.79 9.17 22.39 0.21 -10.59 16 16 C 0.11 5.65 6.65 22.58 0.15 5.80 16 17 O -0.23 -14.27 9.76 -22.72 -0.22 -14.49 16 18 C -0.41 -24.44 9.49 67.92 0.64 -23.79 16 19 H 0.10 5.40 5.20 -2.91 -0.02 5.39 16 20 C -0.02 -1.27 5.49 84.84 0.47 -0.81 16 21 N -0.92 -56.84 13.67 21.62 0.30 -56.55 16 22 Si 1.02 43.10 29.55 68.60 2.03 45.13 16 23 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 24 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 25 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 26 C -0.21 -8.69 9.99 22.39 0.22 -8.47 16 27 C -0.06 -1.91 9.69 22.25 0.22 -1.69 16 28 H 0.04 0.62 8.10 -2.39 -0.02 0.60 16 29 H 0.04 0.62 8.10 -2.38 -0.02 0.60 16 30 H 0.08 0.49 8.14 -2.39 -0.02 0.48 16 31 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.42 3.00 8.47 -92.71 -0.79 2.21 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.39 3.83 9.05 -74.06 -0.67 3.16 16 37 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.34 6.47 8.72 -89.69 -0.78 5.69 16 40 H 0.05 0.84 8.09 -2.39 -0.02 0.82 16 41 H 0.08 1.57 8.08 -2.39 -0.02 1.55 16 42 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 43 H 0.12 5.21 5.64 -2.91 -0.02 5.19 16 44 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 45 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 46 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -79.48 391.06 -1.90 -81.38 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: -1.22 Total: 28.16 kcal Atomic # 6 Polarization: -37.44 SS G_CDS: 5.07 Total: -32.37 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -5.54 Total: -83.03 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -2.23 Total: -39.27 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -79.48 -1.90 -81.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001420089113.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.479 kcal (2) G-P(sol) polarization free energy of solvation -79.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds