Wall clock time and date at job start Tue Mar 31 2020 16:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46835 * 2 1 4 4 C 1.50703 * 109.47003 * 240.00245 * 2 1 3 5 5 C 1.35166 * 125.61214 * 99.71323 * 4 2 1 6 6 C 1.40304 * 107.12853 * 179.90491 * 5 4 2 7 7 C 1.36638 * 106.70239 * 0.35699 * 6 5 4 8 8 C 1.46475 * 126.00017 * 179.80303 * 7 6 5 9 9 O 1.21621 * 119.99383 * 359.97438 * 8 7 6 10 10 O 1.34888 * 120.00333 * 179.97438 * 8 7 6 11 11 O 1.33911 * 125.60613 * 280.02587 * 4 2 1 12 12 N 1.46894 * 109.47262 * 119.99933 * 2 1 3 13 13 C 1.46900 * 110.99899 * 170.69648 * 12 2 1 14 14 C 1.53245 * 109.33759 * 187.25390 * 13 12 2 15 15 H 1.08994 * 109.62829 * 65.88502 * 14 13 12 16 16 C 1.52999 * 109.62488 * 186.46318 * 14 13 12 17 17 N 1.47077 * 108.52248 * 306.16820 * 14 13 12 18 18 C 1.36936 * 120.88202 * 231.16194 * 17 14 13 19 19 H 1.08003 * 119.99425 * 128.59715 * 18 17 14 20 20 C 1.38809 * 120.00338 * 308.58934 * 18 17 14 21 21 N 1.31620 * 119.99868 * 338.04845 * 20 18 17 22 22 Si 1.86794 * 119.99948 * 158.04256 * 20 18 17 23 23 H 1.48501 * 109.47223 * 90.00382 * 22 20 18 24 24 H 1.48497 * 109.47313 * 210.00447 * 22 20 18 25 25 H 1.48503 * 109.47443 * 330.00429 * 22 20 18 26 26 C 1.47080 * 118.23363 * 51.18852 * 17 14 13 27 27 H 1.09000 * 109.63103 * 68.52095 * 26 17 14 28 28 C 1.53005 * 109.62964 * 189.10197 * 26 17 14 29 29 C 1.46901 * 111.00247 * 294.99926 * 12 2 1 30 30 H 1.09007 * 109.47112 * 299.99926 * 1 2 3 31 31 H 1.09002 * 109.47511 * 59.99607 * 1 2 3 32 32 H 1.09003 * 109.47232 * 180.02562 * 1 2 3 33 33 H 1.08004 * 126.43317 * 0.03245 * 5 4 2 34 34 H 1.08002 * 126.65182 * 180.11134 * 6 5 4 35 35 H 0.96700 * 116.99838 * 179.97438 * 10 8 7 36 36 H 1.08995 * 109.49372 * 307.21418 * 13 12 2 37 37 H 1.08997 * 109.49340 * 67.29522 * 13 12 2 38 38 H 1.08997 * 109.47640 * 68.08737 * 16 14 13 39 39 H 1.09007 * 109.47127 * 188.08462 * 16 14 13 40 40 H 1.08997 * 109.47373 * 308.08277 * 16 14 13 41 41 H 0.97000 * 119.99667 * 175.07502 * 21 20 18 42 42 H 1.08996 * 109.47419 * 179.03008 * 28 26 17 43 43 H 1.08998 * 109.46699 * 299.03230 * 28 26 17 44 44 H 1.09000 * 109.46716 * 59.02671 * 28 26 17 45 45 H 1.08998 * 109.48875 * 52.78752 * 29 12 2 46 46 H 1.08996 * 109.51473 * 292.72125 * 29 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.4694 -0.1124 -2.3612 6 6 2.8443 -1.1319 -3.2493 7 6 2.6065 -2.3162 -2.6107 8 6 2.8453 -3.6532 -3.1592 9 8 3.2953 -3.7782 -4.2821 10 8 2.5661 -4.7457 -2.4189 11 8 2.1134 -2.0380 -1.3858 12 7 2.0196 -0.6924 1.1994 13 6 3.4711 -0.9070 1.1276 14 6 3.9128 -1.7860 2.3027 15 1 3.4825 -2.7818 2.1971 16 6 5.4396 -1.8815 2.3274 17 7 3.4360 -1.1714 3.5509 18 6 4.2915 -0.9505 4.5971 19 1 4.3457 0.0270 5.0532 20 6 5.0889 -1.9829 5.0716 21 7 4.7482 -3.2342 4.8467 22 14 6.6455 -1.5964 6.0291 23 1 6.3273 -1.5096 7.4770 24 1 7.6443 -2.6722 5.8054 25 1 7.2024 -0.2999 5.5661 26 6 2.0158 -0.8010 3.6459 27 1 1.4031 -1.7021 3.6694 28 6 1.7820 0.0176 4.9172 29 6 1.6487 0.0392 2.4180 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 2.5223 0.9504 -2.5454 34 1 3.2400 -1.0051 -4.2462 35 1 2.7400 -5.6065 -2.8238 36 1 3.7196 -1.4026 0.1892 37 1 3.9838 0.0535 1.1790 38 1 5.8605 -0.9094 2.5844 39 1 5.7457 -2.6178 3.0707 40 1 5.8007 -2.1854 1.3449 41 1 5.3406 -3.9539 5.1152 42 1 0.7324 0.3053 4.9763 43 1 2.0439 -0.5823 5.7888 44 1 2.4033 0.9128 4.8923 45 1 0.5756 0.2298 2.4153 46 1 2.1864 0.9867 2.4517 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604460675.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:59 Heat of formation + Delta-G solvation = -35.386866 kcal Electronic energy + Delta-G solvation = -28903.477242 eV Core-core repulsion = 24989.141070 eV Total energy + Delta-G solvation = -3914.336172 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.86951 -40.02853 -38.68380 -36.30224 -35.70407 -33.26535 -32.87136 -32.10642 -30.59017 -29.24323 -27.52300 -26.25492 -25.00543 -24.59922 -23.05079 -21.84991 -21.25946 -20.21277 -20.01431 -19.12625 -18.52767 -17.66035 -16.73709 -16.29077 -15.84974 -15.43516 -15.15803 -14.80886 -14.34482 -14.20975 -13.96320 -13.77752 -13.39027 -13.25206 -13.03461 -12.99274 -12.86756 -12.19527 -12.01334 -11.82563 -11.75842 -11.68848 -11.41080 -11.32053 -11.12209 -10.95787 -10.76886 -10.63911 -10.47306 -10.40787 -10.17146 -10.12370 -9.82479 -9.75771 -9.45178 -8.70346 -8.10916 -7.92610 -6.38646 -5.69594 -3.48844 0.74208 2.12993 2.34164 2.78420 3.12835 3.32683 3.42010 3.44865 4.05983 4.46207 4.48607 4.73143 5.03789 5.10592 5.15812 5.23694 5.32134 5.41237 5.53270 5.59008 5.67749 5.79793 5.80600 5.90789 6.02087 6.10631 6.15088 6.15566 6.20511 6.25362 6.34843 6.42538 6.46502 6.58791 6.69828 6.83054 6.84697 6.95579 7.14750 7.19953 7.44500 7.51073 7.63225 7.68410 7.72729 7.88192 8.61898 9.22486 9.77576 10.55568 11.19731 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.014279 B = 0.004172 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.398177 B = 6709.811298 C = 7909.263981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.148 3.852 3 H 0.071 0.929 4 C 0.070 3.930 5 C -0.235 4.235 6 C -0.099 4.099 7 C -0.082 4.082 8 C 0.575 3.425 9 O -0.504 6.504 10 O -0.499 6.499 11 O -0.125 6.125 12 N -0.525 5.525 13 C 0.043 3.957 14 C 0.202 3.798 15 H 0.037 0.963 16 C -0.142 4.142 17 N -0.578 5.578 18 C -0.263 4.263 19 H 0.052 0.948 20 C 0.037 3.963 21 N -0.870 5.870 22 Si 0.877 3.123 23 H -0.284 1.284 24 H -0.288 1.288 25 H -0.276 1.276 26 C 0.172 3.828 27 H 0.033 0.967 28 C -0.129 4.129 29 C 0.047 3.953 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.417 0.583 36 H 0.057 0.943 37 H 0.028 0.972 38 H 0.048 0.952 39 H 0.086 0.914 40 H 0.020 0.980 41 H 0.253 0.747 42 H 0.035 0.965 43 H 0.065 0.935 44 H 0.048 0.952 45 H 0.066 0.934 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.097 4.845 -13.216 15.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.039 3.961 3 H 0.089 0.911 4 C 0.015 3.985 5 C -0.254 4.254 6 C -0.118 4.118 7 C -0.132 4.132 8 C 0.420 3.580 9 O -0.395 6.395 10 O -0.310 6.310 11 O -0.019 6.019 12 N -0.250 5.250 13 C -0.086 4.086 14 C 0.096 3.904 15 H 0.055 0.945 16 C -0.200 4.200 17 N -0.303 5.303 18 C -0.392 4.392 19 H 0.069 0.931 20 C -0.166 4.166 21 N -0.510 5.510 22 Si 0.705 3.295 23 H -0.210 1.210 24 H -0.214 1.214 25 H -0.201 1.201 26 C 0.066 3.934 27 H 0.051 0.949 28 C -0.187 4.187 29 C -0.082 4.082 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.176 0.824 34 H 0.180 0.820 35 H 0.276 0.724 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.039 0.961 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.085 0.915 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -7.324 4.304 -12.975 15.508 hybrid contribution 1.539 0.387 -0.091 1.590 sum -5.784 4.691 -13.066 15.040 Atomic orbital electron populations 1.21890 0.92476 1.03559 1.02161 1.20428 0.96307 0.93939 0.85437 0.91134 1.22968 0.97985 0.80331 0.97223 1.21561 1.08941 1.00999 0.93903 1.21894 0.99249 0.89772 1.00933 1.20603 1.13031 0.92538 0.87024 1.18864 0.73852 0.83068 0.82183 1.90980 1.42938 1.86453 1.19110 1.84734 1.79504 1.17703 1.49024 1.84270 1.62730 1.24458 1.30396 1.62066 1.15153 1.47527 1.00255 1.22914 0.85547 0.99551 1.00549 1.20240 0.93108 0.93532 0.83551 0.94531 1.21980 0.95693 1.02999 0.99350 1.44060 1.02496 1.72376 1.11353 1.18634 1.17580 0.93009 1.09997 0.93069 1.25438 1.00022 0.95135 0.95983 1.70214 1.34573 0.98052 1.48157 0.86768 0.84415 0.77963 0.80371 1.21039 1.21373 1.20106 1.20535 0.88007 0.94391 0.90504 0.94902 1.21691 0.98080 1.00065 0.98899 1.22804 0.99036 0.95685 0.90701 0.91011 0.92072 0.91110 0.82368 0.81997 0.72377 0.92437 0.95401 0.93250 0.89514 0.96055 0.93649 0.94597 0.91558 0.93272 0.91534 0.95210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.09 37.16 0.34 -1.26 16 2 C 0.15 1.99 2.54 -68.87 -0.18 1.82 16 3 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 4 C 0.07 0.96 4.47 -35.40 -0.16 0.81 16 5 C -0.23 -2.75 10.76 -39.90 -0.43 -3.18 16 6 C -0.10 -1.20 10.62 -39.38 -0.42 -1.62 16 7 C -0.08 -1.16 7.18 -36.84 -0.26 -1.43 16 8 C 0.58 7.83 8.30 34.05 0.28 8.11 16 9 O -0.50 -7.44 17.65 -19.36 -0.34 -7.78 16 10 O -0.50 -5.86 13.44 -42.45 -0.57 -6.43 16 11 O -0.13 -1.98 9.84 4.74 0.05 -1.94 16 12 N -0.53 -9.05 4.48 -227.74 -1.02 -10.07 16 13 C 0.04 0.84 4.60 -3.70 -0.02 0.82 16 14 C 0.20 4.67 3.17 -67.49 -0.21 4.46 16 15 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 16 C -0.14 -3.26 7.92 37.16 0.29 -2.97 16 17 N -0.58 -13.94 2.83 -157.01 -0.44 -14.38 16 18 C -0.26 -6.82 6.80 -15.06 -0.10 -6.92 16 19 H 0.05 1.35 7.11 -52.48 -0.37 0.98 16 20 C 0.04 0.97 3.22 -17.43 -0.06 0.91 16 21 N -0.87 -24.45 11.84 55.49 0.66 -23.79 16 22 Si 0.88 20.72 29.61 -169.99 -5.03 15.69 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 C 0.17 3.59 3.66 -67.49 -0.25 3.34 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 28 C -0.13 -2.44 8.17 37.16 0.30 -2.14 16 29 C 0.05 0.80 4.75 -3.70 -0.02 0.78 16 30 H 0.07 0.75 6.38 -51.92 -0.33 0.41 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.16 1.41 8.06 -52.48 -0.42 0.99 16 34 H 0.16 1.63 8.06 -52.49 -0.42 1.20 16 35 H 0.42 2.57 9.11 45.56 0.42 2.98 16 36 H 0.06 1.10 5.97 -51.93 -0.31 0.79 16 37 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.05 1.14 7.63 -51.93 -0.40 0.74 16 39 H 0.09 2.21 5.01 -51.92 -0.26 1.95 16 40 H 0.02 0.43 8.13 -51.93 -0.42 0.00 16 41 H 0.25 6.90 8.32 -40.82 -0.34 6.56 16 42 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.07 1.40 7.69 -51.93 -0.40 1.00 16 44 H 0.05 0.93 7.55 -51.93 -0.39 0.53 16 45 H 0.07 0.97 6.13 -51.93 -0.32 0.65 16 46 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 366.55 15.07 5.52 5.52 Total: -1.00 -31.20 366.55 -8.21 -39.41 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -6.15 Total: 2.24 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -0.88 Total: 1.53 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: -0.81 Total: -48.24 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.87 Total: -16.15 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.20 -8.21 -39.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604460675.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.024 kcal (2) G-P(sol) polarization free energy of solvation -31.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds