Wall clock time and date at job start Tue Mar 31 2020 16:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46835 * 2 1 4 4 C 1.50703 * 109.47003 * 240.00245 * 2 1 3 5 5 C 1.35166 * 125.61214 * 99.71323 * 4 2 1 6 6 C 1.40304 * 107.12853 * 179.90491 * 5 4 2 7 7 C 1.36638 * 106.70239 * 0.35699 * 6 5 4 8 8 C 1.46475 * 126.00017 * 179.80303 * 7 6 5 9 9 O 1.21621 * 119.99383 * 359.97438 * 8 7 6 10 10 O 1.34888 * 120.00333 * 179.97438 * 8 7 6 11 11 O 1.33911 * 125.60613 * 280.02587 * 4 2 1 12 12 N 1.46894 * 109.47262 * 119.99933 * 2 1 3 13 13 C 1.46900 * 110.99899 * 170.69648 * 12 2 1 14 14 C 1.53245 * 109.33759 * 187.25390 * 13 12 2 15 15 H 1.08994 * 109.62829 * 65.88502 * 14 13 12 16 16 C 1.52999 * 109.62488 * 186.46318 * 14 13 12 17 17 N 1.47077 * 108.52248 * 306.16820 * 14 13 12 18 18 C 1.36936 * 120.88202 * 231.16194 * 17 14 13 19 19 H 1.08003 * 119.99425 * 128.59715 * 18 17 14 20 20 C 1.38809 * 120.00338 * 308.58934 * 18 17 14 21 21 N 1.31620 * 119.99868 * 338.04845 * 20 18 17 22 22 Si 1.86794 * 119.99948 * 158.04256 * 20 18 17 23 23 H 1.48501 * 109.47223 * 90.00382 * 22 20 18 24 24 H 1.48497 * 109.47313 * 210.00447 * 22 20 18 25 25 H 1.48503 * 109.47443 * 330.00429 * 22 20 18 26 26 C 1.47080 * 118.23363 * 51.18852 * 17 14 13 27 27 H 1.09000 * 109.63103 * 68.52095 * 26 17 14 28 28 C 1.53005 * 109.62964 * 189.10197 * 26 17 14 29 29 C 1.46901 * 111.00247 * 294.99926 * 12 2 1 30 30 H 1.09007 * 109.47112 * 299.99926 * 1 2 3 31 31 H 1.09002 * 109.47511 * 59.99607 * 1 2 3 32 32 H 1.09003 * 109.47232 * 180.02562 * 1 2 3 33 33 H 1.08004 * 126.43317 * 0.03245 * 5 4 2 34 34 H 1.08002 * 126.65182 * 180.11134 * 6 5 4 35 35 H 0.96700 * 116.99838 * 179.97438 * 10 8 7 36 36 H 1.08995 * 109.49372 * 307.21418 * 13 12 2 37 37 H 1.08997 * 109.49340 * 67.29522 * 13 12 2 38 38 H 1.08997 * 109.47640 * 68.08737 * 16 14 13 39 39 H 1.09007 * 109.47127 * 188.08462 * 16 14 13 40 40 H 1.08997 * 109.47373 * 308.08277 * 16 14 13 41 41 H 0.97000 * 119.99667 * 175.07502 * 21 20 18 42 42 H 1.08996 * 109.47419 * 179.03008 * 28 26 17 43 43 H 1.08998 * 109.46699 * 299.03230 * 28 26 17 44 44 H 1.09000 * 109.46716 * 59.02671 * 28 26 17 45 45 H 1.08998 * 109.48875 * 52.78752 * 29 12 2 46 46 H 1.08996 * 109.51473 * 292.72125 * 29 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.4694 -0.1124 -2.3612 6 6 2.8443 -1.1319 -3.2493 7 6 2.6065 -2.3162 -2.6107 8 6 2.8453 -3.6532 -3.1592 9 8 3.2953 -3.7782 -4.2821 10 8 2.5661 -4.7457 -2.4189 11 8 2.1134 -2.0380 -1.3858 12 7 2.0196 -0.6924 1.1994 13 6 3.4711 -0.9070 1.1276 14 6 3.9128 -1.7860 2.3027 15 1 3.4825 -2.7818 2.1971 16 6 5.4396 -1.8815 2.3274 17 7 3.4360 -1.1714 3.5509 18 6 4.2915 -0.9505 4.5971 19 1 4.3457 0.0270 5.0532 20 6 5.0889 -1.9829 5.0716 21 7 4.7482 -3.2342 4.8467 22 14 6.6455 -1.5964 6.0291 23 1 6.3273 -1.5096 7.4770 24 1 7.6443 -2.6722 5.8054 25 1 7.2024 -0.2999 5.5661 26 6 2.0158 -0.8010 3.6459 27 1 1.4031 -1.7021 3.6694 28 6 1.7820 0.0176 4.9172 29 6 1.6487 0.0392 2.4180 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 2.5223 0.9504 -2.5454 34 1 3.2400 -1.0051 -4.2462 35 1 2.7400 -5.6065 -2.8238 36 1 3.7196 -1.4026 0.1892 37 1 3.9838 0.0535 1.1790 38 1 5.8605 -0.9094 2.5844 39 1 5.7457 -2.6178 3.0707 40 1 5.8007 -2.1854 1.3449 41 1 5.3406 -3.9539 5.1152 42 1 0.7324 0.3053 4.9763 43 1 2.0439 -0.5823 5.7888 44 1 2.4033 0.9128 4.8923 45 1 0.5756 0.2298 2.4153 46 1 2.1864 0.9867 2.4517 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604460675.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:58 Heat of formation + Delta-G solvation = -56.394181 kcal Electronic energy + Delta-G solvation = -28904.388188 eV Core-core repulsion = 24989.141070 eV Total energy + Delta-G solvation = -3915.247118 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.87763 -41.04833 -40.17190 -37.29788 -37.22151 -34.62122 -34.24319 -33.71069 -32.06975 -30.31737 -29.29154 -27.64295 -26.78764 -25.74762 -24.48254 -22.94468 -22.36077 -21.88680 -21.11125 -20.84387 -19.51411 -18.68033 -18.14099 -17.79836 -17.11781 -16.87324 -16.41103 -16.24130 -16.09762 -15.63121 -15.44927 -14.87591 -14.70013 -14.58312 -14.24396 -14.18857 -13.95653 -13.69093 -13.38886 -13.30657 -13.12846 -12.95435 -12.77057 -12.68319 -12.50744 -12.43156 -12.32514 -12.23326 -12.15451 -12.08718 -11.92403 -11.55347 -11.48749 -11.20018 -11.08612 -10.10255 -9.69784 -9.27532 -8.39090 -7.67352 -5.53972 -0.27316 1.17864 1.39981 1.42828 1.47817 1.55216 1.78963 2.20999 2.50692 2.84210 3.25478 3.45632 3.58777 3.83903 4.10288 4.11731 4.18307 4.26493 4.28025 4.47697 4.52985 4.54769 4.61097 4.68463 4.70241 4.78131 4.84011 4.84841 4.89207 4.94561 4.95257 5.01870 5.02817 5.23112 5.25422 5.33583 5.35566 5.50179 5.56819 5.69337 5.72786 5.79841 5.86714 6.17047 6.24684 6.58433 6.81274 7.25880 7.84915 8.58386 9.16470 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.014279 B = 0.004172 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.398177 B = 6709.811298 C = 7909.263981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.148 3.852 3 H 0.094 0.906 4 C 0.048 3.952 5 C -0.217 4.217 6 C -0.089 4.089 7 C -0.110 4.110 8 C 0.577 3.423 9 O -0.522 6.522 10 O -0.505 6.505 11 O -0.154 6.154 12 N -0.542 5.542 13 C 0.065 3.935 14 C 0.201 3.799 15 H -0.008 1.008 16 C -0.133 4.133 17 N -0.593 5.593 18 C -0.260 4.260 19 H 0.050 0.950 20 C -0.004 4.004 21 N -0.908 5.908 22 Si 0.931 3.069 23 H -0.283 1.283 24 H -0.293 1.293 25 H -0.268 1.268 26 C 0.161 3.839 27 H 0.003 0.997 28 C -0.118 4.118 29 C 0.060 3.940 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.192 0.808 34 H 0.183 0.817 35 H 0.438 0.562 36 H 0.058 0.942 37 H 0.029 0.971 38 H 0.045 0.955 39 H 0.059 0.941 40 H 0.041 0.959 41 H 0.249 0.751 42 H 0.074 0.926 43 H 0.034 0.966 44 H 0.049 0.951 45 H 0.099 0.901 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.812 7.596 -14.606 18.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.041 3.959 3 H 0.112 0.888 4 C -0.006 4.006 5 C -0.236 4.236 6 C -0.109 4.109 7 C -0.160 4.160 8 C 0.423 3.577 9 O -0.415 6.415 10 O -0.319 6.319 11 O -0.049 6.049 12 N -0.268 5.268 13 C -0.064 4.064 14 C 0.094 3.906 15 H 0.010 0.990 16 C -0.192 4.192 17 N -0.318 5.318 18 C -0.390 4.390 19 H 0.067 0.933 20 C -0.203 4.203 21 N -0.549 5.549 22 Si 0.758 3.242 23 H -0.210 1.210 24 H -0.219 1.219 25 H -0.192 1.192 26 C 0.055 3.945 27 H 0.021 0.979 28 C -0.176 4.176 29 C -0.068 4.068 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.070 0.930 33 H 0.210 0.790 34 H 0.201 0.799 35 H 0.300 0.700 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.092 0.908 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.117 0.883 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.055 7.065 -14.372 17.926 hybrid contribution 1.681 -0.511 0.319 1.785 sum -6.374 6.554 -14.053 16.765 Atomic orbital electron populations 1.21884 0.90652 1.02950 1.04027 1.20603 0.97661 0.94379 0.83307 0.88830 1.23260 0.99125 0.79953 0.98220 1.21934 1.06808 1.02377 0.92511 1.22263 0.97858 0.89120 1.01648 1.20946 1.14401 0.93496 0.87169 1.18886 0.73432 0.83418 0.81940 1.90961 1.43997 1.86785 1.19712 1.84703 1.79185 1.18761 1.49278 1.84230 1.63638 1.25759 1.31317 1.61941 1.13552 1.49259 1.02000 1.22471 0.87271 0.98401 0.98288 1.20120 0.92914 0.92362 0.85167 0.98972 1.21838 0.95872 1.01823 0.99622 1.44324 1.03831 1.72291 1.11340 1.18810 1.17597 0.92696 1.09920 0.93262 1.25986 1.02358 0.94872 0.97050 1.70325 1.35485 0.98868 1.50265 0.85908 0.81405 0.77733 0.79141 1.20955 1.21894 1.19231 1.20740 0.85774 0.94301 0.93700 0.97914 1.21569 1.00527 0.98985 0.96498 1.22593 1.00964 0.94481 0.88793 0.89896 0.89414 0.92953 0.79044 0.79936 0.69962 0.92336 0.95253 0.93546 0.92243 0.94041 0.94197 0.90767 0.94641 0.93143 0.88269 0.94720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.09 71.98 0.65 -1.96 16 2 C 0.15 3.54 2.54 44.17 0.11 3.65 16 3 H 0.09 1.86 8.12 -2.39 -0.02 1.84 16 4 C 0.05 1.22 4.47 24.98 0.11 1.33 16 5 C -0.22 -4.32 10.76 22.06 0.24 -4.09 16 6 C -0.09 -1.96 10.62 22.40 0.24 -1.72 16 7 C -0.11 -3.05 7.18 24.04 0.17 -2.88 16 8 C 0.58 15.57 8.30 69.97 0.58 16.16 16 9 O -0.52 -15.15 17.65 19.44 0.34 -14.81 16 10 O -0.51 -11.92 13.44 -56.65 -0.76 -12.68 16 11 O -0.15 -4.80 9.84 -4.89 -0.05 -4.85 16 12 N -0.54 -17.84 4.48 -874.43 -3.92 -21.76 16 13 C 0.07 2.47 4.60 86.39 0.40 2.87 16 14 C 0.20 9.51 3.17 44.96 0.14 9.65 16 15 H -0.01 -0.42 8.14 -2.39 -0.02 -0.43 16 16 C -0.13 -6.24 7.92 71.98 0.57 -5.67 16 17 N -0.59 -29.01 2.83 -650.65 -1.84 -30.85 16 18 C -0.26 -13.68 6.80 84.03 0.57 -13.11 16 19 H 0.05 2.60 7.11 -2.91 -0.02 2.58 16 20 C 0.00 -0.19 3.22 84.86 0.27 0.08 16 21 N -0.91 -52.98 11.84 21.65 0.26 -52.72 16 22 Si 0.93 43.25 29.61 68.60 2.03 45.28 16 23 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 24 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 C 0.16 6.67 3.66 44.96 0.16 6.84 16 27 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 28 C -0.12 -4.34 8.17 71.98 0.59 -3.75 16 29 C 0.06 1.92 4.75 86.38 0.41 2.33 16 30 H 0.08 1.38 6.38 -2.38 -0.02 1.36 16 31 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.19 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.18 3.13 8.06 -2.91 -0.02 3.11 16 35 H 0.44 5.32 9.11 -74.06 -0.67 4.65 16 36 H 0.06 2.20 5.97 -2.39 -0.01 2.19 16 37 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.05 2.14 7.63 -2.39 -0.02 2.12 16 39 H 0.06 3.12 5.01 -2.38 -0.01 3.11 16 40 H 0.04 1.70 8.13 -2.39 -0.02 1.68 16 41 H 0.25 14.13 8.32 -92.71 -0.77 13.36 16 42 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.03 1.49 7.69 -2.39 -0.02 1.47 16 44 H 0.05 1.82 7.55 -2.39 -0.02 1.80 16 45 H 0.10 2.53 6.13 -2.39 -0.01 2.51 16 46 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -70.32 366.55 1.61 -68.72 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.32 Total: 13.94 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 5.23 Total: 9.73 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -5.50 Total: -105.33 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.47 Total: -32.34 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -70.32 1.61 -68.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604460675.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.321 kcal (2) G-P(sol) polarization free energy of solvation -70.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds