Wall clock time and date at job start Tue Mar 31 2020 16:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46964 * 2 1 4 4 C 1.50697 * 109.47422 * 239.99510 * 2 1 3 5 5 C 1.35173 * 125.60763 * 105.83700 * 4 2 1 6 6 C 1.40310 * 107.12981 * 179.72693 * 5 4 2 7 7 C 1.36644 * 106.69809 * 0.41339 * 6 5 4 8 8 C 1.46473 * 125.99563 * 179.85871 * 7 6 5 9 9 O 1.21627 * 119.99631 * 359.70526 * 8 7 6 10 10 O 1.34895 * 120.00117 * 179.71330 * 8 7 6 11 11 O 1.33914 * 125.61335 * 285.81592 * 4 2 1 12 12 N 1.46904 * 109.47204 * 119.99840 * 2 1 3 13 13 C 1.46900 * 110.99679 * 295.32606 * 12 2 1 14 14 C 1.53243 * 109.33844 * 172.74546 * 13 12 2 15 15 H 1.09001 * 109.78776 * 173.63087 * 14 13 12 16 16 C 1.53001 * 109.62878 * 294.11914 * 14 13 12 17 17 N 1.47086 * 108.52202 * 53.82734 * 14 13 12 18 18 C 1.36937 * 120.87910 * 128.83457 * 17 14 13 19 19 H 1.08000 * 119.99661 * 210.58119 * 18 17 14 20 20 C 1.38807 * 119.99871 * 30.58890 * 18 17 14 21 21 N 1.31614 * 120.00526 * 13.94535 * 20 18 17 22 22 Si 1.86804 * 119.99775 * 193.93939 * 20 18 17 23 23 H 1.48501 * 109.46930 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46758 * 119.99858 * 22 20 18 25 25 H 1.48493 * 109.47409 * 240.00174 * 22 20 18 26 26 C 1.47080 * 118.23665 * 308.81829 * 17 14 13 27 27 H 1.09008 * 109.62716 * 291.47158 * 26 17 14 28 28 C 1.53000 * 109.62974 * 170.89592 * 26 17 14 29 29 C 1.46900 * 111.00108 * 171.01880 * 12 2 1 30 30 H 1.09007 * 109.46706 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47227 * 300.00068 * 1 2 3 32 32 H 1.09001 * 109.46820 * 60.00712 * 1 2 3 33 33 H 1.08000 * 126.43465 * 0.02562 * 5 4 2 34 34 H 1.07994 * 126.65619 * 180.27860 * 6 5 4 35 35 H 0.96703 * 117.00084 * 179.97438 * 10 8 7 36 36 H 1.09007 * 109.48978 * 292.70095 * 13 12 2 37 37 H 1.09000 * 109.49697 * 52.78435 * 13 12 2 38 38 H 1.08998 * 109.47156 * 179.02857 * 16 14 13 39 39 H 1.09001 * 109.46932 * 299.02699 * 16 14 13 40 40 H 1.08994 * 109.47221 * 59.02894 * 16 14 13 41 41 H 0.96998 * 120.00154 * 179.97438 * 21 20 18 42 42 H 1.08997 * 109.46675 * 300.96710 * 28 26 17 43 43 H 1.08995 * 109.47028 * 60.96255 * 28 26 17 44 44 H 1.08998 * 109.46892 * 180.96934 * 28 26 17 45 45 H 1.08991 * 109.49691 * 307.21333 * 29 12 2 46 46 H 1.08998 * 109.48961 * 67.29769 * 29 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 6 2.5775 -0.1160 -2.3150 6 6 2.9126 -1.1345 -3.2200 7 6 2.5418 -2.3141 -2.6383 8 6 2.6974 -3.6483 -3.2224 9 8 3.1917 -3.7749 -4.3264 10 8 2.2924 -4.7366 -2.5359 11 8 2.0126 -2.0347 -1.4289 12 7 2.0197 -0.6925 1.1995 13 6 1.6421 0.0352 2.4184 14 6 2.0097 -0.8055 3.6458 15 1 1.8374 -0.2277 4.5539 16 6 1.1554 -2.0745 3.6741 17 7 3.4319 -1.1693 3.5540 18 6 4.2835 -0.9463 4.6029 19 1 5.3264 -0.7367 4.4165 20 6 3.8062 -0.9899 5.9056 21 7 2.6222 -1.5072 6.1559 22 14 4.8447 -0.3143 7.3038 23 1 6.1247 0.2083 6.7619 24 1 4.1092 0.7839 7.9807 25 1 5.1254 -1.3974 8.2800 26 6 3.9150 -1.7792 2.3058 27 1 3.4895 -2.7770 2.1973 28 6 5.4421 -1.8679 2.3346 29 6 3.4723 -0.9003 1.1312 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 2.7312 0.9437 -2.4563 34 1 3.3722 -1.0103 -4.1893 35 1 2.4153 -5.5956 -2.9625 36 1 2.1757 0.9850 2.4550 37 1 0.5680 0.2209 2.4132 38 1 1.4310 -2.6787 4.5384 39 1 0.1022 -1.8020 3.7422 40 1 1.3244 -2.6467 2.7620 41 1 2.2889 -1.5379 7.0663 42 1 5.8618 -0.8689 2.4519 43 1 5.7540 -2.4935 3.1708 44 1 5.7983 -2.3044 1.4015 45 1 3.7256 -1.3930 0.1926 46 1 3.9804 0.0625 1.1858 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604460676.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:02 Heat of formation + Delta-G solvation = -35.828530 kcal Electronic energy + Delta-G solvation = -28935.904538 eV Core-core repulsion = 25021.549214 eV Total energy + Delta-G solvation = -3914.355324 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.89656 -40.07833 -38.74224 -36.35645 -35.61724 -33.25791 -32.62469 -32.08924 -30.44039 -29.36467 -27.65441 -26.14525 -25.07508 -24.29680 -23.11333 -22.03866 -21.44725 -20.59014 -20.02607 -18.60837 -18.56988 -17.71420 -16.77742 -16.30264 -15.98578 -15.34479 -15.00418 -14.89528 -14.33483 -13.93201 -13.88457 -13.70605 -13.46261 -13.31960 -13.23827 -13.05780 -12.67098 -12.18479 -11.93031 -11.84677 -11.82612 -11.57372 -11.43416 -11.16712 -11.12619 -10.89407 -10.86854 -10.56628 -10.48354 -10.42500 -10.19005 -10.02948 -9.90334 -9.46827 -9.21119 -8.73473 -8.45592 -7.89046 -6.55435 -5.74588 -3.20215 0.70255 2.10180 2.29993 2.74111 3.08771 3.36777 3.45580 3.46568 4.09378 4.46808 4.50336 4.70443 5.00172 5.13684 5.17442 5.29587 5.38539 5.41716 5.53249 5.60409 5.67096 5.77896 5.86363 5.90655 6.04786 6.11868 6.12563 6.15670 6.16849 6.21316 6.33702 6.37041 6.43926 6.63880 6.80215 6.86345 6.98943 7.05940 7.12355 7.26555 7.45796 7.50045 7.63208 7.74642 7.84491 8.00913 8.50267 9.27172 9.87679 10.48150 11.32519 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.018703 B = 0.003657 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.714354 B = 7654.455278 C = 8119.092039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.147 3.853 3 H 0.071 0.929 4 C 0.072 3.928 5 C -0.235 4.235 6 C -0.098 4.098 7 C -0.083 4.083 8 C 0.575 3.425 9 O -0.504 6.504 10 O -0.500 6.500 11 O -0.126 6.126 12 N -0.520 5.520 13 C 0.039 3.961 14 C 0.201 3.799 15 H 0.092 0.908 16 C -0.137 4.137 17 N -0.584 5.584 18 C -0.249 4.249 19 H 0.068 0.932 20 C 0.006 3.994 21 N -0.897 5.897 22 Si 0.898 3.102 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.174 3.826 27 H 0.034 0.966 28 C -0.137 4.137 29 C 0.049 3.951 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.417 0.583 36 H 0.026 0.974 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.019 0.981 40 H 0.034 0.966 41 H 0.251 0.749 42 H 0.051 0.949 43 H 0.064 0.936 44 H 0.037 0.963 45 H 0.057 0.943 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.322 1.435 -16.185 16.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.038 3.962 3 H 0.089 0.911 4 C 0.017 3.983 5 C -0.255 4.255 6 C -0.117 4.117 7 C -0.134 4.134 8 C 0.420 3.580 9 O -0.394 6.394 10 O -0.311 6.311 11 O -0.020 6.020 12 N -0.245 5.245 13 C -0.090 4.090 14 C 0.094 3.906 15 H 0.110 0.890 16 C -0.196 4.196 17 N -0.307 5.307 18 C -0.379 4.379 19 H 0.086 0.914 20 C -0.193 4.193 21 N -0.542 5.542 22 Si 0.728 3.272 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.067 3.933 27 H 0.052 0.948 28 C -0.195 4.195 29 C -0.080 4.080 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.176 0.824 34 H 0.180 0.820 35 H 0.276 0.724 36 H 0.044 0.956 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.038 0.962 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.056 0.944 45 H 0.075 0.925 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -3.637 1.059 -15.886 16.331 hybrid contribution 1.026 0.677 0.290 1.263 sum -2.611 1.736 -15.596 15.908 Atomic orbital electron populations 1.21883 0.92485 1.03591 1.02162 1.20441 0.96466 0.93890 0.85402 0.91136 1.23012 0.97686 0.80305 0.97267 1.21587 1.08126 1.01096 0.94667 1.21903 0.99138 0.89852 1.00847 1.20582 1.12004 0.92621 0.88167 1.18867 0.74131 0.82985 0.81981 1.90986 1.42500 1.86199 1.19751 1.84727 1.77330 1.18115 1.50929 1.84244 1.61886 1.24719 1.31156 1.62103 1.14115 1.47946 1.00359 1.22986 0.99109 0.95831 0.91036 1.20346 0.83455 0.93738 0.93019 0.89021 1.21990 0.96218 0.99979 1.01413 1.44253 1.05397 1.69623 1.11451 1.19184 0.92734 1.41494 0.84494 0.91428 1.25096 0.97256 0.99591 0.97368 1.69986 1.18738 1.46518 1.18921 0.86297 0.79813 0.78369 0.82707 1.20449 1.21752 1.21820 1.20435 0.92518 0.94125 0.86257 0.94807 1.21787 0.96081 1.01537 1.00057 1.22711 0.86396 0.99222 0.99655 0.91089 0.90923 0.92186 0.82373 0.82013 0.72392 0.95558 0.91487 0.90536 0.96181 0.94725 0.93846 0.92992 0.91727 0.94418 0.92467 0.95273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.08 37.16 0.34 -1.34 16 2 C 0.15 1.97 2.55 -68.86 -0.18 1.80 16 3 H 0.07 0.87 8.11 -51.93 -0.42 0.45 16 4 C 0.07 0.96 4.29 -35.40 -0.15 0.81 16 5 C -0.24 -2.67 10.75 -39.89 -0.43 -3.10 16 6 C -0.10 -1.14 10.62 -39.38 -0.42 -1.56 16 7 C -0.08 -1.13 7.18 -36.84 -0.26 -1.39 16 8 C 0.58 7.36 8.30 34.05 0.28 7.64 16 9 O -0.50 -7.09 17.65 -19.36 -0.34 -7.43 16 10 O -0.50 -5.38 13.44 -42.47 -0.57 -5.95 16 11 O -0.13 -1.91 10.21 4.74 0.05 -1.86 16 12 N -0.52 -8.81 3.97 -227.73 -0.91 -9.72 16 13 C 0.04 0.71 4.84 -3.70 -0.02 0.69 16 14 C 0.20 4.53 2.35 -67.48 -0.16 4.37 16 15 H 0.09 2.34 6.33 -51.93 -0.33 2.01 16 16 C -0.14 -3.06 8.96 37.16 0.33 -2.72 16 17 N -0.58 -13.93 2.72 -157.00 -0.43 -14.35 16 18 C -0.25 -6.50 8.61 -15.06 -0.13 -6.63 16 19 H 0.07 1.75 6.28 -52.49 -0.33 1.42 16 20 C 0.01 0.15 4.98 -17.43 -0.09 0.06 16 21 N -0.90 -24.67 9.71 55.49 0.54 -24.13 16 22 Si 0.90 21.15 29.58 -169.99 -5.03 16.12 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 C 0.17 3.64 3.26 -67.49 -0.22 3.42 16 27 H 0.03 0.78 7.63 -51.92 -0.40 0.38 16 28 C -0.14 -2.61 7.96 37.16 0.30 -2.31 16 29 C 0.05 0.89 4.63 -3.70 -0.02 0.88 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.82 6.37 -51.93 -0.33 0.49 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.42 2.17 9.11 45.56 0.42 2.59 16 36 H 0.03 0.49 8.14 -51.92 -0.42 0.07 16 37 H 0.07 1.09 6.12 -51.93 -0.32 0.77 16 38 H 0.08 1.96 6.70 -51.93 -0.35 1.61 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.03 0.76 7.08 -51.93 -0.37 0.39 16 41 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 42 H 0.05 0.99 7.51 -51.93 -0.39 0.60 16 43 H 0.06 1.32 7.62 -51.93 -0.40 0.92 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.06 1.00 6.22 -51.93 -0.32 0.67 16 46 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 365.34 15.07 5.51 5.51 Total: -1.00 -30.49 365.34 -8.05 -38.54 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.05 Total: 2.66 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -0.82 Total: 0.61 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: -0.79 Total: -48.19 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.86 Total: -15.24 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.49 -8.05 -38.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604460676.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.712 kcal (2) G-P(sol) polarization free energy of solvation -30.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds