Wall clock time and date at job start Tue Mar 31 2020 16:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46964 * 2 1 4 4 C 1.50697 * 109.47422 * 239.99510 * 2 1 3 5 5 C 1.35173 * 125.60763 * 105.83700 * 4 2 1 6 6 C 1.40310 * 107.12981 * 179.72693 * 5 4 2 7 7 C 1.36644 * 106.69809 * 0.41339 * 6 5 4 8 8 C 1.46473 * 125.99563 * 179.85871 * 7 6 5 9 9 O 1.21627 * 119.99631 * 359.70526 * 8 7 6 10 10 O 1.34895 * 120.00117 * 179.71330 * 8 7 6 11 11 O 1.33914 * 125.61335 * 285.81592 * 4 2 1 12 12 N 1.46904 * 109.47204 * 119.99840 * 2 1 3 13 13 C 1.46900 * 110.99679 * 295.32606 * 12 2 1 14 14 C 1.53243 * 109.33844 * 172.74546 * 13 12 2 15 15 H 1.09001 * 109.78776 * 173.63087 * 14 13 12 16 16 C 1.53001 * 109.62878 * 294.11914 * 14 13 12 17 17 N 1.47086 * 108.52202 * 53.82734 * 14 13 12 18 18 C 1.36937 * 120.87910 * 128.83457 * 17 14 13 19 19 H 1.08000 * 119.99661 * 210.58119 * 18 17 14 20 20 C 1.38807 * 119.99871 * 30.58890 * 18 17 14 21 21 N 1.31614 * 120.00526 * 13.94535 * 20 18 17 22 22 Si 1.86804 * 119.99775 * 193.93939 * 20 18 17 23 23 H 1.48501 * 109.46930 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46758 * 119.99858 * 22 20 18 25 25 H 1.48493 * 109.47409 * 240.00174 * 22 20 18 26 26 C 1.47080 * 118.23665 * 308.81829 * 17 14 13 27 27 H 1.09008 * 109.62716 * 291.47158 * 26 17 14 28 28 C 1.53000 * 109.62974 * 170.89592 * 26 17 14 29 29 C 1.46900 * 111.00108 * 171.01880 * 12 2 1 30 30 H 1.09007 * 109.46706 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47227 * 300.00068 * 1 2 3 32 32 H 1.09001 * 109.46820 * 60.00712 * 1 2 3 33 33 H 1.08000 * 126.43465 * 0.02562 * 5 4 2 34 34 H 1.07994 * 126.65619 * 180.27860 * 6 5 4 35 35 H 0.96703 * 117.00084 * 179.97438 * 10 8 7 36 36 H 1.09007 * 109.48978 * 292.70095 * 13 12 2 37 37 H 1.09000 * 109.49697 * 52.78435 * 13 12 2 38 38 H 1.08998 * 109.47156 * 179.02857 * 16 14 13 39 39 H 1.09001 * 109.46932 * 299.02699 * 16 14 13 40 40 H 1.08994 * 109.47221 * 59.02894 * 16 14 13 41 41 H 0.96998 * 120.00154 * 179.97438 * 21 20 18 42 42 H 1.08997 * 109.46675 * 300.96710 * 28 26 17 43 43 H 1.08995 * 109.47028 * 60.96255 * 28 26 17 44 44 H 1.08998 * 109.46892 * 180.96934 * 28 26 17 45 45 H 1.08991 * 109.49691 * 307.21333 * 29 12 2 46 46 H 1.08998 * 109.48961 * 67.29769 * 29 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 6 2.5775 -0.1160 -2.3150 6 6 2.9126 -1.1345 -3.2200 7 6 2.5418 -2.3141 -2.6383 8 6 2.6974 -3.6483 -3.2224 9 8 3.1917 -3.7749 -4.3264 10 8 2.2924 -4.7366 -2.5359 11 8 2.0126 -2.0347 -1.4289 12 7 2.0197 -0.6925 1.1995 13 6 1.6421 0.0352 2.4184 14 6 2.0097 -0.8055 3.6458 15 1 1.8374 -0.2277 4.5539 16 6 1.1554 -2.0745 3.6741 17 7 3.4319 -1.1693 3.5540 18 6 4.2835 -0.9463 4.6029 19 1 5.3264 -0.7367 4.4165 20 6 3.8062 -0.9899 5.9056 21 7 2.6222 -1.5072 6.1559 22 14 4.8447 -0.3143 7.3038 23 1 6.1247 0.2083 6.7619 24 1 4.1092 0.7839 7.9807 25 1 5.1254 -1.3974 8.2800 26 6 3.9150 -1.7792 2.3058 27 1 3.4895 -2.7770 2.1973 28 6 5.4421 -1.8679 2.3346 29 6 3.4723 -0.9003 1.1312 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 2.7312 0.9437 -2.4563 34 1 3.3722 -1.0103 -4.1893 35 1 2.4153 -5.5956 -2.9625 36 1 2.1757 0.9850 2.4550 37 1 0.5680 0.2209 2.4132 38 1 1.4310 -2.6787 4.5384 39 1 0.1022 -1.8020 3.7422 40 1 1.3244 -2.6467 2.7620 41 1 2.2889 -1.5379 7.0663 42 1 5.8618 -0.8689 2.4519 43 1 5.7540 -2.4935 3.1708 44 1 5.7983 -2.3044 1.4015 45 1 3.7256 -1.3930 0.1926 46 1 3.9804 0.0625 1.1858 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604460676.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:01 Heat of formation + Delta-G solvation = -55.260802 kcal Electronic energy + Delta-G solvation = -28936.747184 eV Core-core repulsion = 25021.549214 eV Total energy + Delta-G solvation = -3915.197971 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.85979 -41.02531 -40.22201 -37.26987 -37.09590 -34.39084 -34.20631 -33.63225 -31.94250 -30.40274 -29.42086 -27.61307 -26.49285 -25.64791 -24.64715 -23.16673 -22.52147 -22.05627 -21.09528 -20.35040 -19.49438 -18.66671 -18.08041 -17.74525 -17.31574 -16.62120 -16.43228 -16.18056 -15.73482 -15.67040 -15.20976 -14.95204 -14.85491 -14.58301 -14.17586 -14.13748 -13.95171 -13.64853 -13.31670 -13.26487 -13.07856 -12.82548 -12.74239 -12.62198 -12.61003 -12.47748 -12.25670 -12.18371 -12.14911 -11.98741 -11.88299 -11.62058 -11.22000 -11.09822 -10.97371 -10.44687 -9.68899 -9.24578 -8.46495 -7.75184 -5.22549 -0.25686 1.18759 1.40559 1.47721 1.51219 1.59272 1.80878 2.22370 2.55790 2.86656 3.38894 3.47661 3.61874 3.85033 4.10589 4.13434 4.18377 4.27190 4.30211 4.49419 4.55251 4.56184 4.62654 4.63861 4.75246 4.79422 4.81027 4.82023 4.91416 4.96956 5.03732 5.10748 5.25786 5.26745 5.30220 5.35919 5.38240 5.41900 5.53232 5.74329 5.79503 5.85622 6.06001 6.19422 6.26927 6.53164 6.83648 7.28922 7.96838 8.52641 9.29407 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.018703 B = 0.003657 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.714354 B = 7654.455278 C = 8119.092039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.148 3.852 3 H 0.091 0.909 4 C 0.052 3.948 5 C -0.218 4.218 6 C -0.090 4.090 7 C -0.107 4.107 8 C 0.579 3.421 9 O -0.522 6.522 10 O -0.504 6.504 11 O -0.152 6.152 12 N -0.531 5.531 13 C 0.054 3.946 14 C 0.197 3.803 15 H 0.058 0.942 16 C -0.119 4.119 17 N -0.598 5.598 18 C -0.252 4.252 19 H 0.068 0.932 20 C -0.043 4.043 21 N -0.921 5.921 22 Si 0.956 3.044 23 H -0.271 1.271 24 H -0.293 1.293 25 H -0.298 1.298 26 C 0.167 3.833 27 H 0.009 0.991 28 C -0.128 4.128 29 C 0.066 3.934 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.189 0.811 34 H 0.182 0.818 35 H 0.438 0.562 36 H 0.024 0.976 37 H 0.090 0.910 38 H 0.038 0.962 39 H 0.036 0.964 40 H 0.031 0.969 41 H 0.245 0.755 42 H 0.051 0.949 43 H 0.043 0.957 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.163 2.981 -18.281 18.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.040 3.960 3 H 0.109 0.891 4 C -0.002 4.002 5 C -0.237 4.237 6 C -0.109 4.109 7 C -0.157 4.157 8 C 0.424 3.576 9 O -0.415 6.415 10 O -0.318 6.318 11 O -0.047 6.047 12 N -0.257 5.257 13 C -0.074 4.074 14 C 0.091 3.909 15 H 0.076 0.924 16 C -0.178 4.178 17 N -0.322 5.322 18 C -0.383 4.383 19 H 0.085 0.915 20 C -0.239 4.239 21 N -0.567 5.567 22 Si 0.785 3.215 23 H -0.196 1.196 24 H -0.220 1.220 25 H -0.226 1.226 26 C 0.061 3.939 27 H 0.027 0.973 28 C -0.186 4.186 29 C -0.063 4.063 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.206 0.794 34 H 0.200 0.800 35 H 0.301 0.699 36 H 0.043 0.957 37 H 0.108 0.892 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -3.477 2.592 -18.012 18.526 hybrid contribution 0.959 0.117 0.876 1.304 sum -2.518 2.709 -17.135 17.530 Atomic orbital electron populations 1.21871 0.91173 1.02980 1.03626 1.20554 0.97470 0.94374 0.83612 0.89136 1.23131 0.99026 0.80062 0.97977 1.21928 1.06072 1.02370 0.93351 1.22247 0.98012 0.89229 1.01461 1.20917 1.12962 0.93567 0.88224 1.18852 0.73716 0.83320 0.81681 1.90971 1.43548 1.86534 1.20434 1.84693 1.76867 1.19119 1.51147 1.84206 1.62717 1.25745 1.32017 1.61979 1.13358 1.48992 1.01349 1.22666 1.00391 0.94539 0.89846 1.20270 0.83023 0.93723 0.93886 0.92428 1.21765 0.97238 0.99502 0.99310 1.44479 1.05747 1.70048 1.11882 1.19427 0.93099 1.40445 0.85303 0.91481 1.25718 0.98387 1.00503 0.99297 1.70152 1.20015 1.47854 1.18672 0.85385 0.78760 0.77277 0.80035 1.19575 1.21986 1.22553 1.20566 0.93559 0.93447 0.86335 0.97326 1.21685 0.94849 1.01271 1.00749 1.22412 0.87272 0.98391 0.98251 0.92714 0.90554 0.89606 0.79410 0.80029 0.69918 0.95743 0.89223 0.94317 0.94453 0.95014 0.94552 0.93029 0.93745 0.91546 0.91512 0.95279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.08 71.98 0.65 -2.19 16 2 C 0.15 3.54 2.55 44.17 0.11 3.65 16 3 H 0.09 1.86 8.11 -2.39 -0.02 1.84 16 4 C 0.05 1.25 4.29 24.98 0.11 1.35 16 5 C -0.22 -4.14 10.75 22.07 0.24 -3.90 16 6 C -0.09 -1.84 10.62 22.40 0.24 -1.60 16 7 C -0.11 -2.71 7.18 24.04 0.17 -2.54 16 8 C 0.58 14.15 8.30 69.97 0.58 14.73 16 9 O -0.52 -14.07 17.65 19.42 0.34 -13.73 16 10 O -0.50 -10.37 13.44 -56.71 -0.76 -11.13 16 11 O -0.15 -4.35 10.21 -4.89 -0.05 -4.40 16 12 N -0.53 -17.11 3.97 -874.40 -3.48 -20.59 16 13 C 0.05 1.90 4.84 86.38 0.42 2.32 16 14 C 0.20 8.98 2.35 44.96 0.11 9.09 16 15 H 0.06 3.02 6.33 -2.39 -0.02 3.00 16 16 C -0.12 -5.42 8.96 71.98 0.64 -4.78 16 17 N -0.60 -28.87 2.72 -650.62 -1.77 -30.63 16 18 C -0.25 -13.33 8.61 84.03 0.72 -12.61 16 19 H 0.07 3.49 6.28 -2.91 -0.02 3.47 16 20 C -0.04 -2.33 4.98 84.86 0.42 -1.91 16 21 N -0.92 -52.25 9.71 21.65 0.21 -52.04 16 22 Si 0.96 44.22 29.58 68.60 2.03 46.25 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 25 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 26 C 0.17 7.00 3.26 44.96 0.15 7.14 16 27 H 0.01 0.42 7.63 -2.38 -0.02 0.40 16 28 C -0.13 -4.80 7.96 71.98 0.57 -4.23 16 29 C 0.07 2.28 4.63 86.38 0.40 2.68 16 30 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.08 1.49 6.37 -2.39 -0.02 1.48 16 32 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.19 2.35 8.06 -2.91 -0.02 2.33 16 34 H 0.18 2.89 8.06 -2.91 -0.02 2.86 16 35 H 0.44 4.07 9.11 -74.06 -0.67 3.39 16 36 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.09 2.73 6.12 -2.39 -0.01 2.72 16 38 H 0.04 2.04 6.70 -2.39 -0.02 2.02 16 39 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.03 1.42 7.08 -2.39 -0.02 1.40 16 41 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 42 H 0.05 1.92 7.51 -2.39 -0.02 1.90 16 43 H 0.04 1.81 7.62 -2.39 -0.02 1.80 16 44 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.07 2.20 6.22 -2.39 -0.01 2.18 16 46 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -67.27 365.34 2.39 -64.88 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.33 Total: 14.18 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 5.54 Total: 7.22 kcal Atomic # 7 Polarization: -98.23 SS G_CDS: -5.03 Total: -103.26 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -0.47 Total: -29.26 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -67.27 2.39 -64.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604460676.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.615 kcal (2) G-P(sol) polarization free energy of solvation -67.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds