Wall clock time and date at job start Tue Mar 31 2020 16:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47229 * 2 1 4 4 C 1.50695 * 109.47390 * 239.98962 * 2 1 3 5 5 C 1.35170 * 125.60670 * 107.58896 * 4 2 1 6 6 C 1.40303 * 107.12875 * 180.02562 * 5 4 2 7 7 C 1.36641 * 106.70413 * 0.02562 * 6 5 4 8 8 C 1.46467 * 126.00114 * 180.02562 * 7 6 5 9 9 O 1.21623 * 119.99692 * 359.97438 * 8 7 6 10 10 O 1.34893 * 120.00492 * 179.97438 * 8 7 6 11 11 O 1.33912 * 125.61403 * 287.60394 * 4 2 1 12 12 N 1.46906 * 109.46917 * 119.99735 * 2 1 3 13 13 C 1.46907 * 110.99550 * 297.18752 * 12 2 1 14 14 C 1.53243 * 109.33725 * 172.74621 * 13 12 2 15 15 H 1.09001 * 109.78588 * 294.02669 * 14 13 12 16 16 C 1.52998 * 109.62793 * 173.54057 * 14 13 12 17 17 N 1.47075 * 108.52099 * 53.83090 * 14 13 12 18 18 C 1.36940 * 120.88201 * 128.78995 * 17 14 13 19 19 H 1.08000 * 120.00298 * 233.18274 * 18 17 14 20 20 C 1.38814 * 119.99774 * 53.17815 * 18 17 14 21 21 N 1.31621 * 119.99984 * 209.49391 * 20 18 17 22 22 Si 1.86801 * 119.99912 * 29.49418 * 20 18 17 23 23 H 1.48497 * 109.47223 * 84.91923 * 22 20 18 24 24 H 1.48501 * 109.46819 * 204.91568 * 22 20 18 25 25 H 1.48498 * 109.47323 * 324.91502 * 22 20 18 26 26 C 1.47082 * 118.23900 * 308.81784 * 17 14 13 27 27 H 1.09000 * 109.79080 * 170.98990 * 26 17 14 28 28 C 1.53001 * 109.62339 * 291.47066 * 26 17 14 29 29 C 1.46891 * 111.00120 * 172.89288 * 12 2 1 30 30 H 1.09002 * 109.47511 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47317 * 300.00453 * 1 2 3 32 32 H 1.08996 * 109.47012 * 60.00620 * 1 2 3 33 33 H 1.08004 * 126.43938 * 359.97438 * 5 4 2 34 34 H 1.08006 * 126.65034 * 179.74310 * 6 5 4 35 35 H 0.96694 * 117.00324 * 179.97438 * 10 8 7 36 36 H 1.08997 * 109.49874 * 292.70936 * 13 12 2 37 37 H 1.09004 * 109.49296 * 52.79176 * 13 12 2 38 38 H 1.08998 * 109.47523 * 293.65211 * 16 14 13 39 39 H 1.09004 * 109.47123 * 53.65139 * 16 14 13 40 40 H 1.09003 * 109.47234 * 173.64331 * 16 14 13 41 41 H 0.97001 * 119.99640 * 179.97438 * 21 20 18 42 42 H 1.09002 * 109.46550 * 179.03058 * 28 26 17 43 43 H 1.08996 * 109.47140 * 299.02782 * 28 26 17 44 44 H 1.08999 * 109.46916 * 59.03486 * 28 26 17 45 45 H 1.09003 * 109.49271 * 307.20629 * 29 12 2 46 46 H 1.08999 * 109.50057 * 67.25966 * 29 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 6 2.6078 -0.1192 -2.3009 6 6 2.9242 -1.1361 -3.2143 7 6 2.5202 -2.3122 -2.6481 8 6 2.6502 -3.6439 -3.2439 9 8 3.1567 -3.7718 -4.3423 10 8 2.2083 -4.7284 -2.5746 11 8 1.9819 -2.0318 -1.4430 12 7 2.0196 -0.6925 1.1995 13 6 1.6042 0.0116 2.4202 14 6 1.9754 -0.8326 3.6441 15 1 1.3910 -1.7527 3.6487 16 6 1.6935 -0.0382 4.9209 17 7 3.4079 -1.1575 3.5705 18 6 4.2374 -0.9228 4.6345 19 1 5.1399 -0.3453 4.4986 20 6 3.9183 -1.4271 5.8878 21 7 4.3094 -0.7916 6.9720 22 14 2.9336 -3.0077 6.0356 23 1 3.8517 -4.1721 5.9560 24 1 2.2213 -3.0271 7.3384 25 1 1.9451 -3.0803 4.9298 26 6 3.9261 -1.7407 2.3236 27 1 5.0149 -1.7780 2.3582 28 6 3.3688 -3.1546 2.1472 29 6 3.4781 -0.8608 1.1518 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 2.7892 0.9377 -2.4295 34 1 3.3919 -1.0126 -4.1800 35 1 2.3154 -5.5859 -3.0084 36 1 2.1116 0.9747 2.4752 37 1 0.5258 0.1688 2.4002 38 1 2.3672 0.8170 4.9731 39 1 0.6614 0.3125 4.9103 40 1 1.8506 -0.6782 5.7892 41 1 4.0860 -1.1438 7.8478 42 1 3.7407 -3.5778 1.2141 43 1 3.6889 -3.7781 2.9819 44 1 2.2799 -3.1151 2.1198 45 1 3.7587 -1.3363 0.2119 46 1 3.9595 0.1145 1.2239 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604460677.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:04 Heat of formation + Delta-G solvation = -55.058172 kcal Electronic energy + Delta-G solvation = -29068.597383 eV Core-core repulsion = 25153.408199 eV Total energy + Delta-G solvation = -3915.189184 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.85171 -41.02931 -40.35300 -37.27082 -37.22410 -34.69022 -34.16658 -33.71733 -32.31141 -30.40484 -29.71621 -27.74888 -26.44352 -25.80129 -24.46833 -22.91985 -22.69886 -22.35155 -21.07924 -20.26989 -19.49135 -18.66770 -18.52871 -17.80869 -17.32994 -16.68034 -16.47225 -16.26720 -16.00469 -15.60072 -15.29833 -15.18062 -14.76251 -14.55013 -14.47054 -14.17796 -14.06378 -13.93924 -13.74696 -13.20429 -13.16575 -12.91130 -12.85055 -12.74084 -12.69402 -12.43381 -12.33240 -12.21891 -12.20520 -12.06042 -11.78713 -11.60168 -11.55661 -11.16018 -11.08498 -10.34375 -9.69303 -9.30753 -8.33848 -8.21915 -5.67570 -0.25615 1.18527 1.35199 1.39926 1.42787 1.53559 1.80978 2.22222 2.45118 2.80654 3.02225 3.40181 3.47425 3.84717 4.07230 4.08482 4.13828 4.23756 4.26024 4.45672 4.48028 4.52374 4.56550 4.60743 4.66217 4.76656 4.77323 4.82973 4.84659 4.90759 4.95005 5.00557 5.03150 5.16221 5.26377 5.29491 5.34264 5.36272 5.41232 5.54619 5.68528 5.84004 5.98706 6.12391 6.19741 6.34916 6.83220 7.15222 7.66148 8.27740 8.95087 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.018134 B = 0.004015 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.667120 B = 6972.039643 C = 7721.806121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.150 3.850 3 H 0.092 0.908 4 C 0.053 3.947 5 C -0.220 4.220 6 C -0.092 4.092 7 C -0.105 4.105 8 C 0.578 3.422 9 O -0.524 6.524 10 O -0.503 6.503 11 O -0.148 6.148 12 N -0.532 5.532 13 C 0.058 3.942 14 C 0.166 3.834 15 H 0.029 0.971 16 C -0.127 4.127 17 N -0.601 5.601 18 C -0.270 4.270 19 H 0.026 0.974 20 C 0.035 3.965 21 N -0.923 5.923 22 Si 0.902 3.098 23 H -0.299 1.299 24 H -0.301 1.301 25 H -0.243 1.243 26 C 0.159 3.841 27 H 0.055 0.945 28 C -0.138 4.138 29 C 0.067 3.933 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.187 0.813 34 H 0.180 0.820 35 H 0.438 0.562 36 H 0.032 0.968 37 H 0.100 0.900 38 H 0.043 0.957 39 H 0.071 0.929 40 H 0.034 0.966 41 H 0.263 0.737 42 H 0.057 0.943 43 H 0.023 0.977 44 H 0.053 0.947 45 H 0.071 0.929 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.175 0.787 -20.244 22.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.042 3.958 3 H 0.109 0.891 4 C -0.001 4.001 5 C -0.239 4.239 6 C -0.111 4.111 7 C -0.155 4.155 8 C 0.424 3.576 9 O -0.416 6.416 10 O -0.317 6.317 11 O -0.043 6.043 12 N -0.258 5.258 13 C -0.071 4.071 14 C 0.061 3.939 15 H 0.047 0.953 16 C -0.185 4.185 17 N -0.326 5.326 18 C -0.400 4.400 19 H 0.044 0.956 20 C -0.166 4.166 21 N -0.563 5.563 22 Si 0.730 3.270 23 H -0.227 1.227 24 H -0.228 1.228 25 H -0.167 1.167 26 C 0.053 3.947 27 H 0.073 0.927 28 C -0.197 4.197 29 C -0.063 4.063 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.204 0.796 34 H 0.197 0.803 35 H 0.301 0.699 36 H 0.050 0.950 37 H 0.118 0.882 38 H 0.062 0.938 39 H 0.090 0.910 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.042 0.958 44 H 0.072 0.928 45 H 0.089 0.911 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -9.416 0.437 -19.947 22.062 hybrid contribution 0.683 -0.813 0.425 1.143 sum -8.733 -0.375 -19.522 21.390 Atomic orbital electron populations 1.21896 0.90935 1.03160 1.03825 1.20528 0.97552 0.94329 0.83396 0.89063 1.23120 0.98890 0.80181 0.97942 1.21927 1.05930 1.02375 0.93644 1.22239 0.98092 0.89410 1.01405 1.20873 1.12588 0.93560 0.88495 1.18855 0.73821 0.83297 0.81611 1.90975 1.43543 1.86329 1.20760 1.84679 1.75970 1.19422 1.51660 1.84190 1.62213 1.25803 1.32091 1.61974 1.12045 1.50242 1.01509 1.22588 1.00962 0.94798 0.88740 1.20861 0.84742 0.94943 0.93369 0.95310 1.21745 0.99992 0.99828 0.96890 1.44488 1.04690 1.71747 1.11710 1.18167 1.05900 1.28639 0.87277 0.95649 1.26146 0.96961 0.98201 0.95255 1.70083 1.49297 1.38577 0.98360 0.86542 0.79994 0.83393 0.77114 1.22658 1.22814 1.16686 1.20865 0.96386 0.91608 0.85888 0.92664 1.21961 1.01445 0.97107 0.99226 1.22325 0.87399 0.98251 0.98283 0.92462 0.90143 0.89770 0.79590 0.80254 0.69946 0.95011 0.88172 0.93762 0.91016 0.94733 0.92749 0.92436 0.95805 0.92758 0.91066 0.95457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.04 71.98 0.65 -1.77 16 2 C 0.15 3.16 2.55 44.17 0.11 3.28 16 3 H 0.09 1.66 8.11 -2.39 -0.02 1.64 16 4 C 0.05 1.15 4.26 24.98 0.11 1.26 16 5 C -0.22 -3.91 10.75 22.06 0.24 -3.67 16 6 C -0.09 -1.79 10.62 22.40 0.24 -1.55 16 7 C -0.11 -2.51 7.18 24.04 0.17 -2.34 16 8 C 0.58 13.41 8.30 69.97 0.58 13.99 16 9 O -0.52 -13.68 17.65 19.43 0.34 -13.34 16 10 O -0.50 -9.54 13.44 -56.70 -0.76 -10.30 16 11 O -0.15 -3.89 10.42 -4.88 -0.05 -3.94 16 12 N -0.53 -15.28 3.99 -874.41 -3.49 -18.77 16 13 C 0.06 1.76 4.73 86.38 0.41 2.17 16 14 C 0.17 6.61 2.12 44.96 0.10 6.70 16 15 H 0.03 1.23 6.16 -2.39 -0.01 1.21 16 16 C -0.13 -5.21 7.91 71.98 0.57 -4.64 16 17 N -0.60 -27.37 1.94 -650.64 -1.26 -28.63 16 18 C -0.27 -14.82 8.63 84.03 0.72 -14.09 16 19 H 0.03 1.59 8.06 -2.91 -0.02 1.57 16 20 C 0.03 1.96 3.57 84.86 0.30 2.26 16 21 N -0.92 -54.97 13.97 21.65 0.30 -54.67 16 22 Si 0.90 44.98 25.72 68.60 1.76 46.74 16 23 H -0.30 -15.27 7.11 99.48 0.71 -14.56 16 24 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 25 H -0.24 -11.49 5.43 99.48 0.54 -10.95 16 26 C 0.16 6.30 3.31 44.96 0.15 6.45 16 27 H 0.06 2.32 7.96 -2.39 -0.02 2.30 16 28 C -0.14 -5.23 9.21 71.98 0.66 -4.57 16 29 C 0.07 2.15 4.75 86.38 0.41 2.56 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 1.25 6.32 -2.38 -0.02 1.24 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.19 2.19 8.06 -2.91 -0.02 2.16 16 34 H 0.18 2.76 8.06 -2.91 -0.02 2.74 16 35 H 0.44 3.51 9.11 -74.06 -0.67 2.84 16 36 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.10 2.46 6.04 -2.39 -0.01 2.44 16 38 H 0.04 2.00 7.71 -2.39 -0.02 1.98 16 39 H 0.07 2.32 8.14 -2.39 -0.02 2.31 16 40 H 0.03 1.60 4.24 -2.39 -0.01 1.59 16 41 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 42 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.02 0.96 7.85 -2.39 -0.02 0.94 16 44 H 0.05 2.09 7.06 -2.39 -0.02 2.07 16 45 H 0.07 2.17 6.43 -2.39 -0.02 2.15 16 46 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -69.69 362.04 2.43 -67.27 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 0.16 Total: 9.60 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 5.42 Total: 6.03 kcal Atomic # 7 Polarization: -97.62 SS G_CDS: -4.45 Total: -102.07 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.47 Total: -27.58 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.76 Total: 46.74 kcal Total: -69.69 2.43 -67.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604460677.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.209 kcal (2) G-P(sol) polarization free energy of solvation -69.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds