Wall clock time and date at job start Tue Mar 31 2020 16:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47358 * 2 1 4 4 C 1.50698 * 109.47134 * 120.00211 * 2 1 3 5 5 C 1.35172 * 125.60539 * 259.43719 * 4 2 1 6 6 C 1.40309 * 107.12359 * 179.91122 * 5 4 2 7 7 C 1.36645 * 106.70583 * 0.35088 * 6 5 4 8 8 C 1.46460 * 125.99997 * 179.80980 * 7 6 5 9 9 O 1.21625 * 119.99940 * 359.97438 * 8 7 6 10 10 O 1.34895 * 120.00224 * 179.97438 * 8 7 6 11 11 O 1.33910 * 125.60979 * 79.74918 * 4 2 1 12 12 N 1.46897 * 109.46848 * 240.00155 * 2 1 3 13 13 C 1.46900 * 111.00313 * 55.12830 * 12 2 1 14 14 C 1.53242 * 109.33982 * 187.25156 * 13 12 2 15 15 H 1.09002 * 109.62446 * 65.89062 * 14 13 12 16 16 C 1.53005 * 109.78548 * 186.36558 * 14 13 12 17 17 N 1.47075 * 108.52267 * 306.17184 * 14 13 12 18 18 C 1.36937 * 120.87894 * 231.20342 * 17 14 13 19 19 H 1.08006 * 119.99514 * 126.96535 * 18 17 14 20 20 C 1.38808 * 120.00409 * 306.96605 * 18 17 14 21 21 N 1.31621 * 120.00324 * 158.35452 * 20 18 17 22 22 Si 1.86809 * 119.99838 * 338.35271 * 20 18 17 23 23 H 1.48497 * 109.46761 * 92.71244 * 22 20 18 24 24 H 1.48504 * 109.46937 * 212.71024 * 22 20 18 25 25 H 1.48496 * 109.47127 * 332.71212 * 22 20 18 26 26 C 1.47078 * 118.23737 * 51.19238 * 17 14 13 27 27 H 1.08997 * 109.63495 * 68.51935 * 26 17 14 28 28 C 1.52999 * 109.62692 * 189.10623 * 26 17 14 29 29 C 1.46903 * 111.00319 * 179.43646 * 12 2 1 30 30 H 1.08997 * 109.47512 * 59.99664 * 1 2 3 31 31 H 1.09001 * 109.47358 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46542 * 299.99907 * 1 2 3 33 33 H 1.07995 * 126.43958 * 0.02956 * 5 4 2 34 34 H 1.08004 * 126.65140 * 180.11822 * 6 5 4 35 35 H 0.96706 * 117.00398 * 179.97438 * 10 8 7 36 36 H 1.08994 * 109.49290 * 307.21617 * 13 12 2 37 37 H 1.09001 * 109.49113 * 67.29798 * 13 12 2 38 38 H 1.08997 * 109.46658 * 186.47015 * 16 14 13 39 39 H 1.08996 * 109.47431 * 306.47176 * 16 14 13 40 40 H 1.08994 * 109.46957 * 66.47437 * 16 14 13 41 41 H 0.96996 * 120.00133 * 180.02562 * 21 20 18 42 42 H 1.09002 * 109.47004 * 179.02988 * 28 26 17 43 43 H 1.09001 * 109.46752 * 299.01938 * 28 26 17 44 44 H 1.08998 * 109.47801 * 59.02463 * 28 26 17 45 45 H 1.09002 * 109.48865 * 292.70891 * 29 12 2 46 46 H 1.08996 * 109.48999 * 52.78124 * 29 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.4846 -0.1122 2.3550 6 6 2.8494 -1.1319 3.2472 7 6 2.6056 -2.3163 2.6110 8 6 2.8407 -3.6532 3.1609 9 8 3.2939 -3.7783 4.2826 10 8 2.5546 -4.7459 2.4234 11 8 2.1096 -2.0381 1.3873 12 7 2.0196 -0.6925 -1.1994 13 6 1.4558 -0.0969 -2.4182 14 6 1.8433 -0.9540 -3.6280 15 1 1.3649 -1.9306 -3.5531 16 6 1.3980 -0.2613 -4.9175 17 7 3.3048 -1.1188 -3.6350 18 6 4.0372 -0.8476 -4.7597 19 1 4.8784 -0.1722 -4.7065 20 6 3.6988 -1.4407 -5.9682 21 7 4.0877 -0.8950 -7.1010 22 14 2.6912 -3.0137 -5.9868 23 1 1.2493 -2.6765 -6.0986 24 1 3.0961 -3.8472 -7.1473 25 1 2.9272 -3.7676 -4.7295 26 6 3.9587 -1.5823 -2.4018 27 1 3.6838 -2.6193 -2.2089 28 6 5.4771 -1.4682 -2.5511 29 6 3.4880 -0.7005 -1.2403 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3632 0.5139 0.8901 33 1 2.5508 0.9507 2.5340 34 1 3.2493 -1.0051 4.2425 35 1 2.7270 -5.6068 2.8288 36 1 0.3699 -0.0559 -2.3343 37 1 1.8495 0.9115 -2.5459 38 1 1.5716 -0.9246 -5.7648 39 1 0.3362 -0.0231 -4.8540 40 1 1.9690 0.6573 -5.0523 41 1 3.8509 -1.3093 -7.9455 42 1 5.9584 -1.7961 -1.6297 43 1 5.8091 -2.0963 -3.3777 44 1 5.7456 -0.4311 -2.7522 45 1 3.8534 0.3164 -1.3843 46 1 3.8758 -1.0972 -0.3020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604460678.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:08 Heat of formation + Delta-G solvation = -53.780722 kcal Electronic energy + Delta-G solvation = -28870.926453 eV Core-core repulsion = 24955.792663 eV Total energy + Delta-G solvation = -3915.133790 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.84380 -41.03864 -40.34777 -37.34417 -37.28246 -34.73394 -34.25883 -33.85962 -32.36013 -30.40553 -29.49101 -27.79011 -26.85773 -25.75539 -24.35702 -22.90036 -22.38785 -21.97464 -21.13642 -20.98252 -19.50174 -18.69162 -18.41403 -17.79890 -17.34920 -16.72483 -16.52909 -16.43122 -16.22839 -15.85439 -15.36768 -14.84566 -14.63360 -14.57305 -14.41647 -14.19107 -14.09253 -13.94211 -13.93263 -13.37575 -13.16139 -12.99534 -12.87768 -12.75574 -12.58833 -12.51475 -12.28671 -12.18460 -12.08006 -11.95294 -11.85038 -11.69073 -11.47263 -11.20252 -11.08716 -10.49570 -9.69513 -9.36070 -8.36655 -8.15127 -5.68510 -0.26362 1.18371 1.31270 1.40176 1.40676 1.53289 1.79970 2.21774 2.44263 2.75253 3.08320 3.33525 3.47685 3.84604 4.03173 4.08587 4.12912 4.16009 4.24749 4.42991 4.44502 4.49782 4.53007 4.56081 4.63138 4.73201 4.74733 4.77236 4.82788 4.85900 4.89158 4.94174 4.99964 5.11515 5.25668 5.28399 5.33069 5.35583 5.40998 5.49945 5.63312 5.83569 6.02041 6.08493 6.18520 6.36807 6.82006 7.12596 7.65459 8.25617 9.00997 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016870 B = 0.003950 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.334321 B = 7087.378180 C = 7677.492946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.150 3.850 3 H 0.094 0.906 4 C 0.052 3.948 5 C -0.218 4.218 6 C -0.090 4.090 7 C -0.108 4.108 8 C 0.578 3.422 9 O -0.523 6.523 10 O -0.505 6.505 11 O -0.151 6.151 12 N -0.543 5.543 13 C 0.058 3.942 14 C 0.162 3.838 15 H 0.019 0.981 16 C -0.137 4.137 17 N -0.610 5.610 18 C -0.248 4.248 19 H 0.037 0.963 20 C 0.021 3.979 21 N -0.936 5.936 22 Si 0.918 3.082 23 H -0.263 1.263 24 H -0.310 1.310 25 H -0.279 1.279 26 C 0.162 3.838 27 H 0.017 0.983 28 C -0.122 4.122 29 C 0.066 3.934 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.190 0.810 34 H 0.182 0.818 35 H 0.438 0.562 36 H 0.102 0.898 37 H 0.036 0.964 38 H 0.040 0.960 39 H 0.072 0.928 40 H 0.048 0.952 41 H 0.262 0.738 42 H 0.069 0.931 43 H 0.040 0.960 44 H 0.046 0.954 45 H 0.033 0.967 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.627 1.563 20.558 21.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.042 3.958 3 H 0.111 0.889 4 C -0.002 4.002 5 C -0.237 4.237 6 C -0.110 4.110 7 C -0.158 4.158 8 C 0.424 3.576 9 O -0.415 6.415 10 O -0.319 6.319 11 O -0.046 6.046 12 N -0.268 5.268 13 C -0.070 4.070 14 C 0.057 3.943 15 H 0.037 0.963 16 C -0.194 4.194 17 N -0.337 5.337 18 C -0.378 4.378 19 H 0.055 0.945 20 C -0.177 4.177 21 N -0.579 5.579 22 Si 0.747 3.253 23 H -0.189 1.189 24 H -0.238 1.238 25 H -0.204 1.204 26 C 0.057 3.943 27 H 0.035 0.965 28 C -0.180 4.180 29 C -0.063 4.063 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.207 0.793 34 H 0.199 0.801 35 H 0.301 0.699 36 H 0.120 0.880 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.090 0.910 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.051 0.949 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.821 1.159 20.307 21.792 hybrid contribution 0.407 -0.854 -0.402 1.028 sum -7.413 0.305 19.905 21.243 Atomic orbital electron populations 1.21963 0.90802 1.03222 1.04135 1.20512 0.97446 0.94302 0.83526 0.88871 1.23197 0.99087 0.79926 0.98028 1.21924 1.06716 1.02323 0.92717 1.22254 0.97960 0.89207 1.01561 1.20908 1.14348 0.93396 0.87171 1.18869 0.73442 0.83405 0.81904 1.90971 1.43947 1.86780 1.19830 1.84691 1.79076 1.18733 1.49390 1.84205 1.63466 1.25612 1.31291 1.61901 1.08068 1.54843 1.01960 1.22584 1.00288 0.95721 0.88440 1.20797 0.84107 0.95445 0.93939 0.96347 1.21929 0.99789 1.00772 0.96936 1.44665 1.02139 1.77689 1.09189 1.18174 1.12476 1.21174 0.85980 0.94528 1.26197 0.97644 0.98545 0.95348 1.69970 1.49792 1.40268 0.97836 0.86437 0.79976 0.82933 0.75996 1.18916 1.23791 1.20422 1.20750 0.92822 0.94526 0.86205 0.96483 1.21603 0.94539 1.01290 1.00592 1.22384 0.87125 0.98523 0.98269 0.89935 0.92492 0.89402 0.79294 0.80111 0.69947 0.87984 0.94606 0.94111 0.90965 0.93304 0.92843 0.91253 0.94033 0.93513 0.94878 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.80 71.98 0.63 -1.86 16 2 C 0.15 3.24 2.54 44.17 0.11 3.35 16 3 H 0.09 1.70 8.13 -2.39 -0.02 1.68 16 4 C 0.05 1.16 4.58 24.98 0.11 1.27 16 5 C -0.22 -3.83 10.76 22.07 0.24 -3.59 16 6 C -0.09 -1.76 10.62 22.40 0.24 -1.52 16 7 C -0.11 -2.66 7.18 24.04 0.17 -2.49 16 8 C 0.58 13.82 8.30 69.96 0.58 14.40 16 9 O -0.52 -13.86 17.65 19.43 0.34 -13.52 16 10 O -0.50 -10.14 13.44 -56.72 -0.76 -10.91 16 11 O -0.15 -4.15 10.55 -4.91 -0.05 -4.20 16 12 N -0.54 -16.17 4.48 -874.41 -3.92 -20.09 16 13 C 0.06 1.81 4.61 86.38 0.40 2.20 16 14 C 0.16 6.61 2.45 44.96 0.11 6.72 16 15 H 0.02 0.81 7.40 -2.39 -0.02 0.80 16 16 C -0.14 -5.65 7.83 71.98 0.56 -5.09 16 17 N -0.61 -28.14 2.26 -650.65 -1.47 -29.61 16 18 C -0.25 -13.43 7.23 84.03 0.61 -12.82 16 19 H 0.04 2.22 7.31 -2.91 -0.02 2.20 16 20 C 0.02 1.19 3.95 84.86 0.33 1.53 16 21 N -0.94 -56.04 13.97 21.65 0.30 -55.74 16 22 Si 0.92 46.13 24.67 68.60 1.69 47.82 16 23 H -0.26 -12.43 6.37 99.48 0.63 -11.79 16 24 H -0.31 -15.81 7.11 99.48 0.71 -15.10 16 25 H -0.28 -14.32 7.11 99.48 0.71 -13.61 16 26 C 0.16 6.59 3.66 44.96 0.16 6.76 16 27 H 0.02 0.76 8.14 -2.39 -0.02 0.75 16 28 C -0.12 -4.70 8.19 71.98 0.59 -4.11 16 29 C 0.07 2.17 4.74 86.38 0.41 2.58 16 30 H 0.08 1.29 6.18 -2.39 -0.01 1.28 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.19 2.08 8.06 -2.91 -0.02 2.05 16 34 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 35 H 0.44 3.92 9.11 -74.05 -0.67 3.25 16 36 H 0.10 2.56 5.82 -2.39 -0.01 2.55 16 37 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.04 1.92 3.23 -2.39 -0.01 1.91 16 39 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.05 2.18 7.71 -2.39 -0.02 2.16 16 41 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 42 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.04 1.77 7.69 -2.39 -0.02 1.76 16 44 H 0.05 1.84 7.56 -2.39 -0.02 1.82 16 45 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.07 2.17 6.79 -2.39 -0.02 2.15 16 Total: -1.00 -70.80 361.38 1.65 -69.15 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.25 Total: 9.78 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 5.27 Total: 7.32 kcal Atomic # 7 Polarization: -100.35 SS G_CDS: -5.09 Total: -105.44 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.47 Total: -28.63 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.69 Total: 47.82 kcal Total: -70.80 1.65 -69.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604460678.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.366 kcal (2) G-P(sol) polarization free energy of solvation -70.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds