Wall clock time and date at job start Tue Mar 31 2020 15:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 119.99640 * 2 1 4 4 C 1.50699 * 109.47044 * 269.99614 * 3 2 1 5 5 H 1.08003 * 120.00064 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00423 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00289 * 180.02562 * 6 4 3 8 8 Si 1.86807 * 119.99715 * 0.02562 * 6 4 3 9 9 H 1.48496 * 109.47027 * 89.99575 * 8 6 4 10 10 H 1.48503 * 109.47014 * 209.99556 * 8 6 4 11 11 H 1.48497 * 109.46758 * 329.99665 * 8 6 4 12 12 C 1.39673 * 120.00273 * 179.97438 * 2 1 3 13 13 C 1.38918 * 120.07145 * 0.02562 * 12 2 1 14 14 C 1.38104 * 119.92166 * 179.97438 * 13 12 2 15 15 C 1.38282 * 120.07510 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.92688 * 180.02562 * 15 14 13 17 17 N 1.46901 * 109.47282 * 89.99763 * 16 15 14 18 18 C 1.46905 * 110.99640 * 180.02562 * 17 16 15 19 19 C 1.52997 * 109.47161 * 60.00200 * 18 17 16 20 20 C 1.52997 * 109.47150 * 299.99691 * 18 17 16 21 21 O 1.42898 * 109.47319 * 305.00557 * 20 18 17 22 22 C 1.50705 * 109.46471 * 179.97438 * 18 17 16 23 23 O 1.20827 * 119.99476 * 144.99598 * 22 18 17 24 24 O 1.34226 * 120.00559 * 324.99870 * 22 18 17 25 25 C 1.38290 * 120.15354 * 0.26923 * 15 14 13 26 26 C 1.38105 * 120.06978 * 359.45789 * 25 15 14 27 27 H 1.09004 * 109.47039 * 269.99855 * 1 2 3 28 28 H 1.08999 * 109.47362 * 30.00096 * 1 2 3 29 29 H 1.09006 * 109.46978 * 150.00532 * 1 2 3 30 30 H 1.08999 * 109.47431 * 29.99905 * 3 2 1 31 31 H 1.09002 * 109.47026 * 149.99988 * 3 2 1 32 32 H 0.96999 * 119.99480 * 180.02562 * 7 6 4 33 33 H 1.08000 * 120.03884 * 359.95241 * 13 12 2 34 34 H 1.07997 * 119.96340 * 179.97438 * 14 13 12 35 35 H 1.08999 * 109.47076 * 329.99910 * 16 15 14 36 36 H 1.08997 * 109.47080 * 210.00162 * 16 15 14 37 37 H 1.00899 * 110.99807 * 303.95290 * 17 16 15 38 38 H 1.09002 * 109.47016 * 299.99449 * 19 18 17 39 39 H 1.09000 * 109.47400 * 59.99850 * 19 18 17 40 40 H 1.09004 * 109.46881 * 180.02562 * 19 18 17 41 41 H 1.09002 * 109.47153 * 185.00250 * 20 18 17 42 42 H 1.09001 * 109.46832 * 65.00441 * 20 18 17 43 43 H 0.96701 * 113.99881 * 180.02562 * 21 20 18 44 44 H 0.96693 * 116.99914 * 180.02562 * 24 22 18 45 45 H 1.07995 * 119.96239 * 179.70038 * 25 15 14 46 46 H 1.07995 * 120.03810 * 180.27015 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1259 2.8780 -1.6729 7 7 3.3447 3.2578 -2.9128 8 14 3.7328 3.9294 -0.2530 9 1 5.1063 3.5084 0.1229 10 1 3.7476 5.3561 -0.6647 11 1 2.8268 3.7594 0.9112 12 6 2.1635 -1.2096 0.0005 13 6 1.4704 -2.4135 0.0005 14 6 2.1641 -3.6077 0.0005 15 6 3.5470 -3.6058 0.0000 16 6 4.3006 -4.9109 -0.0006 17 7 4.5449 -5.3347 -1.3857 18 6 5.2787 -6.6067 -1.4254 19 6 4.4611 -7.6894 -0.7181 20 6 6.6253 -6.4409 -0.7184 21 8 7.3406 -5.3519 -1.3053 22 6 5.5097 -7.0088 -2.8593 23 8 6.5299 -7.5763 -3.1707 24 8 4.5822 -6.7364 -3.7906 25 6 4.2400 -2.4091 0.0051 26 6 3.5526 -1.2114 -0.0006 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8901 -0.5138 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1385 0.5138 32 1 3.8215 4.0837 -3.0900 33 1 0.3904 -2.4157 0.0009 34 1 1.6261 -4.5441 0.0010 35 1 3.7118 -5.6707 0.5133 36 1 5.2531 -4.7806 0.5129 37 1 3.6802 -5.4002 -1.9017 38 1 4.2937 -7.3988 0.3191 39 1 3.5018 -7.8075 -1.2218 40 1 5.0059 -8.6331 -0.7471 41 1 7.2067 -7.3568 -0.8246 42 1 6.4577 -6.2375 0.3393 43 1 8.2060 -5.1889 -0.9058 44 1 4.7750 -7.0140 -4.6965 45 1 5.3199 -2.4113 0.0095 46 1 4.0943 -0.2771 -0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606106019.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:52 Heat of formation + Delta-G solvation = -93.034070 kcal Electronic energy + Delta-G solvation = -27347.376525 eV Core-core repulsion = 23430.540582 eV Total energy + Delta-G solvation = -3916.835943 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.79325 -39.14438 -37.97453 -36.43339 -36.00528 -35.28948 -32.68202 -31.64676 -30.54127 -29.02442 -28.27409 -26.69706 -26.14291 -24.82353 -23.42892 -21.96998 -21.42084 -20.04716 -19.56588 -18.23361 -17.59636 -17.48090 -16.92320 -16.56019 -15.73103 -15.49712 -15.27235 -14.86204 -14.43509 -14.30214 -14.11399 -13.98613 -13.62740 -13.47261 -13.21511 -13.08353 -12.92558 -12.67749 -12.59323 -12.39932 -11.85590 -11.83487 -11.67889 -11.59924 -11.54564 -11.44583 -11.00720 -10.71707 -10.60748 -10.56921 -10.24127 -10.14618 -10.06157 -9.57413 -8.92604 -8.64309 -8.49183 -8.30291 -6.42265 -6.12699 -4.12833 1.98845 2.07383 2.19747 2.80728 3.22960 3.30478 3.31112 3.73926 4.02056 4.07998 4.33637 4.40187 4.57151 4.79421 4.96170 5.00308 5.11785 5.14948 5.17452 5.22020 5.25564 5.42360 5.49240 5.53405 5.65560 5.74816 5.79246 5.96027 6.02144 6.22025 6.31451 6.33622 6.37957 6.54279 6.71004 6.75292 6.78818 6.99570 7.05981 7.22444 7.31809 7.52445 7.53641 7.55246 7.75657 8.04604 8.33893 8.52423 8.95141 9.46930 11.00375 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.015702 B = 0.002900 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.749305 B = 9652.122237 C =10324.616546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.611 5.611 3 C 0.221 3.779 4 C -0.535 4.535 5 H 0.077 0.923 6 C 0.073 3.927 7 N -0.894 5.894 8 Si 0.872 3.128 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.243 3.757 13 C -0.219 4.219 14 C -0.067 4.067 15 C -0.171 4.171 16 C 0.113 3.887 17 N -0.654 5.654 18 C 0.127 3.873 19 C -0.184 4.184 20 C 0.095 3.905 21 O -0.548 6.548 22 C 0.505 3.495 23 O -0.514 6.514 24 O -0.508 6.508 25 C -0.046 4.046 26 C -0.189 4.189 27 H 0.036 0.964 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.265 0.735 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.034 0.966 36 H 0.076 0.924 37 H 0.353 0.647 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.377 0.623 44 H 0.410 0.590 45 H 0.114 0.886 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.307 -21.489 7.462 22.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.317 5.317 3 C 0.099 3.901 4 C -0.574 4.574 5 H 0.095 0.905 6 C -0.130 4.130 7 N -0.532 5.532 8 Si 0.699 3.301 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.136 3.864 13 C -0.242 4.242 14 C -0.086 4.086 15 C -0.173 4.173 16 C -0.015 4.015 17 N -0.288 5.288 18 C 0.033 3.967 19 C -0.243 4.243 20 C 0.017 3.983 21 O -0.352 6.352 22 C 0.346 3.654 23 O -0.401 6.401 24 O -0.320 6.320 25 C -0.065 4.065 26 C -0.211 4.211 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.132 0.868 34 H 0.124 0.876 35 H 0.052 0.948 36 H 0.094 0.906 37 H 0.174 0.826 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.224 0.776 44 H 0.268 0.732 45 H 0.132 0.868 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.488 -20.732 7.208 22.000 hybrid contribution 0.245 -0.076 0.403 0.478 sum 1.733 -20.808 7.610 22.223 Atomic orbital electron populations 1.21494 0.81034 1.02348 0.99660 1.46726 1.04411 1.03975 1.76550 1.19657 0.91902 0.80668 0.97825 1.21478 1.37020 1.07254 0.91617 0.90540 1.24902 0.95401 0.97249 0.95455 1.69903 1.41173 1.23469 1.18649 0.86914 0.79951 0.80190 0.83056 1.19869 1.20975 1.19051 1.17933 0.91483 0.85855 0.91116 1.20508 0.99012 0.91286 1.13386 1.20511 0.93261 0.96560 0.98261 1.19101 0.93006 0.93704 1.11529 1.20792 0.98932 0.93617 0.88137 1.60662 1.27527 1.25700 1.14910 1.20809 0.96186 0.91460 0.88212 1.22525 1.00736 0.98647 1.02404 1.22045 0.90312 0.90640 0.95342 1.86649 1.34363 1.51717 1.62457 1.23008 0.80163 0.74196 0.88050 1.90697 1.27739 1.39891 1.81801 1.84521 1.48614 1.76399 1.22430 1.20656 0.98907 0.91227 0.95714 1.20842 0.92577 0.98774 1.08927 0.94563 0.91265 0.92390 0.95479 0.95483 0.92506 0.86813 0.87584 0.94781 0.90560 0.82601 0.89832 0.90671 0.91065 0.92353 0.92257 0.77621 0.73166 0.86804 0.85415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.67 10.19 59.85 0.61 2.28 16 2 N -0.61 -12.68 2.99 -180.99 -0.54 -13.22 16 3 C 0.22 5.18 3.98 -5.20 -0.02 5.16 16 4 C -0.54 -14.93 9.94 -34.44 -0.34 -15.27 16 5 H 0.08 2.40 8.06 -52.48 -0.42 1.98 16 6 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 7 N -0.89 -27.13 13.96 55.43 0.77 -26.35 16 8 Si 0.87 20.75 27.47 -169.99 -4.67 16.08 16 9 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 12 C 0.24 4.78 6.55 -83.79 -0.55 4.23 16 13 C -0.22 -3.65 9.21 -39.38 -0.36 -4.01 16 14 C -0.07 -0.97 9.69 -39.61 -0.38 -1.35 16 15 C -0.17 -2.50 5.40 -104.59 -0.56 -3.07 16 16 C 0.11 1.28 5.02 -4.97 -0.02 1.26 16 17 N -0.65 -7.84 5.78 -102.39 -0.59 -8.44 16 18 C 0.13 1.30 0.71 -132.75 -0.09 1.20 16 19 C -0.18 -1.33 8.21 37.16 0.31 -1.03 16 20 C 0.10 0.92 5.04 37.16 0.19 1.11 16 21 O -0.55 -6.44 13.17 -35.23 -0.46 -6.90 16 22 C 0.50 6.01 6.95 36.01 0.25 6.26 16 23 O -0.51 -7.32 16.75 -18.76 -0.31 -7.64 16 24 O -0.51 -5.10 12.68 -39.25 -0.50 -5.60 16 25 C -0.05 -0.77 9.69 -39.61 -0.38 -1.16 16 26 C -0.19 -3.74 9.21 -39.38 -0.36 -4.10 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 29 H 0.06 0.88 6.20 -51.93 -0.32 0.56 16 30 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 31 H 0.03 0.63 5.63 -51.93 -0.29 0.34 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.11 1.70 6.14 -52.49 -0.32 1.38 16 34 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.03 0.32 6.24 -51.93 -0.32 0.00 16 36 H 0.08 0.85 6.36 -51.93 -0.33 0.52 16 37 H 0.35 4.28 8.16 -39.29 -0.32 3.96 16 38 H 0.08 0.52 6.40 -51.93 -0.33 0.18 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.53 7.69 -51.93 -0.40 0.13 16 42 H 0.06 0.46 6.68 -51.93 -0.35 0.11 16 43 H 0.38 2.71 9.12 45.56 0.42 3.13 16 44 H 0.41 2.43 9.10 45.56 0.41 2.84 16 45 H 0.11 1.80 8.06 -52.49 -0.42 1.37 16 46 H 0.13 2.74 6.14 -52.49 -0.32 2.42 16 LS Contribution 374.77 15.07 5.65 5.65 Total: -1.00 -35.23 374.77 -7.47 -42.70 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -4.98 Total: 10.24 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -1.83 Total: -6.52 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: -0.36 Total: -48.01 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -1.28 Total: -20.14 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.08 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.23 -7.47 -42.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606106019.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.336 kcal (2) G-P(sol) polarization free energy of solvation -35.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds