Wall clock time and date at job start Tue Mar 31 2020 15:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 119.99640 * 2 1 4 4 C 1.50699 * 109.47044 * 269.99614 * 3 2 1 5 5 H 1.08003 * 120.00064 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00423 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00289 * 180.02562 * 6 4 3 8 8 Si 1.86807 * 119.99715 * 0.02562 * 6 4 3 9 9 H 1.48496 * 109.47027 * 89.99575 * 8 6 4 10 10 H 1.48503 * 109.47014 * 209.99556 * 8 6 4 11 11 H 1.48497 * 109.46758 * 329.99665 * 8 6 4 12 12 C 1.39673 * 120.00273 * 179.97438 * 2 1 3 13 13 C 1.38918 * 120.07145 * 0.02562 * 12 2 1 14 14 C 1.38104 * 119.92166 * 179.97438 * 13 12 2 15 15 C 1.38282 * 120.07510 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.92688 * 180.02562 * 15 14 13 17 17 N 1.46901 * 109.47282 * 89.99763 * 16 15 14 18 18 C 1.46905 * 110.99640 * 180.02562 * 17 16 15 19 19 C 1.52997 * 109.47161 * 60.00200 * 18 17 16 20 20 C 1.52997 * 109.47150 * 299.99691 * 18 17 16 21 21 O 1.42898 * 109.47319 * 305.00557 * 20 18 17 22 22 C 1.50705 * 109.46471 * 179.97438 * 18 17 16 23 23 O 1.20827 * 119.99476 * 144.99598 * 22 18 17 24 24 O 1.34226 * 120.00559 * 324.99870 * 22 18 17 25 25 C 1.38290 * 120.15354 * 0.26923 * 15 14 13 26 26 C 1.38105 * 120.06978 * 359.45789 * 25 15 14 27 27 H 1.09004 * 109.47039 * 269.99855 * 1 2 3 28 28 H 1.08999 * 109.47362 * 30.00096 * 1 2 3 29 29 H 1.09006 * 109.46978 * 150.00532 * 1 2 3 30 30 H 1.08999 * 109.47431 * 29.99905 * 3 2 1 31 31 H 1.09002 * 109.47026 * 149.99988 * 3 2 1 32 32 H 0.96999 * 119.99480 * 180.02562 * 7 6 4 33 33 H 1.08000 * 120.03884 * 359.95241 * 13 12 2 34 34 H 1.07997 * 119.96340 * 179.97438 * 14 13 12 35 35 H 1.08999 * 109.47076 * 329.99910 * 16 15 14 36 36 H 1.08997 * 109.47080 * 210.00162 * 16 15 14 37 37 H 1.00899 * 110.99807 * 303.95290 * 17 16 15 38 38 H 1.09002 * 109.47016 * 299.99449 * 19 18 17 39 39 H 1.09000 * 109.47400 * 59.99850 * 19 18 17 40 40 H 1.09004 * 109.46881 * 180.02562 * 19 18 17 41 41 H 1.09002 * 109.47153 * 185.00250 * 20 18 17 42 42 H 1.09001 * 109.46832 * 65.00441 * 20 18 17 43 43 H 0.96701 * 113.99881 * 180.02562 * 21 20 18 44 44 H 0.96693 * 116.99914 * 180.02562 * 24 22 18 45 45 H 1.07995 * 119.96239 * 179.70038 * 25 15 14 46 46 H 1.07995 * 120.03810 * 180.27015 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1259 2.8780 -1.6729 7 7 3.3447 3.2578 -2.9128 8 14 3.7328 3.9294 -0.2530 9 1 5.1063 3.5084 0.1229 10 1 3.7476 5.3561 -0.6647 11 1 2.8268 3.7594 0.9112 12 6 2.1635 -1.2096 0.0005 13 6 1.4704 -2.4135 0.0005 14 6 2.1641 -3.6077 0.0005 15 6 3.5470 -3.6058 0.0000 16 6 4.3006 -4.9109 -0.0006 17 7 4.5449 -5.3347 -1.3857 18 6 5.2787 -6.6067 -1.4254 19 6 4.4611 -7.6894 -0.7181 20 6 6.6253 -6.4409 -0.7184 21 8 7.3406 -5.3519 -1.3053 22 6 5.5097 -7.0088 -2.8593 23 8 6.5299 -7.5763 -3.1707 24 8 4.5822 -6.7364 -3.7906 25 6 4.2400 -2.4091 0.0051 26 6 3.5526 -1.2114 -0.0006 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8901 -0.5138 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1385 0.5138 32 1 3.8215 4.0837 -3.0900 33 1 0.3904 -2.4157 0.0009 34 1 1.6261 -4.5441 0.0010 35 1 3.7118 -5.6707 0.5133 36 1 5.2531 -4.7806 0.5129 37 1 3.6802 -5.4002 -1.9017 38 1 4.2937 -7.3988 0.3191 39 1 3.5018 -7.8075 -1.2218 40 1 5.0059 -8.6331 -0.7471 41 1 7.2067 -7.3568 -0.8246 42 1 6.4577 -6.2375 0.3393 43 1 8.2060 -5.1889 -0.9058 44 1 4.7750 -7.0140 -4.6965 45 1 5.3199 -2.4113 0.0095 46 1 4.0943 -0.2771 -0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606106019.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:51 Heat of formation + Delta-G solvation = -121.494562 kcal Electronic energy + Delta-G solvation = -27348.610664 eV Core-core repulsion = 23430.540582 eV Total energy + Delta-G solvation = -3918.070082 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.64705 -40.44284 -38.88004 -37.51413 -37.05211 -36.30537 -34.72551 -32.73296 -31.94428 -30.39087 -29.75295 -27.45394 -27.15225 -26.12497 -24.74962 -23.30761 -22.88395 -21.05088 -20.72586 -19.10377 -19.07543 -18.51616 -18.30770 -17.92046 -16.87720 -16.59651 -16.28935 -16.09218 -15.88992 -15.48517 -15.19060 -15.01703 -14.90585 -14.70885 -14.32984 -14.27466 -14.17309 -14.13127 -13.41870 -13.35636 -13.29168 -13.15599 -12.99714 -12.69664 -12.57282 -12.55042 -12.42172 -12.38643 -12.04577 -11.82381 -11.71834 -11.47093 -11.41238 -10.89731 -10.81939 -10.38682 -9.63354 -9.31672 -8.32976 -7.89062 -6.38385 0.74618 0.82964 1.18201 1.34241 1.35509 1.45952 2.07816 2.30892 2.56275 2.90985 3.01002 3.20680 3.43517 3.71612 4.07491 4.08620 4.19607 4.24550 4.33138 4.40432 4.43793 4.47310 4.51619 4.63381 4.64676 4.74167 4.77190 4.80419 4.82364 4.86634 4.93250 5.06743 5.10821 5.14704 5.33631 5.46484 5.56776 5.63218 5.65841 5.92264 6.00791 6.10852 6.26544 6.40121 6.60925 6.71098 6.89914 6.94435 6.97691 7.27189 8.84604 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.015702 B = 0.002900 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.749305 B = 9652.122237 C =10324.616546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.629 5.629 3 C 0.232 3.768 4 C -0.537 4.537 5 H 0.023 0.977 6 C 0.011 3.989 7 N -0.947 5.947 8 Si 0.947 3.053 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.242 1.242 12 C 0.211 3.789 13 C -0.217 4.217 14 C -0.059 4.059 15 C -0.157 4.157 16 C 0.118 3.882 17 N -0.673 5.673 18 C 0.124 3.876 19 C -0.178 4.178 20 C 0.091 3.909 21 O -0.578 6.578 22 C 0.500 3.500 23 O -0.546 6.546 24 O -0.510 6.510 25 C -0.054 4.054 26 C -0.220 4.220 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.036 0.964 31 H 0.028 0.972 32 H 0.268 0.732 33 H 0.133 0.867 34 H 0.148 0.852 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.352 0.648 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.083 0.917 43 H 0.392 0.608 44 H 0.424 0.576 45 H 0.118 0.882 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.608 -23.734 9.984 25.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.337 5.337 3 C 0.110 3.890 4 C -0.576 4.576 5 H 0.042 0.958 6 C -0.187 4.187 7 N -0.587 5.587 8 Si 0.770 3.230 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.165 1.165 12 C 0.107 3.893 13 C -0.240 4.240 14 C -0.078 4.078 15 C -0.160 4.160 16 C -0.009 4.009 17 N -0.307 5.307 18 C 0.032 3.968 19 C -0.237 4.237 20 C 0.012 3.988 21 O -0.386 6.386 22 C 0.343 3.657 23 O -0.435 6.435 24 O -0.323 6.323 25 C -0.074 4.074 26 C -0.243 4.243 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.151 0.849 34 H 0.165 0.835 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.172 0.828 38 H 0.119 0.881 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.101 0.899 43 H 0.242 0.758 44 H 0.286 0.714 45 H 0.136 0.864 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.772 -23.026 9.739 25.012 hybrid contribution 0.473 0.441 -0.517 0.828 sum 1.245 -22.584 9.222 24.426 Atomic orbital electron populations 1.21636 0.79115 1.02479 1.01330 1.46697 1.05641 1.03317 1.78086 1.19315 0.92578 0.82523 0.94624 1.21684 1.36494 1.06651 0.92735 0.95840 1.25896 0.95490 0.98824 0.98521 1.70074 1.42729 1.24413 1.21457 0.85720 0.79838 0.77755 0.79704 1.19118 1.20525 1.16502 1.18230 0.91588 0.86577 0.92901 1.20814 1.00116 0.90763 1.12263 1.20963 0.93295 0.97404 0.96104 1.19483 0.93525 0.94295 1.08688 1.20789 0.99310 0.92457 0.88360 1.60549 1.27665 1.27303 1.15173 1.20977 0.96718 0.91627 0.87525 1.22509 1.00430 0.97843 1.02885 1.22226 0.89941 0.90263 0.96341 1.86597 1.35738 1.52580 1.63651 1.23480 0.79747 0.73462 0.88990 1.90681 1.28923 1.41497 1.82423 1.84497 1.48184 1.76078 1.23492 1.20808 0.99318 0.91386 0.95865 1.20797 0.93201 0.98690 1.11619 0.91920 0.92740 0.90710 0.94636 0.95388 0.92344 0.84879 0.83464 0.91502 0.90078 0.82798 0.88086 0.90108 0.90287 0.92027 0.89934 0.75846 0.71429 0.86366 0.88548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.22 10.19 127.77 1.30 4.52 16 2 N -0.63 -26.37 2.99 -726.54 -2.17 -28.54 16 3 C 0.23 11.12 3.98 85.63 0.34 11.47 16 4 C -0.54 -31.38 9.94 25.60 0.25 -31.13 16 5 H 0.02 1.57 8.06 -2.91 -0.02 1.54 16 6 C 0.01 0.62 5.47 84.65 0.46 1.08 16 7 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 8 Si 0.95 43.49 27.47 68.60 1.88 45.38 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.24 -10.08 6.54 99.48 0.65 -9.43 16 12 C 0.21 8.33 6.55 38.22 0.25 8.58 16 13 C -0.22 -6.76 9.21 22.40 0.21 -6.55 16 14 C -0.06 -1.50 9.69 22.25 0.22 -1.28 16 15 C -0.16 -4.20 5.40 -19.84 -0.11 -4.31 16 16 C 0.12 2.25 5.02 85.56 0.43 2.68 16 17 N -0.67 -14.33 5.78 -477.86 -2.76 -17.09 16 18 C 0.12 2.23 0.71 2.78 0.00 2.24 16 19 C -0.18 -1.91 8.21 71.98 0.59 -1.32 16 20 C 0.09 1.54 5.04 71.98 0.36 1.90 16 21 O -0.58 -12.95 13.17 -148.98 -1.96 -14.92 16 22 C 0.50 11.25 6.95 71.24 0.50 11.74 16 23 O -0.55 -15.17 16.75 21.96 0.37 -14.81 16 24 O -0.51 -9.56 12.68 -51.37 -0.65 -10.21 16 25 C -0.05 -1.83 9.69 22.25 0.22 -1.62 16 26 C -0.22 -8.99 9.21 22.40 0.21 -8.78 16 27 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 28 H 0.05 1.92 8.07 -2.39 -0.02 1.90 16 29 H 0.07 2.16 6.20 -2.38 -0.01 2.15 16 30 H 0.04 1.63 7.13 -2.39 -0.02 1.61 16 31 H 0.03 1.34 5.63 -2.39 -0.01 1.33 16 32 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 33 H 0.13 3.56 6.14 -2.91 -0.02 3.54 16 34 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 35 H 0.07 0.88 6.24 -2.39 -0.01 0.86 16 36 H 0.08 1.51 6.36 -2.39 -0.02 1.49 16 37 H 0.35 7.54 8.16 -89.69 -0.73 6.80 16 38 H 0.10 0.74 6.40 -2.39 -0.02 0.72 16 39 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.06 1.00 7.69 -2.39 -0.02 0.98 16 42 H 0.08 0.99 6.68 -2.39 -0.02 0.97 16 43 H 0.39 5.32 9.12 -74.06 -0.68 4.65 16 44 H 0.42 4.64 9.10 -74.06 -0.67 3.97 16 45 H 0.12 3.74 8.06 -2.91 -0.02 3.72 16 46 H 0.10 4.42 6.14 -2.91 -0.02 4.40 16 Total: -1.00 -80.77 374.77 -0.86 -81.64 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: -1.10 Total: 28.95 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 5.23 Total: -10.77 kcal Atomic # 7 Polarization: -100.63 SS G_CDS: -4.63 Total: -105.26 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -2.25 Total: -39.93 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.88 Total: 45.38 kcal Total: -80.77 -0.86 -81.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606106019.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.859 kcal (2) G-P(sol) polarization free energy of solvation -80.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds