Wall clock time and date at job start Tue Mar 31 2020 15:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.52210 * 2 1 4 4 C 1.53036 * 109.50196 * 239.91930 * 2 1 3 5 5 C 1.53042 * 109.53872 * 178.68442 * 4 2 1 6 6 C 1.53193 * 109.31447 * 61.36302 * 5 4 2 7 7 N 1.46924 * 108.77477 * 305.36583 * 6 5 4 8 8 C 1.34778 * 120.62955 * 233.63143 * 7 6 5 9 9 O 1.21280 * 120.00042 * 186.32886 * 8 7 6 10 10 C 1.50698 * 120.00297 * 6.33072 * 8 7 6 11 11 C 1.52996 * 109.47270 * 180.02562 * 10 8 7 12 12 F 1.39896 * 109.47337 * 59.99646 * 11 10 8 13 13 F 1.39907 * 109.47049 * 179.97438 * 11 10 8 14 14 F 1.39899 * 109.47144 * 299.99388 * 11 10 8 15 15 C 1.46929 * 118.73973 * 53.60934 * 7 6 5 16 16 H 1.08997 * 109.58767 * 66.31802 * 15 7 6 17 17 C 1.53002 * 109.58562 * 186.60511 * 15 7 6 18 18 C 1.53004 * 109.47231 * 66.19744 * 17 15 7 19 19 N 1.46492 * 109.47258 * 175.73762 * 18 17 15 20 20 C 1.36943 * 120.00464 * 179.72411 * 19 18 17 21 21 H 1.08001 * 119.99361 * 0.27350 * 20 19 18 22 22 C 1.38812 * 120.00398 * 180.27471 * 20 19 18 23 23 N 1.31617 * 119.99526 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00044 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47134 * 89.99819 * 24 22 20 26 26 H 1.48496 * 109.47109 * 210.00115 * 24 22 20 27 27 H 1.48507 * 109.47035 * 329.99862 * 24 22 20 28 28 H 1.08999 * 109.47709 * 299.92452 * 1 2 3 29 29 H 1.09004 * 109.47066 * 59.92604 * 1 2 3 30 30 H 1.09003 * 109.47256 * 179.91577 * 1 2 3 31 31 H 1.08998 * 109.46042 * 58.66039 * 4 2 1 32 32 H 1.09000 * 109.44475 * 298.69587 * 4 2 1 33 33 H 1.09004 * 109.49595 * 301.40718 * 5 4 2 34 34 H 1.08997 * 109.49588 * 181.31621 * 5 4 2 35 35 H 1.09000 * 109.58807 * 185.57973 * 6 5 4 36 36 H 1.09000 * 109.58583 * 65.15326 * 6 5 4 37 37 H 1.09010 * 109.46569 * 300.00066 * 10 8 7 38 38 H 1.09000 * 109.46957 * 59.99138 * 10 8 7 39 39 H 1.08995 * 109.47281 * 306.19292 * 17 15 7 40 40 H 1.08999 * 109.46765 * 186.19404 * 17 15 7 41 41 H 1.09003 * 109.47118 * 55.73253 * 18 17 15 42 42 H 1.09004 * 109.46843 * 295.73862 * 18 17 15 43 43 H 0.97004 * 119.99955 * 359.97438 * 19 18 17 44 44 H 0.97010 * 119.99665 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0408 -0.7230 -1.2483 5 6 3.5709 -0.6949 -1.2658 6 6 4.1053 -1.4266 -0.0306 7 7 3.5045 -0.8290 1.1697 8 6 4.2810 -0.3854 2.1781 9 8 3.7735 -0.0003 3.2100 10 6 5.7800 -0.3678 2.0233 11 6 6.4185 0.1761 3.3029 12 9 6.0707 -0.6431 4.3822 13 9 7.8101 0.1918 3.1593 14 9 5.9587 1.4764 3.5372 15 6 2.0412 -0.7237 1.2497 16 1 1.6053 -1.7215 1.3006 17 6 1.6516 0.0706 2.4979 18 6 2.1267 1.5175 2.3506 19 7 1.6656 2.3022 3.4985 20 6 1.9774 3.6326 3.5883 21 1 2.5595 4.1044 2.8105 22 6 1.5454 4.3748 4.6789 23 7 0.8356 3.7999 5.6265 24 14 1.9714 6.1894 4.8015 25 1 0.9072 6.9929 4.1481 26 1 2.0774 6.5774 6.2310 27 1 3.2683 6.4404 4.1230 28 1 -0.3634 0.5126 0.8906 29 1 -0.3633 0.5150 -0.8894 30 1 -0.3634 -1.0277 -0.0015 31 1 1.6582 -0.2245 -2.1388 32 1 1.6968 -1.7572 -1.2349 33 1 3.9159 0.3390 -1.2540 34 1 3.9335 -1.1896 -2.1669 35 1 5.1896 -1.3244 0.0140 36 1 3.8376 -2.4817 -0.0865 37 1 6.1382 -1.3811 1.8411 38 1 6.0509 0.2701 1.1820 39 1 2.1190 -0.3778 3.3746 40 1 0.5681 0.0542 2.6155 41 1 1.7193 1.9421 1.4330 42 1 3.2157 1.5399 2.3090 43 1 1.1425 1.8785 4.1970 44 1 0.5333 4.3186 6.3885 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691718610.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:12 Heat of formation + Delta-G solvation = -152.780159 kcal Electronic energy + Delta-G solvation = -30040.496924 eV Core-core repulsion = 25579.213456 eV Total energy + Delta-G solvation = -4461.283468 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 16.34 seconds Orbital eigenvalues (eV) -49.88629 -47.46058 -47.24292 -40.91766 -37.78168 -35.32089 -33.79467 -32.80842 -31.68706 -30.76600 -28.36131 -26.52224 -25.43083 -23.85370 -23.18673 -22.06844 -21.32334 -20.23985 -19.07584 -18.33006 -18.24482 -17.29070 -16.94073 -16.54767 -15.83445 -15.61680 -14.89098 -14.74048 -14.38508 -14.34290 -14.13572 -13.95719 -13.75821 -13.55016 -13.51158 -13.42676 -13.40090 -13.14812 -12.98995 -12.68192 -12.53570 -12.18678 -11.96198 -11.90877 -11.65171 -11.38609 -11.11331 -10.99623 -10.82924 -10.66199 -10.52967 -10.20882 -10.19162 -9.79971 -9.49779 -8.76718 -8.72388 -8.37719 -6.61113 -5.55804 -2.80657 2.50952 2.60262 3.03199 3.54811 3.59353 3.61809 3.78695 3.98285 4.11404 4.46975 4.60763 4.67244 4.72449 4.77311 4.87904 4.94932 4.99453 5.11029 5.15964 5.35329 5.48287 5.54218 5.59648 5.63852 5.73071 5.76038 5.82131 5.95504 6.00143 6.13496 6.28380 6.32745 6.46832 6.54290 6.65087 6.75192 7.14118 7.28489 7.39700 7.86926 8.23104 8.64141 9.74339 10.38749 10.72730 11.67904 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.009450 B = 0.005899 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2962.325315 B = 4745.546103 C = 6886.081342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 H 0.088 0.912 4 C -0.114 4.114 5 C -0.137 4.137 6 C 0.106 3.894 7 N -0.606 5.606 8 C 0.505 3.495 9 O -0.465 6.465 10 C -0.197 4.197 11 C 0.469 3.531 12 F -0.174 7.174 13 F -0.189 7.189 14 F -0.161 7.161 15 C 0.163 3.837 16 H 0.069 0.931 17 C -0.143 4.143 18 C 0.164 3.836 19 N -0.725 5.725 20 C -0.224 4.224 21 H 0.064 0.936 22 C -0.019 4.019 23 N -0.936 5.936 24 Si 0.902 3.098 25 H -0.292 1.292 26 H -0.292 1.292 27 H -0.284 1.284 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.110 0.890 40 H 0.057 0.943 41 H 0.003 0.997 42 H 0.026 0.974 43 H 0.381 0.619 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.950 -15.993 -16.274 24.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.129 4.129 3 H 0.106 0.894 4 C -0.152 4.152 5 C -0.175 4.175 6 C -0.017 4.017 7 N -0.342 5.342 8 C 0.290 3.710 9 O -0.338 6.338 10 C -0.238 4.238 11 C 0.414 3.586 12 F -0.156 7.156 13 F -0.171 7.171 14 F -0.142 7.142 15 C 0.061 3.939 16 H 0.087 0.913 17 C -0.180 4.180 18 C 0.037 3.963 19 N -0.368 5.368 20 C -0.355 4.355 21 H 0.082 0.918 22 C -0.214 4.214 23 N -0.586 5.586 24 Si 0.734 3.266 25 H -0.220 1.220 26 H -0.219 1.219 27 H -0.210 1.210 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.128 0.872 40 H 0.076 0.924 41 H 0.021 0.979 42 H 0.044 0.956 43 H 0.214 0.786 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.763 -15.602 -15.689 23.799 hybrid contribution 0.270 0.982 0.269 1.053 sum 9.033 -14.620 -15.420 23.090 Atomic orbital electron populations 1.21784 0.94253 1.01501 1.02700 1.21683 0.96408 1.01116 0.93738 0.89422 1.21597 0.94713 1.00699 0.98172 1.21936 0.96776 1.01541 0.97244 1.21763 0.97944 0.97306 0.84692 1.47907 1.06971 1.61555 1.17736 1.19666 0.87229 0.79309 0.84797 1.90982 1.72280 1.43083 1.27419 1.23062 0.96956 1.06519 0.97249 1.19745 0.75689 0.77195 0.85924 1.93216 1.91711 1.72296 1.58331 1.93172 1.31472 1.96523 1.95938 1.93328 1.88216 1.37505 1.95199 1.21334 0.77525 0.98772 0.96306 0.91326 1.22495 1.00300 0.97632 0.97608 1.20912 0.96739 0.88411 0.90251 1.42249 1.64118 1.07124 1.23270 1.19191 1.26613 0.85893 1.03838 0.91754 1.24674 1.01504 0.97863 0.97384 1.69669 1.42250 1.35023 1.11612 0.86245 0.77757 0.85919 0.76699 1.22017 1.21893 1.20965 0.91325 0.92675 0.93021 0.91704 0.92011 0.91210 0.90822 0.90095 0.91107 0.85175 0.84963 0.87214 0.92450 0.97943 0.95595 0.78551 0.93831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 8.97 37.15 0.33 -1.33 16 2 C -0.11 -1.29 1.98 -90.50 -0.18 -1.47 16 3 H 0.09 1.25 5.93 -51.93 -0.31 0.95 16 4 C -0.11 -0.96 5.17 -26.69 -0.14 -1.10 16 5 C -0.14 -0.97 6.08 -26.61 -0.16 -1.13 16 6 C 0.11 0.76 6.35 -3.71 -0.02 0.74 16 7 N -0.61 -7.00 2.94 -165.22 -0.49 -7.48 16 8 C 0.50 7.11 6.07 -10.99 -0.07 7.04 16 9 O -0.47 -8.97 8.71 5.56 0.05 -8.92 16 10 C -0.20 -2.01 4.11 -27.89 -0.11 -2.13 16 11 C 0.47 6.63 2.89 37.16 0.11 6.74 16 12 F -0.17 -2.80 16.40 2.25 0.04 -2.76 16 13 F -0.19 -2.39 17.32 2.25 0.04 -2.35 16 14 F -0.16 -3.00 16.40 2.25 0.04 -2.96 16 15 C 0.16 2.12 2.66 -67.59 -0.18 1.94 16 16 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 17 C -0.14 -2.56 4.19 -26.73 -0.11 -2.67 16 18 C 0.16 3.61 4.94 -4.04 -0.02 3.59 16 19 N -0.72 -20.15 5.60 -59.91 -0.34 -20.49 16 20 C -0.22 -6.78 9.99 -15.06 -0.15 -6.93 16 21 H 0.06 1.91 7.83 -52.49 -0.41 1.50 16 22 C -0.02 -0.59 5.50 -17.43 -0.10 -0.69 16 23 N -0.94 -30.27 13.06 55.49 0.72 -29.55 16 24 Si 0.90 23.95 29.55 -169.99 -5.02 18.93 16 25 H -0.29 -7.64 7.11 56.52 0.40 -7.23 16 26 H -0.29 -7.80 7.11 56.52 0.40 -7.39 16 27 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 28 H 0.07 0.96 6.76 -51.93 -0.35 0.61 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.40 5.93 -51.93 -0.31 0.09 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.13 0.83 7.68 -51.92 -0.40 0.43 16 38 H 0.13 1.02 7.95 -51.93 -0.41 0.61 16 39 H 0.11 2.22 5.55 -53.88 -0.30 1.92 16 40 H 0.06 1.03 6.95 -51.93 -0.36 0.67 16 41 H 0.00 0.07 5.96 -51.93 -0.31 -0.24 16 42 H 0.03 0.61 5.08 -51.93 -0.26 0.34 16 43 H 0.38 11.27 7.67 -40.82 -0.31 10.96 16 44 H 0.25 7.86 8.31 -40.82 -0.34 7.52 16 LS Contribution 346.93 15.07 5.23 5.23 Total: -1.00 -36.33 346.93 -6.78 -43.12 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -6.25 Total: 4.65 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -0.80 Total: 2.59 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: -0.10 Total: -57.52 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.05 Total: -8.92 kcal Atomic # 9 Polarization: -8.19 SS G_CDS: 0.11 Total: -8.08 kcal Atomic # 14 Polarization: 23.95 SS G_CDS: -5.02 Total: 18.93 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.33 -6.78 -43.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691718610.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.664 kcal (2) G-P(sol) polarization free energy of solvation -36.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 16.34 seconds