Wall clock time and date at job start Tue Mar 31 2020 15:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.52210 * 2 1 4 4 C 1.53036 * 109.50196 * 239.91930 * 2 1 3 5 5 C 1.53042 * 109.53872 * 178.68442 * 4 2 1 6 6 C 1.53193 * 109.31447 * 61.36302 * 5 4 2 7 7 N 1.46924 * 108.77477 * 305.36583 * 6 5 4 8 8 C 1.34778 * 120.62955 * 233.63143 * 7 6 5 9 9 O 1.21280 * 120.00042 * 186.32886 * 8 7 6 10 10 C 1.50698 * 120.00297 * 6.33072 * 8 7 6 11 11 C 1.52996 * 109.47270 * 180.02562 * 10 8 7 12 12 F 1.39896 * 109.47337 * 59.99646 * 11 10 8 13 13 F 1.39907 * 109.47049 * 179.97438 * 11 10 8 14 14 F 1.39899 * 109.47144 * 299.99388 * 11 10 8 15 15 C 1.46929 * 118.73973 * 53.60934 * 7 6 5 16 16 H 1.08997 * 109.58767 * 66.31802 * 15 7 6 17 17 C 1.53002 * 109.58562 * 186.60511 * 15 7 6 18 18 C 1.53004 * 109.47231 * 66.19744 * 17 15 7 19 19 N 1.46492 * 109.47258 * 175.73762 * 18 17 15 20 20 C 1.36943 * 120.00464 * 179.72411 * 19 18 17 21 21 H 1.08001 * 119.99361 * 0.27350 * 20 19 18 22 22 C 1.38812 * 120.00398 * 180.27471 * 20 19 18 23 23 N 1.31617 * 119.99526 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00044 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47134 * 89.99819 * 24 22 20 26 26 H 1.48496 * 109.47109 * 210.00115 * 24 22 20 27 27 H 1.48507 * 109.47035 * 329.99862 * 24 22 20 28 28 H 1.08999 * 109.47709 * 299.92452 * 1 2 3 29 29 H 1.09004 * 109.47066 * 59.92604 * 1 2 3 30 30 H 1.09003 * 109.47256 * 179.91577 * 1 2 3 31 31 H 1.08998 * 109.46042 * 58.66039 * 4 2 1 32 32 H 1.09000 * 109.44475 * 298.69587 * 4 2 1 33 33 H 1.09004 * 109.49595 * 301.40718 * 5 4 2 34 34 H 1.08997 * 109.49588 * 181.31621 * 5 4 2 35 35 H 1.09000 * 109.58807 * 185.57973 * 6 5 4 36 36 H 1.09000 * 109.58583 * 65.15326 * 6 5 4 37 37 H 1.09010 * 109.46569 * 300.00066 * 10 8 7 38 38 H 1.09000 * 109.46957 * 59.99138 * 10 8 7 39 39 H 1.08995 * 109.47281 * 306.19292 * 17 15 7 40 40 H 1.08999 * 109.46765 * 186.19404 * 17 15 7 41 41 H 1.09003 * 109.47118 * 55.73253 * 18 17 15 42 42 H 1.09004 * 109.46843 * 295.73862 * 18 17 15 43 43 H 0.97004 * 119.99955 * 359.97438 * 19 18 17 44 44 H 0.97010 * 119.99665 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0408 -0.7230 -1.2483 5 6 3.5709 -0.6949 -1.2658 6 6 4.1053 -1.4266 -0.0306 7 7 3.5045 -0.8290 1.1697 8 6 4.2810 -0.3854 2.1781 9 8 3.7735 -0.0003 3.2100 10 6 5.7800 -0.3678 2.0233 11 6 6.4185 0.1761 3.3029 12 9 6.0707 -0.6431 4.3822 13 9 7.8101 0.1918 3.1593 14 9 5.9587 1.4764 3.5372 15 6 2.0412 -0.7237 1.2497 16 1 1.6053 -1.7215 1.3006 17 6 1.6516 0.0706 2.4979 18 6 2.1267 1.5175 2.3506 19 7 1.6656 2.3022 3.4985 20 6 1.9774 3.6326 3.5883 21 1 2.5595 4.1044 2.8105 22 6 1.5454 4.3748 4.6789 23 7 0.8356 3.7999 5.6265 24 14 1.9714 6.1894 4.8015 25 1 0.9072 6.9929 4.1481 26 1 2.0774 6.5774 6.2310 27 1 3.2683 6.4404 4.1230 28 1 -0.3634 0.5126 0.8906 29 1 -0.3633 0.5150 -0.8894 30 1 -0.3634 -1.0277 -0.0015 31 1 1.6582 -0.2245 -2.1388 32 1 1.6968 -1.7572 -1.2349 33 1 3.9159 0.3390 -1.2540 34 1 3.9335 -1.1896 -2.1669 35 1 5.1896 -1.3244 0.0140 36 1 3.8376 -2.4817 -0.0865 37 1 6.1382 -1.3811 1.8411 38 1 6.0509 0.2701 1.1820 39 1 2.1190 -0.3778 3.3746 40 1 0.5681 0.0542 2.6155 41 1 1.7193 1.9421 1.4330 42 1 3.2157 1.5399 2.3090 43 1 1.1425 1.8785 4.1970 44 1 0.5333 4.3186 6.3885 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691718610.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:38 Heat of formation + Delta-G solvation = -177.900547 kcal Electronic energy + Delta-G solvation = -30041.586226 eV Core-core repulsion = 25579.213456 eV Total energy + Delta-G solvation = -4462.372770 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 18.92 seconds Orbital eigenvalues (eV) -51.03507 -48.56651 -48.50396 -41.95701 -38.76284 -36.90893 -35.22718 -34.04618 -32.66441 -32.53443 -29.81754 -27.53935 -26.68617 -25.39680 -24.38681 -23.64504 -22.24231 -21.32047 -20.14008 -19.48812 -19.43049 -18.97704 -18.33130 -17.69207 -17.04727 -16.69236 -16.48040 -15.82642 -15.63940 -15.47756 -15.37823 -15.09582 -14.97721 -14.93369 -14.73800 -14.67290 -14.62654 -14.37442 -14.23587 -13.99447 -13.47417 -13.27497 -13.17800 -12.94775 -12.89737 -12.86773 -12.50280 -12.40442 -12.28962 -12.06906 -11.93106 -11.69437 -11.57466 -11.34732 -11.15444 -10.81938 -9.96330 -9.48945 -8.85304 -7.93014 -5.19175 1.40529 1.44791 1.52187 1.52854 1.62152 2.06653 2.55620 2.77623 3.04775 3.10198 3.39273 3.60067 3.81494 3.87898 3.90515 4.11512 4.16070 4.17273 4.21640 4.30751 4.40908 4.58910 4.63066 4.65997 4.70135 4.86780 4.90224 4.92840 4.96821 5.06980 5.15706 5.29887 5.31328 5.38007 5.44452 5.47101 5.52487 5.61534 5.81497 6.29741 6.43267 7.21059 7.34043 8.16452 8.38668 9.31688 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.009450 B = 0.005899 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2962.325315 B = 4745.546103 C = 6886.081342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 H 0.055 0.945 4 C -0.109 4.109 5 C -0.134 4.134 6 C 0.097 3.903 7 N -0.601 5.601 8 C 0.494 3.506 9 O -0.532 6.532 10 C -0.181 4.181 11 C 0.459 3.541 12 F -0.191 7.191 13 F -0.180 7.180 14 F -0.196 7.196 15 C 0.169 3.831 16 H 0.091 0.909 17 C -0.130 4.130 18 C 0.173 3.827 19 N -0.739 5.739 20 C -0.235 4.235 21 H 0.066 0.934 22 C -0.083 4.083 23 N -0.973 5.973 24 Si 0.973 3.027 25 H -0.282 1.282 26 H -0.293 1.293 27 H -0.273 1.273 28 H 0.033 0.967 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.180 0.820 38 H 0.164 0.836 39 H 0.087 0.913 40 H 0.045 0.955 41 H 0.002 0.998 42 H 0.021 0.979 43 H 0.367 0.633 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.519 -17.537 -19.563 28.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.125 4.125 3 H 0.073 0.927 4 C -0.146 4.146 5 C -0.172 4.172 6 C -0.024 4.024 7 N -0.335 5.335 8 C 0.281 3.719 9 O -0.409 6.409 10 C -0.221 4.221 11 C 0.405 3.595 12 F -0.172 7.172 13 F -0.161 7.161 14 F -0.177 7.177 15 C 0.065 3.935 16 H 0.108 0.892 17 C -0.167 4.167 18 C 0.047 3.953 19 N -0.380 5.380 20 C -0.367 4.367 21 H 0.084 0.916 22 C -0.274 4.274 23 N -0.625 5.625 24 Si 0.802 3.198 25 H -0.208 1.208 26 H -0.220 1.220 27 H -0.198 1.198 28 H 0.052 0.948 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.114 0.886 37 H 0.197 0.803 38 H 0.182 0.818 39 H 0.105 0.895 40 H 0.063 0.937 41 H 0.020 0.980 42 H 0.039 0.961 43 H 0.198 0.802 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 10.364 -17.180 -19.074 27.684 hybrid contribution -0.192 1.394 1.247 1.881 sum 10.172 -15.786 -17.827 25.893 Atomic orbital electron populations 1.21766 0.94419 1.02474 1.01416 1.21604 0.96290 0.99618 0.95023 0.92651 1.21575 0.95916 1.01130 0.96024 1.21952 0.95503 1.01208 0.98547 1.22211 0.99603 0.98191 0.82355 1.48037 1.06123 1.60644 1.18647 1.20359 0.88997 0.78235 0.84314 1.90972 1.73758 1.46164 1.29988 1.23118 0.93599 1.09756 0.95603 1.20381 0.76273 0.75762 0.87075 1.93178 1.91932 1.72484 1.59640 1.93184 1.30697 1.96383 1.95866 1.93255 1.88759 1.40165 1.95557 1.21196 0.79146 0.98892 0.94218 0.89152 1.22253 0.99051 0.95636 0.99790 1.21000 0.96139 0.90200 0.87958 1.42512 1.64078 1.07010 1.24439 1.19567 1.26057 0.87199 1.03852 0.91597 1.25573 1.01935 1.02723 0.97171 1.69848 1.43673 1.36740 1.12202 0.85139 0.78018 0.80164 0.76512 1.20846 1.21994 1.19788 0.94822 0.91726 0.90899 0.91063 0.90158 0.92620 0.87558 0.87021 0.88638 0.80292 0.81810 0.89495 0.93684 0.98047 0.96102 0.80241 0.94171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.97 71.98 0.65 -2.56 16 2 C -0.11 -2.35 1.98 -10.72 -0.02 -2.37 16 3 H 0.06 1.59 5.93 -2.38 -0.01 1.57 16 4 C -0.11 -1.43 5.17 30.62 0.16 -1.28 16 5 C -0.13 -1.28 6.08 30.67 0.19 -1.10 16 6 C 0.10 0.90 6.35 86.36 0.55 1.45 16 7 N -0.60 -12.44 2.94 -795.01 -2.34 -14.78 16 8 C 0.49 13.37 6.07 87.66 0.53 13.90 16 9 O -0.53 -21.24 8.71 -3.03 -0.03 -21.26 16 10 C -0.18 -3.18 4.11 29.85 0.12 -3.06 16 11 C 0.46 12.69 2.89 71.98 0.21 12.90 16 12 F -0.19 -6.22 16.40 44.97 0.74 -5.48 16 13 F -0.18 -4.26 17.32 44.97 0.78 -3.48 16 14 F -0.20 -7.51 16.40 44.97 0.74 -6.78 16 15 C 0.17 4.21 2.66 44.98 0.12 4.33 16 16 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 17 C -0.13 -4.88 4.19 30.60 0.13 -4.75 16 18 C 0.17 7.98 4.94 86.38 0.43 8.41 16 19 N -0.74 -43.35 5.60 -343.45 -1.92 -45.27 16 20 C -0.23 -14.73 9.99 84.03 0.84 -13.89 16 21 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 22 C -0.08 -5.23 5.50 84.86 0.47 -4.76 16 23 N -0.97 -65.22 13.06 21.65 0.28 -64.94 16 24 Si 0.97 50.36 29.55 68.60 2.03 52.39 16 25 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 26 H -0.29 -15.13 7.11 99.48 0.71 -14.42 16 27 H -0.27 -13.48 7.11 99.48 0.71 -12.77 16 28 H 0.03 0.97 6.76 -2.39 -0.02 0.96 16 29 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.11 0.40 5.93 -2.39 -0.01 0.38 16 36 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.18 1.35 7.68 -2.38 -0.02 1.33 16 38 H 0.16 1.86 7.95 -2.39 -0.02 1.84 16 39 H 0.09 3.75 5.55 -33.18 -0.18 3.57 16 40 H 0.04 1.74 6.95 -2.39 -0.02 1.72 16 41 H 0.00 0.09 5.96 -2.39 -0.01 0.08 16 42 H 0.02 1.02 5.08 -2.38 -0.01 1.01 16 43 H 0.37 23.11 7.67 -92.71 -0.71 22.40 16 44 H 0.25 16.07 8.31 -92.70 -0.77 15.30 16 Total: -1.00 -85.73 346.93 4.79 -80.94 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.15 Total: 21.43 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 4.36 Total: 7.23 kcal Atomic # 7 Polarization: -121.01 SS G_CDS: -3.98 Total: -124.98 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.03 Total: -21.26 kcal Atomic # 9 Polarization: -17.99 SS G_CDS: 2.25 Total: -15.74 kcal Atomic # 14 Polarization: 50.36 SS G_CDS: 2.03 Total: 52.39 kcal Total: -85.73 4.79 -80.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691718610.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.960 kcal (2) G-P(sol) polarization free energy of solvation -85.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 18.92 seconds