Wall clock time and date at job start Tue Mar 31 2020 15:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.52354 * 2 1 4 4 C 1.53038 * 109.49821 * 120.08249 * 2 1 3 5 5 C 1.53041 * 109.54040 * 58.58598 * 4 2 1 6 6 C 1.53186 * 109.31002 * 61.36396 * 5 4 2 7 7 N 1.46929 * 108.77908 * 305.36645 * 6 5 4 8 8 C 1.34775 * 120.63126 * 233.63414 * 7 6 5 9 9 O 1.21277 * 119.99825 * 185.36694 * 8 7 6 10 10 C 1.50699 * 119.99910 * 5.35564 * 8 7 6 11 11 C 1.53004 * 109.46824 * 180.02562 * 10 8 7 12 12 F 1.39894 * 109.47047 * 60.00760 * 11 10 8 13 13 F 1.39908 * 109.46751 * 180.02562 * 11 10 8 14 14 F 1.39901 * 109.47338 * 300.00192 * 11 10 8 15 15 C 1.46925 * 118.73783 * 53.61151 * 7 6 5 16 16 H 1.08997 * 109.70250 * 66.24282 * 15 7 6 17 17 C 1.52992 * 109.58644 * 186.60657 * 15 7 6 18 18 C 1.52998 * 109.47225 * 177.78325 * 17 15 7 19 19 N 1.46497 * 109.47212 * 174.91922 * 18 17 15 20 20 C 1.36945 * 120.00040 * 179.97438 * 19 18 17 21 21 H 1.08002 * 119.99486 * 0.02562 * 20 19 18 22 22 C 1.38813 * 120.00133 * 180.02562 * 20 19 18 23 23 N 1.31621 * 119.99562 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00098 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47163 * 89.99367 * 24 22 20 26 26 H 1.48497 * 109.47100 * 209.99839 * 24 22 20 27 27 H 1.48501 * 109.46935 * 329.99683 * 24 22 20 28 28 H 1.09001 * 109.47467 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47267 * 300.08087 * 1 2 3 30 30 H 1.09010 * 109.46886 * 60.07966 * 1 2 3 31 31 H 1.08998 * 109.46082 * 178.60967 * 4 2 1 32 32 H 1.09005 * 109.45735 * 298.57715 * 4 2 1 33 33 H 1.08996 * 109.49906 * 181.32318 * 5 4 2 34 34 H 1.09004 * 109.49377 * 301.38620 * 5 4 2 35 35 H 1.09003 * 109.59014 * 65.15642 * 6 5 4 36 36 H 1.08997 * 109.58434 * 185.43572 * 6 5 4 37 37 H 1.08994 * 109.47784 * 300.00541 * 10 8 7 38 38 H 1.09007 * 109.47074 * 60.00523 * 10 8 7 39 39 H 1.08993 * 109.47475 * 57.77855 * 17 15 7 40 40 H 1.08999 * 109.47314 * 297.78018 * 17 15 7 41 41 H 1.08999 * 109.47141 * 294.92623 * 18 17 15 42 42 H 1.09009 * 109.47197 * 54.92439 * 18 17 15 43 43 H 0.96996 * 120.00188 * 0.02562 * 19 18 17 44 44 H 0.97004 * 119.99314 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 1.2483 5 6 1.5030 -2.1558 1.2660 6 6 2.0140 -2.9039 0.0307 7 7 1.6515 -2.1381 -1.1696 8 6 0.9739 -2.7217 -2.1779 9 8 0.7655 -2.1086 -3.2033 10 6 0.4756 -4.1364 -2.0313 11 6 -0.2545 -4.5548 -3.3091 12 9 0.6251 -4.4806 -4.3944 13 9 -0.7177 -5.8679 -3.1728 14 9 -1.3390 -3.6986 -3.5283 15 6 2.0413 -0.7238 -1.2497 16 1 3.1272 -0.6441 -1.2993 17 6 1.4229 -0.0911 -2.4978 18 6 1.7848 1.3945 -2.5493 19 7 1.2963 1.9730 -3.8035 20 6 1.5049 3.2994 -4.0728 21 1 2.0299 3.9189 -3.3607 22 6 1.0416 3.8476 -5.2609 23 7 0.4023 3.0924 -6.1289 24 14 1.3268 5.6567 -5.6286 25 1 2.6169 5.8187 -6.3459 26 1 0.2210 6.1698 -6.4766 27 1 1.3691 6.4198 -4.3553 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5151 0.8893 30 1 -0.3633 0.5126 -0.8908 31 1 3.1305 -0.7444 1.2353 32 1 1.6985 -0.1959 2.1389 33 1 1.8480 -2.6628 2.1671 34 1 0.4132 -2.1354 1.2546 35 1 3.0979 -3.0043 0.0867 36 1 1.5573 -3.8927 -0.0124 37 1 1.3204 -4.8035 -1.8609 38 1 -0.2095 -4.1944 -1.1854 39 1 0.3390 -0.2000 -2.4614 40 1 1.8084 -0.5899 -3.3870 41 1 1.3233 1.9103 -1.7072 42 1 2.8677 1.5069 -2.4949 43 1 0.8245 1.4167 -4.4428 44 1 0.0789 3.4755 -6.9594 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691718611.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:09 Heat of formation + Delta-G solvation = -169.600419 kcal Electronic energy + Delta-G solvation = -29322.032674 eV Core-core repulsion = 24860.019825 eV Total energy + Delta-G solvation = -4462.012849 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 12.20 seconds Orbital eigenvalues (eV) -50.11807 -47.67626 -47.50602 -40.93684 -37.99663 -35.37603 -33.85749 -32.91739 -31.74295 -30.81065 -28.36907 -26.80804 -25.44895 -23.93821 -23.84326 -22.28791 -20.88713 -20.34180 -18.98421 -18.59026 -18.23857 -17.50684 -17.08643 -16.57078 -16.05278 -15.44973 -15.25799 -14.68233 -14.56888 -14.47373 -14.33841 -14.18209 -13.95808 -13.79218 -13.69590 -13.67529 -13.47595 -13.24452 -13.05292 -12.82308 -12.61661 -12.47691 -12.12050 -11.87939 -11.63164 -11.35826 -11.16102 -11.10852 -10.85055 -10.77114 -10.58168 -10.42369 -10.18513 -9.94198 -9.57697 -8.95003 -8.75630 -8.62354 -6.77253 -5.63345 -2.91706 2.35002 2.40220 2.85368 3.50617 3.54696 3.57220 3.57769 3.79397 3.89764 4.34753 4.47918 4.59608 4.67843 4.70906 4.77143 4.78888 4.85801 5.03847 5.07311 5.25108 5.45237 5.52275 5.58651 5.65003 5.66777 5.70718 5.78828 5.95547 6.01301 6.07523 6.22230 6.29655 6.39542 6.43551 6.58243 6.63942 7.07143 7.14292 7.28437 7.79660 8.01340 8.55530 9.65981 10.28017 10.62596 11.59528 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.012120 B = 0.004008 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.669281 B = 6984.212140 C = 8815.901755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 H 0.090 0.910 4 C -0.115 4.115 5 C -0.138 4.138 6 C 0.104 3.896 7 N -0.602 5.602 8 C 0.513 3.487 9 O -0.492 6.492 10 C -0.198 4.198 11 C 0.471 3.529 12 F -0.171 7.171 13 F -0.187 7.187 14 F -0.170 7.170 15 C 0.159 3.841 16 H 0.074 0.926 17 C -0.121 4.121 18 C 0.150 3.850 19 N -0.731 5.731 20 C -0.237 4.237 21 H 0.068 0.932 22 C -0.016 4.016 23 N -0.932 5.932 24 Si 0.905 3.095 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.283 1.283 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.016 0.984 42 H 0.011 0.989 43 H 0.386 0.614 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.051 -19.808 18.195 26.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.124 4.124 3 H 0.108 0.892 4 C -0.153 4.153 5 C -0.176 4.176 6 C -0.019 4.019 7 N -0.336 5.336 8 C 0.298 3.702 9 O -0.366 6.366 10 C -0.240 4.240 11 C 0.416 3.584 12 F -0.153 7.153 13 F -0.168 7.168 14 F -0.151 7.151 15 C 0.056 3.944 16 H 0.092 0.908 17 C -0.159 4.159 18 C 0.021 3.979 19 N -0.375 5.375 20 C -0.369 4.369 21 H 0.086 0.914 22 C -0.211 4.211 23 N -0.580 5.580 24 Si 0.737 3.263 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.209 1.209 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.033 0.967 42 H 0.029 0.971 43 H 0.219 0.781 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.965 -19.305 17.610 26.204 hybrid contribution -0.074 0.642 -0.417 0.769 sum 1.891 -18.662 17.193 25.445 Atomic orbital electron populations 1.21889 0.94704 1.01449 1.02382 1.21582 0.96966 1.00148 0.93728 0.89200 1.21569 1.00467 0.95100 0.98165 1.21971 1.01892 0.96624 0.97127 1.21794 1.00714 0.94730 0.84639 1.48011 1.56175 1.11851 1.17591 1.19737 0.79275 0.86943 0.84270 1.90993 1.55254 1.62684 1.27642 1.23087 1.04230 0.99467 0.97171 1.19734 0.78188 0.74405 0.86031 1.93240 1.68411 1.95869 1.57741 1.93186 1.89653 1.37996 1.96010 1.93254 1.56275 1.70091 1.95510 1.21383 0.98726 0.77879 0.96399 0.90846 1.22312 1.01759 0.95533 0.96260 1.20774 0.95901 0.91126 0.90060 1.42356 1.68350 1.08491 1.18291 1.19230 1.29951 0.86195 1.01482 0.91373 1.24744 1.01329 0.97877 0.97194 1.69689 1.43420 1.34657 1.10269 0.86211 0.77190 0.85226 0.77709 1.21816 1.21830 1.20853 0.93079 0.93067 0.91273 0.91797 0.91602 0.90853 0.90934 0.90881 0.90099 0.84867 0.84816 0.90812 0.88988 0.96650 0.97116 0.78062 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.17 37.16 0.30 -1.48 16 2 C -0.11 -1.19 2.24 -90.50 -0.20 -1.39 16 3 H 0.09 1.12 6.86 -51.93 -0.36 0.76 16 4 C -0.12 -0.92 5.43 -26.69 -0.14 -1.07 16 5 C -0.14 -0.85 5.74 -26.61 -0.15 -1.01 16 6 C 0.10 0.66 6.34 -3.71 -0.02 0.63 16 7 N -0.60 -6.36 2.41 -165.23 -0.40 -6.76 16 8 C 0.51 6.37 7.30 -10.99 -0.08 6.29 16 9 O -0.49 -8.64 10.38 5.56 0.06 -8.58 16 10 C -0.20 -1.62 4.11 -27.88 -0.11 -1.74 16 11 C 0.47 5.47 2.89 37.16 0.11 5.57 16 12 F -0.17 -2.43 16.40 2.25 0.04 -2.39 16 13 F -0.19 -1.93 17.32 2.25 0.04 -1.90 16 14 F -0.17 -2.46 16.40 2.25 0.04 -2.43 16 15 C 0.16 2.06 2.74 -67.60 -0.19 1.88 16 16 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 17 C -0.12 -2.19 2.75 -26.74 -0.07 -2.26 16 18 C 0.15 3.19 5.67 -4.04 -0.02 3.17 16 19 N -0.73 -20.05 5.60 -59.91 -0.34 -20.38 16 20 C -0.24 -7.01 9.99 -15.05 -0.15 -7.17 16 21 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 22 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 23 N -0.93 -29.85 13.06 55.49 0.72 -29.13 16 24 Si 0.91 23.30 29.55 -169.99 -5.02 18.28 16 25 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 26 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 27 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 28 H 0.05 0.57 5.97 -51.93 -0.31 0.26 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 1.06 6.12 -51.92 -0.32 0.74 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.49 6.33 -51.93 -0.33 0.16 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.30 5.94 -51.93 -0.31 -0.01 16 37 H 0.13 0.65 7.72 -51.93 -0.40 0.25 16 38 H 0.13 0.70 7.91 -51.93 -0.41 0.29 16 39 H 0.07 1.45 5.51 -51.93 -0.29 1.16 16 40 H 0.09 1.92 6.27 -51.93 -0.33 1.59 16 41 H 0.02 0.33 6.57 -51.93 -0.34 -0.01 16 42 H 0.01 0.23 8.14 -51.92 -0.42 -0.19 16 43 H 0.39 11.40 7.67 -40.82 -0.31 11.09 16 44 H 0.25 7.83 8.31 -40.82 -0.34 7.50 16 LS Contribution 347.34 15.07 5.23 5.23 Total: -1.00 -35.51 347.34 -6.67 -42.18 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -6.20 Total: 4.99 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -0.84 Total: 0.88 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: -0.01 Total: -56.27 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.06 Total: -8.58 kcal Atomic # 9 Polarization: -6.82 SS G_CDS: 0.11 Total: -6.71 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -5.02 Total: 18.28 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.51 -6.67 -42.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691718611.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.417 kcal (2) G-P(sol) polarization free energy of solvation -35.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.20 seconds