Wall clock time and date at job start Tue Mar 31 2020 15:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.52354 * 2 1 4 4 C 1.53038 * 109.49821 * 120.08249 * 2 1 3 5 5 C 1.53041 * 109.54040 * 58.58598 * 4 2 1 6 6 C 1.53186 * 109.31002 * 61.36396 * 5 4 2 7 7 N 1.46929 * 108.77908 * 305.36645 * 6 5 4 8 8 C 1.34775 * 120.63126 * 233.63414 * 7 6 5 9 9 O 1.21277 * 119.99825 * 185.36694 * 8 7 6 10 10 C 1.50699 * 119.99910 * 5.35564 * 8 7 6 11 11 C 1.53004 * 109.46824 * 180.02562 * 10 8 7 12 12 F 1.39894 * 109.47047 * 60.00760 * 11 10 8 13 13 F 1.39908 * 109.46751 * 180.02562 * 11 10 8 14 14 F 1.39901 * 109.47338 * 300.00192 * 11 10 8 15 15 C 1.46925 * 118.73783 * 53.61151 * 7 6 5 16 16 H 1.08997 * 109.70250 * 66.24282 * 15 7 6 17 17 C 1.52992 * 109.58644 * 186.60657 * 15 7 6 18 18 C 1.52998 * 109.47225 * 177.78325 * 17 15 7 19 19 N 1.46497 * 109.47212 * 174.91922 * 18 17 15 20 20 C 1.36945 * 120.00040 * 179.97438 * 19 18 17 21 21 H 1.08002 * 119.99486 * 0.02562 * 20 19 18 22 22 C 1.38813 * 120.00133 * 180.02562 * 20 19 18 23 23 N 1.31621 * 119.99562 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00098 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47163 * 89.99367 * 24 22 20 26 26 H 1.48497 * 109.47100 * 209.99839 * 24 22 20 27 27 H 1.48501 * 109.46935 * 329.99683 * 24 22 20 28 28 H 1.09001 * 109.47467 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47267 * 300.08087 * 1 2 3 30 30 H 1.09010 * 109.46886 * 60.07966 * 1 2 3 31 31 H 1.08998 * 109.46082 * 178.60967 * 4 2 1 32 32 H 1.09005 * 109.45735 * 298.57715 * 4 2 1 33 33 H 1.08996 * 109.49906 * 181.32318 * 5 4 2 34 34 H 1.09004 * 109.49377 * 301.38620 * 5 4 2 35 35 H 1.09003 * 109.59014 * 65.15642 * 6 5 4 36 36 H 1.08997 * 109.58434 * 185.43572 * 6 5 4 37 37 H 1.08994 * 109.47784 * 300.00541 * 10 8 7 38 38 H 1.09007 * 109.47074 * 60.00523 * 10 8 7 39 39 H 1.08993 * 109.47475 * 57.77855 * 17 15 7 40 40 H 1.08999 * 109.47314 * 297.78018 * 17 15 7 41 41 H 1.08999 * 109.47141 * 294.92623 * 18 17 15 42 42 H 1.09009 * 109.47197 * 54.92439 * 18 17 15 43 43 H 0.96996 * 120.00188 * 0.02562 * 19 18 17 44 44 H 0.97004 * 119.99314 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 1.2483 5 6 1.5030 -2.1558 1.2660 6 6 2.0140 -2.9039 0.0307 7 7 1.6515 -2.1381 -1.1696 8 6 0.9739 -2.7217 -2.1779 9 8 0.7655 -2.1086 -3.2033 10 6 0.4756 -4.1364 -2.0313 11 6 -0.2545 -4.5548 -3.3091 12 9 0.6251 -4.4806 -4.3944 13 9 -0.7177 -5.8679 -3.1728 14 9 -1.3390 -3.6986 -3.5283 15 6 2.0413 -0.7238 -1.2497 16 1 3.1272 -0.6441 -1.2993 17 6 1.4229 -0.0911 -2.4978 18 6 1.7848 1.3945 -2.5493 19 7 1.2963 1.9730 -3.8035 20 6 1.5049 3.2994 -4.0728 21 1 2.0299 3.9189 -3.3607 22 6 1.0416 3.8476 -5.2609 23 7 0.4023 3.0924 -6.1289 24 14 1.3268 5.6567 -5.6286 25 1 2.6169 5.8187 -6.3459 26 1 0.2210 6.1698 -6.4766 27 1 1.3691 6.4198 -4.3553 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5151 0.8893 30 1 -0.3633 0.5126 -0.8908 31 1 3.1305 -0.7444 1.2353 32 1 1.6985 -0.1959 2.1389 33 1 1.8480 -2.6628 2.1671 34 1 0.4132 -2.1354 1.2546 35 1 3.0979 -3.0043 0.0867 36 1 1.5573 -3.8927 -0.0124 37 1 1.3204 -4.8035 -1.8609 38 1 -0.2095 -4.1944 -1.1854 39 1 0.3390 -0.2000 -2.4614 40 1 1.8084 -0.5899 -3.3870 41 1 1.3233 1.9103 -1.7072 42 1 2.8677 1.5069 -2.4949 43 1 0.8245 1.4167 -4.4428 44 1 0.0789 3.4755 -6.9594 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691718611.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:26 Heat of formation + Delta-G solvation = -193.460426 kcal Electronic energy + Delta-G solvation = -29323.067321 eV Core-core repulsion = 24860.019825 eV Total energy + Delta-G solvation = -4463.047497 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 31.04 seconds Orbital eigenvalues (eV) -51.05834 -48.58282 -48.53528 -41.87197 -38.94565 -37.01838 -35.13865 -34.15167 -32.81950 -32.30033 -29.81224 -27.82237 -26.60165 -25.44071 -24.75478 -23.76861 -22.09418 -21.34161 -19.85201 -19.53716 -19.33805 -18.95876 -18.38256 -17.61105 -17.08527 -16.73605 -16.24540 -16.18167 -15.56800 -15.48643 -15.33451 -15.21111 -15.07417 -14.94962 -14.93296 -14.71234 -14.66961 -14.61612 -14.17592 -14.08781 -13.53310 -13.38366 -13.13848 -13.01416 -12.90383 -12.85029 -12.50544 -12.35667 -12.31080 -12.11354 -11.88280 -11.74726 -11.70693 -11.31082 -11.20068 -10.92201 -10.12490 -9.54684 -9.01836 -7.95476 -5.26293 1.43701 1.47854 1.48794 1.55064 1.56317 2.01212 2.54740 2.74852 3.00183 3.07508 3.36961 3.54433 3.80148 3.81928 3.92494 4.08371 4.13433 4.16334 4.20153 4.26562 4.40439 4.49949 4.59356 4.62488 4.71305 4.78900 4.82628 4.85103 4.93687 5.01148 5.16066 5.22664 5.28252 5.34977 5.42403 5.43728 5.52299 5.57943 5.75110 6.25502 6.37579 7.11249 7.29992 8.07758 8.31527 9.28831 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.012120 B = 0.004008 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.669281 B = 6984.212140 C = 8815.901755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 H 0.073 0.927 4 C -0.111 4.111 5 C -0.134 4.134 6 C 0.095 3.905 7 N -0.596 5.596 8 C 0.501 3.499 9 O -0.557 6.557 10 C -0.181 4.181 11 C 0.462 3.538 12 F -0.193 7.193 13 F -0.178 7.178 14 F -0.194 7.194 15 C 0.164 3.836 16 H 0.079 0.921 17 C -0.098 4.098 18 C 0.150 3.850 19 N -0.749 5.749 20 C -0.248 4.248 21 H 0.078 0.922 22 C -0.081 4.081 23 N -0.974 5.974 24 Si 0.981 3.019 25 H -0.285 1.285 26 H -0.294 1.294 27 H -0.265 1.265 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.025 0.975 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.118 0.882 37 H 0.177 0.823 38 H 0.174 0.826 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.023 0.977 42 H 0.015 0.985 43 H 0.369 0.631 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.259 -21.161 21.701 30.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 H 0.092 0.908 4 C -0.148 4.148 5 C -0.172 4.172 6 C -0.026 4.026 7 N -0.329 5.329 8 C 0.289 3.711 9 O -0.436 6.436 10 C -0.221 4.221 11 C 0.407 3.593 12 F -0.174 7.174 13 F -0.159 7.159 14 F -0.176 7.176 15 C 0.060 3.940 16 H 0.097 0.903 17 C -0.135 4.135 18 C 0.023 3.977 19 N -0.391 5.391 20 C -0.379 4.379 21 H 0.096 0.904 22 C -0.273 4.273 23 N -0.625 5.625 24 Si 0.809 3.191 25 H -0.212 1.212 26 H -0.221 1.221 27 H -0.190 1.190 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.123 0.877 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.136 0.864 37 H 0.195 0.805 38 H 0.191 0.809 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.041 0.959 42 H 0.033 0.967 43 H 0.200 0.800 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.211 -20.687 21.213 29.804 hybrid contribution -0.446 1.000 -1.461 1.826 sum 2.765 -19.688 19.752 28.025 Atomic orbital electron populations 1.21828 0.95483 1.01726 1.00856 1.21537 0.96187 0.99665 0.94751 0.90846 1.21549 1.01061 0.96156 0.96039 1.21985 1.01639 0.95315 0.98254 1.22245 1.02245 0.95680 0.82381 1.48086 1.55197 1.10848 1.18752 1.20490 0.78648 0.88423 0.83575 1.90986 1.57698 1.64678 1.30227 1.23140 1.06066 0.96793 0.96102 1.20320 0.77654 0.74437 0.86878 1.93196 1.68980 1.95985 1.59257 1.93198 1.89580 1.37234 1.95928 1.93205 1.57593 1.71010 1.95763 1.21131 0.98516 0.79787 0.94520 0.90284 1.21970 1.00474 0.93153 0.97950 1.20959 0.95660 0.93361 0.87722 1.42654 1.68472 1.08086 1.19871 1.19705 1.29272 0.87250 1.01704 0.90372 1.25713 1.01539 1.02914 0.97119 1.69888 1.45043 1.36872 1.10726 0.85034 0.76840 0.79321 0.77930 1.21150 1.22086 1.18967 0.91944 0.91698 0.95547 0.90805 0.90701 0.87690 0.91303 0.89216 0.86434 0.80513 0.80891 0.93051 0.92209 0.95878 0.96686 0.80031 0.94029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 8.17 71.98 0.59 -2.79 16 2 C -0.10 -2.19 2.24 -10.72 -0.02 -2.21 16 3 H 0.07 1.80 6.86 -2.39 -0.02 1.78 16 4 C -0.11 -1.37 5.43 30.62 0.17 -1.20 16 5 C -0.13 -0.99 5.74 30.67 0.18 -0.81 16 6 C 0.10 0.73 6.34 86.36 0.55 1.28 16 7 N -0.60 -11.36 2.41 -795.05 -1.92 -13.28 16 8 C 0.50 12.02 7.30 87.66 0.64 12.66 16 9 O -0.56 -20.70 10.38 -3.02 -0.03 -20.74 16 10 C -0.18 -2.41 4.11 29.85 0.12 -2.28 16 11 C 0.46 10.37 2.89 71.98 0.21 10.58 16 12 F -0.19 -5.59 16.40 44.97 0.74 -4.85 16 13 F -0.18 -3.38 17.32 44.97 0.78 -2.60 16 14 F -0.19 -5.81 16.40 44.97 0.74 -5.08 16 15 C 0.16 4.20 2.74 44.97 0.12 4.33 16 16 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 17 C -0.10 -3.75 2.75 30.59 0.08 -3.67 16 18 C 0.15 6.69 5.67 86.38 0.49 7.18 16 19 N -0.75 -43.19 5.60 -343.44 -1.92 -45.12 16 20 C -0.25 -15.03 9.99 84.03 0.84 -14.19 16 21 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 22 C -0.08 -5.01 5.50 84.86 0.47 -4.55 16 23 N -0.97 -64.84 13.06 21.65 0.28 -64.56 16 24 Si 0.98 48.76 29.55 68.60 2.03 50.78 16 25 H -0.28 -13.78 7.11 99.48 0.71 -13.08 16 26 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 27 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 28 H 0.06 1.32 5.97 -2.39 -0.01 1.30 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.03 0.84 6.12 -2.38 -0.01 0.82 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.07 0.61 6.33 -2.39 -0.02 0.59 16 35 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.12 0.09 5.94 -2.39 -0.01 0.08 16 37 H 0.18 0.81 7.72 -2.39 -0.02 0.79 16 38 H 0.17 0.95 7.91 -2.38 -0.02 0.94 16 39 H 0.05 2.19 5.51 -2.39 -0.01 2.18 16 40 H 0.06 2.70 6.27 -2.39 -0.01 2.69 16 41 H 0.02 1.01 6.57 -2.39 -0.02 0.99 16 42 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 43 H 0.37 23.34 7.67 -92.71 -0.71 22.63 16 44 H 0.25 16.04 8.31 -92.71 -0.77 15.27 16 Total: -1.00 -84.43 347.34 5.44 -78.98 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: 0.32 Total: 22.13 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 4.43 Total: 4.33 kcal Atomic # 7 Polarization: -119.40 SS G_CDS: -3.56 Total: -122.96 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.03 Total: -20.74 kcal Atomic # 9 Polarization: -14.78 SS G_CDS: 2.25 Total: -12.53 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 2.03 Total: 50.78 kcal Total: -84.43 5.44 -78.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691718611.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.477 kcal (2) G-P(sol) polarization free energy of solvation -84.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 31.04 seconds